Restriction map for
pF1KB6828
(Circular) (Six-base) MAPSORT of: pF1KB6828.seq Check: 7521 from: 1 to: 3677
pF1KB6828 3677 bp
With 182 enzymes: SgfI *
April 24, 2009 13:06 ..
AccI GT'mk_AC
Cuts at: 715 715
Size: 3677
Acc65I G'GTAC_C
Cuts at: 693 693
Size: 3677
AclI AA'CG_TT
Cuts at: 3517 3517
Size: 3677
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 123 1502 1934 2681 2949 123
Size: 1379 432 747 268 851
Fragments arranged by size:
1379 851 747 432 268
AflIII A'CryG_T
Cuts at: 1029 2133 3110 1029
Size: 1104 977 1596
Fragments arranged by size:
1596 1104 977
AgeI A'CCGG_T
Cuts at: 2065 2065
Size: 3677
AlwNI CAG_nnn'CTG
Cuts at: 982 2549 982
Size: 1567 2110
ApaLI G'TGCA_C
Cuts at: 2447 2447
Size: 3677
ApoI r'AATT_y
Cuts at: 681 3030 3286 681
Size: 2349 256 1072
Fragments arranged by size:
2349 1072 256
AseI AT'TA_AT
Cuts at: 20 20
Size: 3677
AsiSI GCG_AT'CGC
Cuts at: 104 104
Size: 3677
AvaI C'yCGr_G
Cuts at: 697 697
Size: 3677
BamHI G'GATC_C
Cuts at: 702 702
Size: 3677
BanI G'GyrC_C
Cuts at: 591 693 1107 1355 1390 591
Size: 102 414 248 35 2878
Fragments arranged by size:
2878 414 248 102 35
BanII G_rGCy'C
Cuts at: 691 1721 691
Size: 1030 2647
BbeI G_GCGC'C
Cuts at: 1111 1359 1111
Size: 248 3429
BbvCI CC'TCA_GC
Cuts at: 528 528
Size: 3677
BciVI GTATCCnnnnn_n'
Cuts at: 1575 2336 3677 1575
Size: 761 1341 1575
Fragments arranged by size:
1575 1341 761
BclI T'GATC_A
Cuts at: 1197 1197
Size: 3677
BglII A'GATC_T
Cuts at: 1192 3229 1192
Size: 2037 1640
BlpI GC'TnA_GC
Cuts at: 789 789
Size: 3677
Bme1580I G_kGCm'C
Cuts at: 596 1302 1395 2451 596
Size: 706 93 1056 1822
Fragments arranged by size:
1822 1056 706 93
BmrI ACTGGGnnnn_n'
Cuts at: 889 970 1305 3449 889
Size: 81 335 2144 1117
Fragments arranged by size:
2144 1117 335 81
BplI GAGnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 144 2044 144
Size: 1900 1777
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 166 166
Size: 3677
Bpu10I CC'TnA_GC
Cuts at: 528 528
Size: 3677
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 853 1732 2224 2522 853
Size: 879 492 298 2008
Fragments arranged by size:
2008 879 492 298
BsaI GGTCTCn'nnnn_
Cuts at: 3381 3381
Size: 3677
BsaAI yAC'GTr
Cuts at: 1030 1030
Size: 3677
BsaBI GATnn'nnATC
Cuts at: 6 1191 3228 6
Size: 1185 2037 455
Fragments arranged by size:
2037 1185 455
BsaHI Gr'CG_yC
Cuts at: 1108 1356 2058 3554 1108
Size: 248 702 1496 1231
Fragments arranged by size:
1496 1231 702 248
BsaWI w'CCGG_w
Cuts at: 866 1387 2065 2339 2486 2897 866
Size: 521 678 274 147 411 1646
Fragments arranged by size:
1646 678 521 411 274 147
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 120 120
Size: 3677
BseYI C'CCAG_C
Cuts at: 1102 1860 2437 2933 1102
Size: 758 577 496 1846
Fragments arranged by size:
1846 758 577 496
BsiEI CG_ry'CG
Cuts at: 104 1219 1265 2473 104
Size: 1115 46 1208 1308
Fragments arranged by size:
1308 1208 1115 46
BsiHKAI G_wGCw'C
Cuts at: 691 1469 1659 2451 691
Size: 778 190 792 1917
Fragments arranged by size:
1917 792 778 190
BsmBI CGTCTCn'nnnn_
Cuts at: 142 142
Size: 3677
Bsp1286I G_dGCh'C
Cuts at: 596 691 1302 1395 1469 1659 1721 2451 596
Size: 95 611 93 74 190 62 730 1822
Fragments arranged by size:
1822 730 611 190 95 93 74 62
BspEI T'CCGG_A
Cuts at: 2897 2897
Size: 3677
BspHI T'CATG_A
Cuts at: 2853 2853
Size: 3677
BspMI ACCTGCnnnn'nnnn_
Cuts at: 727 941 1243 1624 727
Size: 214 302 381 2780
Fragments arranged by size:
2780 381 302 214
BsrBI CCG'CTC
Cuts at: 50 306 1969 2023 3507 3672 50
Size: 256 1663 54 1484 165 55
Fragments arranged by size:
1663 1484 256 165 55 54
BsrDI GCAATG_nn'
Cuts at: 515 1589 515
Size: 1074 2603
BsrFI r'CCGG_y
Cuts at: 1675 1856 2065 1675
Size: 181 209 3287
Fragments arranged by size:
3287 209 181
BssSI C'ACGA_G
Cuts at: 132 1948 2306 132
Size: 1816 358 1503
Fragments arranged by size:
1816 1503 358
BstAPI GCAn_nnn'nTGC
Cuts at: 1054 1054
Size: 3677
BstBI TT'CG_AA
Cuts at: 2038 2038
Size: 3677
BstXI CCAn_nnnn'nTGG
Cuts at: 481 481
Size: 3677
BstYI r'GATC_y
Cuts at: 1 702 1169 1192 1527 1773 2785 2871 2883
Size: 701 467 23 335 246 1012 86 12
Cuts at: 2883 3229 1
Size: 346 449
Fragments arranged by size:
1012 701 467 449 346 335 246 86
23 12
BtgI C'CryG_G
Cuts at: 398 398
Size: 3677
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 1627 1808 1971 1627
Size: 181 163 3333
Fragments arranged by size:
3333 181 163
BtsI GCAGTG_nn'
Cuts at: 473 920 473
Size: 447 3230
DraI TTT'AAA
Cuts at: 581 676 581
Size: 95 3582
DrdI GACnn_nn'nnGTC
Cuts at: 1383 2241 1383
Size: 858 2819
EaeI y'GGCC_r
Cuts at: 448 1262 1436 1827 1854 3199 448
Size: 814 174 391 27 1345 926
Fragments arranged by size:
1345 926 814 391 174 27
EagI C'GGCC_G
Cuts at: 1262 1262
Size: 3677
EarI CTCTTCn'nnn_
Cuts at: 221 614 1700 1910 221
Size: 393 1086 210 1988
Fragments arranged by size:
1988 1086 393 210
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 418 1885 2195 2341 3487 418
Size: 1467 310 146 1146 608
Fragments arranged by size:
1467 1146 608 310 146
EcoICRI GAG'CTC
Cuts at: 689 689
Size: 3677
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 123 166 1502 1934 2681 2949 123
Size: 43 1336 432 747 268 851
Fragments arranged by size:
1336 851 747 432 268 43
EcoO109I rG'GnC_Cy
Cuts at: 816 816
Size: 3677
EcoRI G'AATT_C
Cuts at: 681 681
Size: 3677
FalI AAGnnnnnCTTnnnnnnnn_nnnnn'
Cuts at: 1696 1696
Size: 3677
FspI TGC'GCA
Cuts at: 1458 1458
Size: 3677
HaeII r_GCGC'y
Cuts at: 1111 1359 2381 3360 1111
Size: 248 1022 979 1428
Fragments arranged by size:
1428 1022 979 248
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 268 300 1519 1549 1551 1581 268
Size: 32 1219 30 2 30 2364
Fragments arranged by size:
2364 1219 32 30 30 2
HincII GTy'rAC
Cuts at: 716 716
Size: 3677
KasI G'GCGC_C
Cuts at: 1107 1355 1107
Size: 248 3429
KpnI G_GTAC'C
Cuts at: 697 697
Size: 3677
MluI A'CGCG_T
Cuts at: 3110 3110
Size: 3677
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 689 2348 2532 689
Size: 1659 184 1834
Fragments arranged by size:
1834 1659 184
MscI TGG'CCA
Cuts at: 450 1438 450
Size: 988 2689
MslI CAynn'nnrTG
Cuts at: 466 520 1666 1793 466
Size: 54 1146 127 2350
Fragments arranged by size:
2350 1146 127 54
MspA1I CmG'CkG
Cuts at: 788 1102 1462 2475 2720 788
Size: 314 360 1013 245 1745
Fragments arranged by size:
1745 1013 360 314 245
NaeI GCC'GGC
Cuts at: 1858 1858
Size: 3677
NarI GG'CG_CC
Cuts at: 1108 1356 1108
Size: 248 3429
NcoI C'CATG_G
Cuts at: 398 398
Size: 3677
NdeI CA'TA_TG
Cuts at: 598 598
Size: 3677
NgoMIV G'CCGG_C
Cuts at: 1856 1856
Size: 3677
NspI r_CATG'y
Cuts at: 730 1230 2137 730
Size: 500 907 2270
Fragments arranged by size:
2270 907 500
PciI A'CATG_T
Cuts at: 2133 2133
Size: 3677
PmeI GTTT'AAAC
Cuts at: 676 676
Size: 3677
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 2816 2848 2816
Size: 32 3645
PsiI TTA'TAA
Cuts at: 247 247
Size: 3677
PstI C_TGCA'G
Cuts at: 724 1409 724
Size: 685 2992
PvuI CG_AT'CG
Cuts at: 104 104
Size: 3677
PvuII CAG'CTG
Cuts at: 1102 1462 1102
Size: 360 3317
RsrII CG'GwC_CG
Cuts at: 1872 1872
Size: 3677
SacI G_AGCT'C
Cuts at: 691 691
Size: 3677
SalI G'TCGA_C
Cuts at: 714 714
Size: 3677
SapI GCTCTTCn'nnn_
Cuts at: 1700 1910 1700
Size: 210 3467
SbfI CC_TGCA'GG
Cuts at: 724 724
Size: 3677
ScaI AGT'ACT
Cuts at: 3194 3194
Size: 3677
SfcI C'TryA_G
Cuts at: 33 720 1405 2398 2589 33
Size: 687 685 993 191 1121
Fragments arranged by size:
1121 993 687 685 191
SfoI GGC'GCC
Cuts at: 1109 1357 1109
Size: 248 3429
SgfI GCG_AT'CGC
Cuts at: 104 104
Size: 3677
SmaI CCC'GGG
Cuts at: 699 699
Size: 3677
SmlI C'TyrA_G
Cuts at: 832 1747 2239 2501 832
Size: 915 492 262 2008
Fragments arranged by size:
2008 915 492 262
SpeI A'CTAG_T
Cuts at: 67 67
Size: 3677
SphI G_CATG'C
Cuts at: 730 1230 730
Size: 500 3177
StyI C'CwwG_G
Cuts at: 398 587 811 1165 398
Size: 189 224 354 2910
Fragments arranged by size:
2910 354 224 189
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 1260 1393 1852 2061 1260
Size: 133 459 209 2876
Fragments arranged by size:
2876 459 209 133
TatI w'GTAC_w
Cuts at: 3192 3192
Size: 3677
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 3194 3226 3194
Size: 32 3645
Tth111I GACn'n_nGTC
Cuts at: 1474 1474
Size: 3677
XbaI T'CTAG_A
Cuts at: 708 708
Size: 3677
XcmI CCAnnnn_n'nnnnTGG
Cuts at: 114 1172 114
Size: 1058 2619
XmaI C'CCGG_G
Cuts at: 697 697
Size: 3677
Enzymes that do cut:
AccI Acc65I AclI AcuI AflIII AgeI AlwNI ApaLI
ApoI AseI AsiSI AvaI BamHI BanI BanII BbeI
BbvCI BciVI BclI BglII BlpI Bme1580I BmrI BplI
BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI
BseRI BseYI BsiEI BsiHKAI BsmBI Bsp1286I BspEI BspHI
BspMI BsrBI BsrDI BsrFI BssSI BstAPI BstBI BstXI
BstYI BtgI BtgZI BtsI DraI DrdI EaeI EagI
EarI EciI EcoICRI Eco57MI EcoO109I EcoRI FalI FspI
HaeII Hin4I HincII KasI KpnI MluI MmeI MscI
MslI MspA1I NaeI NarI NcoI NdeI NgoMIV NspI
PciI PmeI PpiI PsiI PstI PvuI PvuII RsrII
SacI SalI SapI SbfI ScaI SfcI SfoI SgfI
SmaI SmlI SpeI SphI StyI TaqII TatI TstI
Tth111I XbaI XcmI XmaI
Enzymes that do not cut:
AarI AatII AfeI AflII AhdI AleI AlfI AloI
ApaI AscI AvrII BaeI BbsI BcgI BfrBI BglI
BmgBI BmtI BsaXI BsgI BsiWI BsmI BsrGI BssHII
BstEII BstZ17I Bsu36I ClaI CspCI DraIII EcoNI EcoRV
FseI FspAI HindIII HpaI MfeI NheI NotI NruI
NsiI PacI PasI PflMI PfoI PmlI PpuMI PshAI
PspOMI PspXI PsrI SacII SanDI SexAI SfiI SgrAI
SnaBI SrfI SspI StuI SwaI XhoI XmnI ZraI