Result of FASTA (omim) for pF1KB6484
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6484, 356 aa
  1>>>pF1KB6484 356 - 356 aa - 356 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8339+/-0.000381; mu= 13.8572+/- 0.024
 mean_var=74.5511+/-14.730, 0's: 0 Z-trim(111.9): 46  B-trim: 0 in 0/53
 Lambda= 0.148541
 statistics sampled from 20598 (20643) to 20598 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.618), E-opt: 0.2 (0.242), width:  16
 Scan time:  6.250

The best scores are:                                      opt bits E(85289)
NP_002906 (OMIM: 600405) replication factor C subu ( 356) 2370 517.4 1.9e-146
NP_853536 (OMIM: 600405) replication factor C subu ( 305) 1961 429.7  4e-120
XP_011533477 (OMIM: 600405) PREDICTED: replication ( 297) 1954 428.2 1.1e-119
XP_016876171 (OMIM: 600405) PREDICTED: replication ( 293) 1953 428.0 1.3e-119
XP_016876170 (OMIM: 600405) PREDICTED: replication ( 297) 1953 428.0 1.3e-119
XP_011533476 (OMIM: 600405) PREDICTED: replication ( 297) 1953 428.0 1.3e-119
XP_011533475 (OMIM: 600405) PREDICTED: replication ( 298) 1953 428.0 1.3e-119
XP_016876169 (OMIM: 600405) PREDICTED: replication ( 313) 1953 428.0 1.4e-119
XP_011533474 (OMIM: 600405) PREDICTED: replication ( 343) 1953 428.0 1.5e-119
XP_016876172 (OMIM: 600405) PREDICTED: replication ( 291) 1799 395.0 1.1e-109
NP_001123584 (OMIM: 600407) replication factor C s ( 255)  252 63.5 6.1e-10
NP_853556 (OMIM: 600407) replication factor C subu ( 319)  252 63.5 7.4e-10
XP_011536947 (OMIM: 600407) PREDICTED: replication ( 340)  252 63.5 7.9e-10
XP_011536945 (OMIM: 600407) PREDICTED: replication ( 340)  252 63.5 7.9e-10
NP_031396 (OMIM: 600407) replication factor C subu ( 340)  252 63.5 7.9e-10
NP_001193730 (OMIM: 600407) replication factor C s ( 337)  247 62.4 1.6e-09
XP_016875268 (OMIM: 600407) PREDICTED: replication ( 304)  235 59.8 8.9e-09
NP_002907 (OMIM: 102577) replication factor C subu ( 363)  235 59.9   1e-08
NP_853551 (OMIM: 102577) replication factor C subu ( 363)  235 59.9   1e-08
NP_001265720 (OMIM: 600404) replication factor C s ( 253)  229 58.5 1.9e-08
XP_016867981 (OMIM: 600404) PREDICTED: replication ( 253)  229 58.5 1.9e-08
NP_852136 (OMIM: 600404) replication factor C subu ( 354)  229 58.6 2.5e-08
NP_001265721 (OMIM: 600404) replication factor C s ( 251)  218 56.2 9.4e-08
NP_001265722 (OMIM: 600404) replication factor C s ( 219)  180 48.0 2.4e-05
NP_002905 (OMIM: 600404) replication factor C subu ( 320)  181 48.3 2.8e-05
XP_016867982 (OMIM: 600404) PREDICTED: replication ( 217)  175 46.9 4.9e-05
XP_006716143 (OMIM: 600404) PREDICTED: replication ( 217)  175 46.9 4.9e-05


>>NP_002906 (OMIM: 600405) replication factor C subunit   (356 aa)
 initn: 2370 init1: 2370 opt: 2370  Z-score: 2750.2  bits: 517.4 E(85289): 1.9e-146
Smith-Waterman score: 2370; 100.0% identity (100.0% similar) in 356 aa overlap (1-356:1-356)

               10        20        30        40        50        60
pF1KB6 MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 LETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 LETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 AVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 AVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 TADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 TADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELL
              250       260       270       280       290       300

              310       320       330       340       350      
pF1KB6 HNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEGMMF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 HNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEGMMF
              310       320       330       340       350      

>>NP_853536 (OMIM: 600405) replication factor C subunit   (305 aa)
 initn: 1953 init1: 1953 opt: 1961  Z-score: 2277.5  bits: 429.7 E(85289): 4e-120
Smith-Waterman score: 1961; 97.4% identity (98.7% similar) in 304 aa overlap (1-304:1-303)

               10        20        30        40        50        60
pF1KB6 MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_853 MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_853 GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 LETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_853 LETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 AVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_853 AVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 TADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELL
       :::::::::::::::::::::::::::::::::::::::::::::::::::::.  .:  
NP_853 TADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKAC-KEES
              250       260       270       280       290          

              310       320       330       340       350      
pF1KB6 HNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEGMMF
       ..::                                                    
NP_853 RSCDIF                                                  
     300                                                       

>>XP_011533477 (OMIM: 600405) PREDICTED: replication fac  (297 aa)
 initn: 1978 init1: 1954 opt: 1954  Z-score: 2269.6  bits: 428.2 E(85289): 1.1e-119
Smith-Waterman score: 1954; 99.3% identity (100.0% similar) in 295 aa overlap (1-295:1-295)

               10        20        30        40        50        60
pF1KB6 MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 LETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 AVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 TADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELL
       :::::::::::::::::::::::::::::::::::::::::::::::::::::..     
XP_011 TADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKAVSQ   
              250       260       270       280       290          

              310       320       330       340       350      
pF1KB6 HNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEGMMF

>>XP_016876171 (OMIM: 600405) PREDICTED: replication fac  (293 aa)
 initn: 1953 init1: 1953 opt: 1953  Z-score: 2268.5  bits: 428.0 E(85289): 1.3e-119
Smith-Waterman score: 1953; 100.0% identity (100.0% similar) in 293 aa overlap (1-293:1-293)

               10        20        30        40        50        60
pF1KB6 MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 LETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 AVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 TADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELL
       :::::::::::::::::::::::::::::::::::::::::::::::::::::       
XP_016 TADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMK       
              250       260       270       280       290          

              310       320       330       340       350      
pF1KB6 HNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEGMMF

>>XP_016876170 (OMIM: 600405) PREDICTED: replication fac  (297 aa)
 initn: 1953 init1: 1953 opt: 1953  Z-score: 2268.5  bits: 428.0 E(85289): 1.3e-119
Smith-Waterman score: 1953; 100.0% identity (100.0% similar) in 293 aa overlap (1-293:1-293)

               10        20        30        40        50        60
pF1KB6 MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 LETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 AVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 TADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELL
       :::::::::::::::::::::::::::::::::::::::::::::::::::::       
XP_016 TADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKVWLL   
              250       260       270       280       290          

              310       320       330       340       350      
pF1KB6 HNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEGMMF

>>XP_011533476 (OMIM: 600405) PREDICTED: replication fac  (297 aa)
 initn: 1953 init1: 1953 opt: 1953  Z-score: 2268.5  bits: 428.0 E(85289): 1.3e-119
Smith-Waterman score: 1953; 100.0% identity (100.0% similar) in 293 aa overlap (1-293:1-293)

               10        20        30        40        50        60
pF1KB6 MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 LETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 AVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 TADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELL
       :::::::::::::::::::::::::::::::::::::::::::::::::::::       
XP_011 TADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKVWLL   
              250       260       270       280       290          

              310       320       330       340       350      
pF1KB6 HNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEGMMF

>>XP_011533475 (OMIM: 600405) PREDICTED: replication fac  (298 aa)
 initn: 1953 init1: 1953 opt: 1953  Z-score: 2268.4  bits: 428.0 E(85289): 1.3e-119
Smith-Waterman score: 1953; 100.0% identity (100.0% similar) in 293 aa overlap (1-293:1-293)

               10        20        30        40        50        60
pF1KB6 MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 LETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 AVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 TADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELL
       :::::::::::::::::::::::::::::::::::::::::::::::::::::       
XP_011 TADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKLMKRK  
              250       260       270       280       290          

              310       320       330       340       350      
pF1KB6 HNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEGMMF

>>XP_016876169 (OMIM: 600405) PREDICTED: replication fac  (313 aa)
 initn: 1953 init1: 1953 opt: 1953  Z-score: 2268.1  bits: 428.0 E(85289): 1.4e-119
Smith-Waterman score: 1953; 100.0% identity (100.0% similar) in 293 aa overlap (1-293:1-293)

               10        20        30        40        50        60
pF1KB6 MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 LETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 AVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 TADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELL
       :::::::::::::::::::::::::::::::::::::::::::::::::::::       
XP_016 TADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKLKDETGL
              250       260       270       280       290       300

              310       320       330       340       350      
pF1KB6 HNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEGMMF
                                                               
XP_016 SMITQSFIDPTHH                                           
              310                                              

>>XP_011533474 (OMIM: 600405) PREDICTED: replication fac  (343 aa)
 initn: 1953 init1: 1953 opt: 1953  Z-score: 2267.5  bits: 428.0 E(85289): 1.5e-119
Smith-Waterman score: 1953; 100.0% identity (100.0% similar) in 293 aa overlap (1-293:1-293)

               10        20        30        40        50        60
pF1KB6 MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 LETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 AVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 TADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELL
       :::::::::::::::::::::::::::::::::::::::::::::::::::::       
XP_011 TADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKMRNWIQL
              250       260       270       280       290       300

              310       320       330       340       350      
pF1KB6 HNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEGMMF
                                                               
XP_011 IMGATLINSQLPTKKWAVNTAQRTYVSMIKSPQCLFQNLIWSK             
              310       320       330       340                

>>XP_016876172 (OMIM: 600405) PREDICTED: replication fac  (291 aa)
 initn: 1799 init1: 1799 opt: 1799  Z-score: 2090.2  bits: 395.0 E(85289): 1.1e-109
Smith-Waterman score: 1799; 100.0% identity (100.0% similar) in 270 aa overlap (1-270:1-270)

               10        20        30        40        50        60
pF1KB6 MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 LETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 AVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 TADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELL
       ::::::::::::::::::::::::::::::                              
XP_016 TADQEIPETDWEVYLRETANAIVSQQTPQRHVRRNQEAVTYSEDLQRTTCY         
              250       260       270       280       290          




356 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 16:23:33 2016 done: Fri Nov  4 16:23:34 2016
 Total Scan time:  6.250 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]
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