GENSCAN 1.0	Date run:  4-Nov-116	Time: 16:07:13

Sequence gi568815591f:139260262_139522337 : 262076 bp : 43.57% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +    991   1480  490  1  1   86   86   278 0.808  20.41
 1.02 Intr +   6072   6142   71  2  2  106   83    21 0.935   1.38
 1.03 Intr +   9133   9262  130  1  1   44  110    77 0.902   6.20
 1.04 Intr +  12061  12236  176  0  2  104   39   103 0.377   5.74
 1.05 Intr +  13036  13149  114  1  0   62  110   156 0.990  14.76
 1.06 Intr +  13670  13813  144  2  0   40  116    53 0.854   2.70
 1.07 Intr +  19057  19099   43  1  1   54  115    28 0.714   0.34
 1.08 Intr +  22763  24167 1405  1  1   16   54   406 0.353  18.85
 1.09 Term +  61544  61608   65  0  2  130   47    80 0.057   6.15
 1.10 PlyA +  62032  62037    6                               1.05

 2.00 Prom +  62090  62129   40                              -3.06
 2.01 Init +  79929  80256  328  2  1   93   65   199 0.232  15.60
 2.02 Intr +  81161  81261  101  0  2   -1   63   194 0.105   7.83
 2.03 Intr +  85240  85392  153  0  0   82   60   117 0.891   8.57
 2.04 Intr +  99944 100061  118  1  1   89  127   116 0.103  15.64
 2.05 Intr + 107558 107628   71  0  2   60   67    21 0.004  -3.90
 2.06 Intr + 115801 115895   95  0  2   80   40   109 0.161   4.06
 2.07 Intr + 134015 134066   52  2  1   42   64    60 0.118  -2.09
 2.08 Intr + 138338 138436   99  1  0  121   42    62 0.568   5.21
 2.09 Intr + 141876 141986  111  2  0   66  116    92 0.749  10.38
 2.10 Intr + 145383 145526  144  2  0  119   84   125 0.999  15.68
 2.11 Intr + 146913 147089  177  2  0   63   83   120 0.992   9.12
 2.12 Term + 149302 149442  141  0  0   64   42    89 0.888  -0.17
 2.13 PlyA + 149622 149627    6                               1.05

 3.08 PlyA - 152815 152810    6                               1.05
 3.07 Term - 157434 157216  219  0  0   79   42   280 0.780  19.54
 3.06 Intr - 167301 167278   24  0  0  105   64    26 0.100   0.12
 3.05 Intr - 193446 193350   97  2  1   96   17   159 0.101   9.61
 3.04 Intr - 193953 193850  104  0  2  106   68     0 0.461  -1.23
 3.03 Intr - 219511 219366  146  2  2   85   94    25 0.791   2.80
 3.02 Intr - 219986 219885  102  0  0  105   80   131 0.839  14.15
 3.01 Init - 223381 222625  757  1  1   81  100   915 0.434  84.87
 3.00 Prom - 224496 224457   40                              -3.16

 4.03 PlyA - 228038 228033    6                               1.05
 4.02 Term - 229821 229649  173  1  2   34   36   148 0.734   2.19
 4.01 Init - 234780 234618  163  0  1   57   44   164 0.838   8.79
 4.00 Prom - 238025 237986   40                              -3.06

 5.00 Prom + 238215 238254   40                              -8.06
 5.01 Init + 242193 242376  184  2  1  100   55   153 0.941  12.48
 5.02 Intr + 242467 242655  189  2  0    0   -1   244 0.053   6.26
 5.03 Intr + 243030 243545  516  1  0  -53   38   336 0.007   7.43
 5.04 Term + 252945 253105  161  1  2  110   47    90 0.609   5.20
 5.05 PlyA + 254769 254774    6                               1.05

 6.02 PlyA - 254872 254867    6                               1.05
 6.01 Term - 258797 258680  118  1  1   53   47   145 0.809   4.91

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Sngl -  99923  99456  468  2  0   72   42   231 0.815  13.12


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815591f:139260262_139522337|GENSCAN_predicted_peptide_1|879_aa
XVVALNSHKSEKKKKRYKDSLSLAAMIRKFQKEKDALKKESNPKVPVTLSTPSLNKPPCA
AAALGNDVPDLNLSSGDPDLPIFVSTNEHELFQEAENALEMLDDFDFDRLLDAASDGSPL
SESGGENGTTTQPTYTSQVMPKVVPTLPEGLPVLLEKRIEDLRVAAKLFDEEGRKKFFTQ
DMNNILLDIELQLQELGPVIRSGVYSHLEAFVPCNKETLVKRLKKLHLNVQDDRLREPLQ
KLKLAVSNVMPEQLFKYQEDCQARSQAKCAKYVSLLFGLAFAFEKCMYVILQTDEEREKN
GSEEDDDEKPGKRVIGPRKKFHWDDTIRTLLCNLVEIKLGCYELEPNKSQSAEDYLKSFM
ETEVKPLWPKGWMQARAKKKVIPAPKPKVKECSPKKDQKTPTSLVASVSGPPTSSSTAAI
AAASSSSAPAQETICLDDSLDEDLSFHSPSLDLVSEALAVINNGNKGPPVGSRISMPTTK
PRPGLREEKLASIMSKLPLATPKKLDSTQTTHSSSLIAGHTGPVPKKPQDLAHTGISSGL
IAGSSIQNPKVSLEPLPARLLQQGLQRSSQIHTSSSSQTHVSSSSQAQIAASSHALGTSE
AQDASSLTQVTKVHQHSAVQQNYVSPLQATISKSQTNPVVKLSNNPQLSCSSSLIKTSDK
PLMYRLPLSTPSPGNGSQGSHPLVSRTVPSTTTSSNYLAKAMVSQISTQGFKSPFSMAAS
PKLAASPKPATSPKPLPSPKPSASPKPSLSAKPSVSTKLISKSNPTPKPTVSPSSSSPNA
LVAQGSHSSTNSPVHKQPSGMNISRQSPTLNLLPSSRTSGLPPTKNLQAPSKLTNSSSTG
TVGKNSLSGIAMNVPASRGQQQARDSSQQGRRRQYEKEK

>gi568815591f:139260262_139522337|GENSCAN_predicted_CDS_1|2640_bp
nnagttgtggctctaaattcacacaagtctgaaaaaaagaagaaacgttataaagattct
ctttctctagctgccatgattagaaaattccagaaagagaaggatgcattaaagaaggag
tctaaccccaaagtcccagtgaccttgtcaaccccttctctgaataaacccccatgtgct
gctgcagcactggggaatgacgtcccggacttaaatctgagcagcggtgatccagacctt
cccatttttgttagcacaaatgaacatgagctgtttcaggaagctgaaaatgccctagag
atgctagatgattttgacttcgacagattactggatgctgcttctgatggtagcccccta
tctgagtcggggggtgaaaatggaaccaccacccagccaacctacacttctcaggttatg
cccaaagtggtacctacactcccagagggtctacctgtacttcttgaaaaacgtatcgaa
gaccttcgtgtagctgccaaactttttgatgaagaaggaaggaaaaaattctttacacag
gatatgaataatattcttctggacattgagttacagctacaagaactaggccctgtcatt
cgcagtggtgtctactcccaccttgaagcttttgtgccatgcaataaagaaacactagta
aaacgtctgaagaagttacatctcaatgtccaggatgatcgtttaagagaacctctgcaa
aaactgaaactggctgttagcaatgtcatgcctgaacagctatttaaataccaggaggac
tgccaggctcgtagtcaagctaagtgtgccaagtatgtatctcttctatttggactggct
tttgcatttgagaagtgtatgtacgttatattgcagacagatgaagaacgagaaaaaaat
ggatctgaagaggatgatgatgagaaaccaggaaaacgtgtcataggaccaagaaagaaa
ttccactgggatgacactatcagaactttgttatgtaaccttgttgagatcaaattggga
tgctatgagttagaaccaaataaaagccagtctgctgaagattatcttaagtcttttatg
gagacagaagtgaagcccctgtggcctaagggctggatgcaggcaagggcaaagaaaaag
gtgattcctgcacctaaacccaaagtaaaggagtgtagtccaaaaaaggaccagaaaact
ccaacatccctggtggcttcggttagcggtcctccaacgagctccagcacagctgccatt
gctgcagctagctctagctctgcaccagcccaagaaaccatctgcctcgacgactcacta
gatgaagacctttctttccattcaccttcactggatcttgtttctgaagctttagcggtt
atcaacaatgggaacaagggccctccagttggctcaaggataagcatgccaaccacaaag
cctcgtccaggactgagagaagaaaaattagcaagtatcatgagtaagctgccactagct
actcccaaaaaactagattctactcagactacacattcttcaagtcttattgctggtcac
acagggccagtaccaaagaaaccccaggatttagctcatactggcatctcttcaggcctt
attgctggttcttccattcagaaccctaaagtttctttagaacctttgccagccaggcta
cttcaacaaggacttcagaggtcaagccagattcacacttcttcctcttcacagacccat
gtctcctcttcttcccaagcccaaattgctgcctcttctcatgctctgggaacatccgag
gcccaagatgcttcttcgttaacacaagtaacaaaggtgcaccagcattcagctgtccag
cagaactatgtgtctccattacaggccaccatcagtaaatcccagaccaaccccgtcgtg
aagttaagtaataatccccaactctcctgttcctcctcacttattaagacttcagataag
ccacttatgtaccgccttcccttatctaccccctcacctggaaatggttctcaagggtcc
caccccctggtttctaggacagtacctagcaccactacctccagtaactatttagccaag
gctatggtgtcacagatctccacgcagggtttcaaatctcccttctcgatggctgcctcc
ccaaaacttgccgcatctcccaagcctgccacatctcctaaacccctgccctcgcctaag
ccttctgcctcacccaagccctctctgtcagctaagccttcagtatcaactaaacttatt
tctaaatccaacccaactcccaagcctactgtatccccaagtagttccagtccaaatgca
ctagttgcccagggtagccactccagcactaacagcccagtccataaacagcccagtgga
atgaacatcagcagacagtctcccaccttgaatttattgccctctagtcgcacttcaggc
cttccacctacaaaaaatcttcaggccccctcaaagctaacaaactcatcatccactgga
actgttgggaagaacagcttgagtggaattgcaatgaatgtacctgccagcagaggacag
cagcaggccagggacagcagccagcaaggccggaggaggcagtatgagaaagagaaatga

>gi568815591f:139260262_139522337|GENSCAN_predicted_peptide_2|529_aa
MASTLQPEAEIDRGRRHLTAAGAKLLLEIRNTGKGPAASGKNPPELTFRGRVSKIRPICP
ARCAPRRRMPAFAQARGLRRRRGDYCAGKRVRRSVRAPVQRPEHRCSFEGLLRELRYLSA
ATGRPYRDTAAYRYLVKAFRAHRVTSEKLCRAQHELHFQAATYLCLLRSIRKHVALHQEF
HGKGERSVEESAGLPKRARSAPHPRPSARYAAAMSAQAQMRAMLDQLMGTSRDVLWSTGV
SVSAGFHQLVPQWECEEEIQLVNESNSVMTEYARVTFSTVVLMMSFLELHIVDKTEESLP
YGAHILRMDLGECLKVHDLALRADYEIASKEQDFFFELDAMDHLQSFIADCDRRTEVAKK
RLAETQEEISAEVAAKAERVHELNEEIGKLLAKVEQLGAEGNVEESQKVMDEVEKARAKK
REAEEVYRNSMPASSFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIEIREKLE
ELKRVVAEKQEKRNQERLKRREEREREEREKLRRYGVMGQVIEVESLWF

>gi568815591f:139260262_139522337|GENSCAN_predicted_CDS_2|1590_bp
atggcctcaacgcttcaaccggaagcagaaattgaccgcggcaggcgccatctaacggcc
gctggagcaaagctcctcctggaaattcgcaacaccggaaaaggtccggctgcttccggt
aaaaacccaccagagctgacgttcagagggcgagtctcgaagatccggccaatttgccca
gcgcgctgtgctccgcgacggcgcatgcccgcttttgcgcaggcgcggggactacggcgc
aggcgcggagactattgcgcaggcaagcgcgtacgcagaagcgtgcgcgcgcccgttcaa
cgtccggagcatcggtgcagtttcgagggacttctgcgggagttgcgctacctgagcgcg
gccaccggccgaccctatcgcgacaccgcggcctatcggtaccttgtgaaggctttccgt
gcacatcgggtcaccagtgaaaagttgtgcagagcccaacatgagcttcatttccaagct
gccacctatctctgcctcctgcgtagcatccggaaacatgtggccctacatcaggaattt
catggcaagggtgagcgctcggtggaggagtctgctggcttgcccaaaagggcccggtct
gcgccccacccccgcccgtccgcccgctacgccgccgccatgtcggcgcaggcccagatg
cgcgcgatgctggaccagttgatgggcacctcccgggacgtgctttggtccacgggggtc
agtgtttctgcaggatttcaccaactggttccacagtgggaatgtgaagaggagatacaa
ctcgtcaacgaatcaaattcagtgatgacagagtatgcaagagtcaccttctcaactgtt
gtcctcatgatgtcctttctggaactgcacatcgtagataaaacagaagaatccttgccc
tatggagctcacattttaagaatggatcttggagaatgtctgaaagtccatgacctggct
ttaagagcggattatgaaattgcatccaaagaacaagattttttctttgaacttgatgcc
atggatcatctgcagtcattcattgcagattgtgatcgtagaacagaagtggccaagaaa
agattagcagaaactcaagaagagattagtgctgaagtagcagcaaaggcagaacgtgtt
catgagttaaatgaagaaattggtaaattgttagccaaggtggaacaactaggagctgaa
gggaatgtggaggaatcccagaaagtaatggatgaagtagagaaagcacgggcaaagaaa
agagaagcagaggaagtttatcggaattctatgccagcttccagttttcagcagcagaaa
cttcgagtctgtgaagtctgctctgcctatttaggacttcatgataatgacagacgactg
gctgatcattttgggggtaaactgcacctgggatttattgaaataagagagaagcttgaa
gaattaaagagagtcgtagctgagaagcaggagaaaagaaaccaggaacggctgaaacga
agagaagagagagagagagaagaaagggagaagctgaggaggtatggagtaatgggccaa
gtaattgaagttgaatctctgtggttctaa

>gi568815591f:139260262_139522337|GENSCAN_predicted_peptide_3|482_aa
MEESWEAAPGGQAGAELPMEPVGSLVPTLEQPQVPAKVRQPEGPESSPSPAGAVEKAAGA
GLEPSSKKKPPSPRPGSPRVPPLSLGYGVCPEPPSPGPALVKLPRNGEAPGAEPAPSAWA
PMELQVDVRVKPVGAAGGSSTPSPRPSTRFLKVPVPESPAFSRHADPAHQLLLRAPSQGG
TWGRRSPLAAARTESGCDAEGRASPAEGSAGSPGSPTCCRCKELGLEKEDAALLPRAGLD
GDEKLPRAVTLTGLPMYVKSLYWALAFMAVLLAVSGVVIVVLASRAGARCQQCPPGWVLS
EEHCYYFSAEAQAWEASQAFCSAYHATLPLLSHTQDFLGRYPVSRHSWVGAWRGPQGWHW
IDEAPLPPQLLPEDGEDNLDINCGALEEGTLVAANCSTPRPWVANSIQRQNCADFSGGYG
CGYGCWSGTCGDGVSPEIWIEFSSCVHVTWSEIDVCDALWTWIYQTRFDFVSTFVITIFL
IY

>gi568815591f:139260262_139522337|GENSCAN_predicted_CDS_3|1449_bp
atggaggagtcttgggaggctgcgcccggaggccaagccggggcagagctcccaatggag
cccgtgggaagcctggtccccacgctggagcagccgcaggtgcccgcgaaggtgcgacaa
cctgaaggtcccgaaagcagcccaagtccggccggggccgtggagaaggcggcgggcgca
ggcctggagccctcgagcaagaaaaagccgccttcgcctcgccccgggtccccgcgcgtg
ccgccgctcagcctgggctacggggtctgccccgagccgccgtcaccgggccctgccttg
gtcaagctgccccggaatggcgaggcgcccggggctgagcctgcgcccagcgcctgggcg
cccatggagctgcaggtagatgtgcgcgtgaagcccgtgggcgcggccggtggcagcagc
acgccatcgcccaggccctccacgcgcttcctcaaggtgccggtgcccgagtcccctgcc
ttctcccgccacgcggacccggcgcaccagctcctgctgcgcgcaccatcccagggcggc
acgtggggccgccgctcgccgctggctgcagcccggacggagagcggctgcgacgcagag
ggccgggccagccccgcggaaggaagcgccggctccccgggctcccccacgtgctgccgc
tgcaaggagctggggctggagaaggaggatgcggcgctgttgccccgcgcggggttggac
ggcgacgagaagctgccccgggccgtaacgcttacggggctacccatgtacgtgaagtcc
ctgtactgggccctggcgttcatggctgtgctcctggcagtctctggggttgtcattgtg
gtcctggcctcaagagcaggagccagatgccagcagtgccccccaggctgggtgttgtcc
gaggagcactgttactacttctctgcagaagcgcaggcctgggaagccagccaggctttc
tgctcagcctaccacgctaccctccccctgctaagccacacccaggacttcctgggcaga
tacccagtctccaggcactcctgggtgggggcctggcgaggcccccagggctggcactgg
atcgacgaggccccactcccgccccagctactccctgaggacggcgaggacaatctggat
atcaactgtggggccctggaggaaggcacgctggtggctgcaaactgcagcactccaaga
ccctgggtagccaacagcatccagagacagaactgtgccgacttctctggtggctacggc
tgcggctacggctgctggagcgggacctgtggcgatggcgtttctcccgagatttggatc
gagttctcctcttgcgttcacgtgacatggagcgagatcgatgtctgcgatgctctctgg
acctggatctaccagacaagatttgattttgtttctacctttgtaattactatatttctc
atttattaa

>gi568815591f:139260262_139522337|GENSCAN_predicted_peptide_4|111_aa
MPVGGGPESVGRCNGCQCHIKGKGIYILNSERPVPGDYIYIRKKKQQNSDPQPKTHDLHG
LNQRETGDETFGEPGGLGEHKAAKGEKRCVWEPELPNDMLAFPLRSRAPLH

>gi568815591f:139260262_139522337|GENSCAN_predicted_CDS_4|336_bp
atgcctgtagggggtggccctgagagtgtgggcaggtgcaatggctgtcaatgccacata
aagggcaaggggatctacatcctaaacagtgaaagaccagtgcccggagactacatctac
atcaggaagaagaagcagcaaaattctgacccacagcccaagacccatgacctgcatgga
ctcaatcagcgggagactggggatgaaacattcggggaaccaggaggactaggggagcat
aaagcagcaaaaggggagaaaagatgtgtttgggagccggagctgcccaatgacatgctg
gctttcccacttaggagccgtgcacccctacactag

>gi568815591f:139260262_139522337|GENSCAN_predicted_peptide_5|349_aa
MDPRKVNELRAFVKTCKQDPSVPHAEKMHFLRERVESMAGKVPPATQKAKSEENTKEEKP
DSTDAPQEMGDENAEITEEMMDQANEKVAAIEALNDGELQTAIDLFPDAIKLNPHLAILY
AKTAAQPYKCREKAHRLSLQLDYDEDASAMLKEVQPGAQKIAEHRRKYERKREEQEIKER
IERVKKAQEEHERAQREEEARRQSGAQYCSFPSGFPAGVPGNCPRRMSGMGGGMAGMARI
PGLNEILSDPEILAAMQDPEIMLAFQDVAQDPANMSKYQRNTKTMHLISRLSAKFGEKSL
EQLRETFDHEKLSADSNHLMCVDQELTQPRLKSWAIISLTTFPTVGSGI

>gi568815591f:139260262_139522337|GENSCAN_predicted_CDS_5|1050_bp
atggacccccgcaaagtgaacgagcttcgggcctttgtgaaaacgtgtaagcaggatccg
agcgttccgcacgccgagaaaatgcatttcctaagggagagggtggagagcatggcgggt
aaagtaccacctgctactcagaaagctaaatcagaagaaaataccaaggaagaaaaacct
gatagcactgatgcccctcaagaaatgggagatgagaatgcagagataacagaggagatg
atggatcaggcaaatgagaaagtggctgctattgaagccctaaatgatggtgaactgcag
acagccattgacttgttcccagatgccatcaagctgaatcctcacttggccattttgtat
gccaagacggctgctcagccttacaagtgtcgagagaaagcacacagactttcccttcaa
ttggattatgatgaagatgctagtgcaatgctgaaagaagttcaacctggggcacagaaa
attgcagaacatcggagaaagtatgagcgaaaacgtgaagaacaagagatcaaagaaaga
atagaaagagttaagaaggctcaagaagagcatgagagagcccagagggaggaagaagcc
agaagacagtcaggagctcagtactgctcttttccaagtggctttcctgcgggagtgcct
ggtaattgtcccagaagaatgtctggaatgggagggggcatggctggaatggccagaatc
cccggactcaatgaaattcttagtgatccagagattcttgcagccatgcaggatccagaa
attatgttagccttccaggatgtggctcaggacccagcaaacatgtcaaaataccagcgc
aacacaaagactatgcatcttatcagtagattgtcagccaaatttggagaaaaatcattg
gagcagctgagggaaacatttgaccatgagaaattatctgctgattcaaaccacttgatg
tgcgtggaccaagaactcacccagccaaggctcaagtcctgggctataatatcactgacg
acatttcccacagttggctctgggatctga

>gi568815591f:139260262_139522337|GENSCAN_predicted_peptide_6|39_aa
XVCFGGNPKDNDPYGCERVHFLKKEVLMKMDKTHQDPPP

>gi568815591f:139260262_139522337|GENSCAN_predicted_CDS_6|120_bp
nnggtatgttttggggggaacccaaaagacaatgacccttacggctgtgaaagggtccac
ttcctcaagaaggaggtgctcatgaaaatggataaaacccatcaagaccccccgccctag