Result of FASTA (ccds) for pF1KB6474
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6474, 355 aa
  1>>>pF1KB6474 355 - 355 aa - 355 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7509+/-0.000978; mu= 13.3340+/- 0.059
 mean_var=60.4250+/-11.994, 0's: 0 Z-trim(103.7): 24  B-trim: 0 in 0/48
 Lambda= 0.164993
 statistics sampled from 7521 (7531) to 7521 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.606), E-opt: 0.2 (0.231), width:  16
 Scan time:  2.670

The best scores are:                                      opt bits E(32554)
CCDS5638.1 PON1 gene_id:5444|Hs108|chr7            ( 355) 2353 568.8 2.5e-162
CCDS5640.1 PON2 gene_id:5445|Hs108|chr7            ( 354) 1634 397.6 8.2e-111
CCDS5639.1 PON3 gene_id:5446|Hs108|chr7            ( 354) 1497 365.0 5.4e-101
CCDS47644.1 PON2 gene_id:5445|Hs108|chr7           ( 342) 1101 270.7 1.2e-72


>>CCDS5638.1 PON1 gene_id:5444|Hs108|chr7                 (355 aa)
 initn: 2353 init1: 2353 opt: 2353  Z-score: 3027.8  bits: 568.8 E(32554): 2.5e-162
Smith-Waterman score: 2353; 100.0% identity (100.0% similar) in 355 aa overlap (1-355:1-355)

               10        20        30        40        50        60
pF1KB6 MAKLIALTLLGMGLALFRNHQSSYQTRLNALREVQPVELPNCNLVKGIETGSEDLEILPN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MAKLIALTLLGMGLALFRNHQSSYQTRLNALREVQPVELPNCNLVKGIETGSEDLEILPN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 GLAFISSGLKYPGIKSFNPNSPGKILLMDLNEEDPTVLELGITGSKFDVSSFNPHGISTF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 GLAFISSGLKYPGIKSFNPNSPGKILLMDLNEEDPTVLELGITGSKFDVSSFNPHGISTF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 TDEDNAMYLLVVNHPDAKSTVELFKFQEEEKSLLHLKTIRHKLLPNLNDIVAVGPEHFYG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 TDEDNAMYLLVVNHPDAKSTVELFKFQEEEKSLLHLKTIRHKLLPNLNDIVAVGPEHFYG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 TNDHYFLDPYLQSWEMYLGLAWSYVVYYSPSEVRVVAEGFDFANGINISPDGKYVYIAEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 TNDHYFLDPYLQSWEMYLGLAWSYVVYYSPSEVRVVAEGFDFANGINISPDGKYVYIAEL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 LAHKIHVYEKHANWTLTPLKSLDFNTLVDNISVDPETGDLWVGCHPNGMKIFFYDSENPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 LAHKIHVYEKHANWTLTPLKSLDFNTLVDNISVDPETGDLWVGCHPNGMKIFFYDSENPP
              250       260       270       280       290       300

              310       320       330       340       350     
pF1KB6 ASEVLRIQNILTEEPKVTQVYAENGTVLQGSTVASVYKGKLLIGTVFHKALYCEL
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 ASEVLRIQNILTEEPKVTQVYAENGTVLQGSTVASVYKGKLLIGTVFHKALYCEL
              310       320       330       340       350     

>>CCDS5640.1 PON2 gene_id:5445|Hs108|chr7                 (354 aa)
 initn: 1642 init1: 1258 opt: 1634  Z-score: 2102.9  bits: 397.6 E(32554): 8.2e-111
Smith-Waterman score: 1634; 65.9% identity (89.0% similar) in 355 aa overlap (1-355:1-354)

               10        20        30        40        50        60
pF1KB6 MAKLIALTLLGMGLALFRNHQSSYQTRLNALREVQPVELPNCNLVKGIETGSEDLEILPN
       :..:.:. :::..:::. ..  . ..::.: :::. :.::.:.:.::::.::::..::::
CCDS56 MGRLVAVGLLGIALALLGERLLALRNRLKASREVESVDLPHCHLIKGIEAGSEDIDILPN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 GLAFISSGLKYPGIKSFNPNSPGKILLMDLNEEDPTVLELGITGSKFDVSSFNPHGISTF
       ::::.: :::.::..:: :..:: ::.:::.:: : . :: :.   ::..::::::::::
CCDS56 GLAFFSVGLKFPGLHSFAPDKPGGILMMDLKEEKPRARELRIS-RGFDLASFNPHGISTF
               70        80        90       100        110         

              130       140       150       160       170       180
pF1KB6 TDEDNAMYLLVVNHPDAKSTVELFKFQEEEKSLLHLKTIRHKLLPNLNDIVAVGPEHFYG
        :.:...::.:::::. :.:::.:::.: :.:::::::..:.:::..:::.:::: :::.
CCDS56 IDNDDTVYLFVVNHPEFKNTVEIFKFEEAENSLLHLKTVKHELLPSVNDITAVGPAHFYA
     120       130       140       150       160       170         

              190       200       210       220       230       240
pF1KB6 TNDHYFLDPYLQSWEMYLGLAWSYVVYYSPSEVRVVAEGFDFANGINISPDGKYVYIAEL
       :::::: ::.:.  : ::.: :. ::::::.::.::::::: ::::::::: ::.:.:..
CCDS56 TNDHYFSDPFLKYLETYLNLHWANVVYYSPNEVKVVAEGFDSANGINISPDDKYIYVADI
     180       190       200       210       220       230         

              250       260       270       280       290       300
pF1KB6 LAHKIHVYEKHANWTLTPLKSLDFNTLVDNISVDPETGDLWVGCHPNGMKIFFYDSENPP
       :::.::: :::.: .:: :: :...:::::.:.:: .::.::::::::.:.: :: .:::
CCDS56 LAHEIHVLEKHTNMNLTQLKVLELDTLVDNLSIDPSSGDIWVGCHPNGQKLFVYDPNNPP
     240       250       260       270       280       290         

              310       320       330       340       350     
pF1KB6 ASEVLRIQNILTEEPKVTQVYAENGTVLQGSTVASVYKGKLLIGTVFHKALYCEL
       .::::::::::.:.: :: :::.::.:::::.::::: :::::::..:.::::::
CCDS56 SSEVLRIQNILSEKPTVTTVYANNGSVLQGSSVASVYDGKLLIGTLYHRALYCEL
     300       310       320       330       340       350    

>>CCDS5639.1 PON3 gene_id:5446|Hs108|chr7                 (354 aa)
 initn: 1488 init1: 1102 opt: 1497  Z-score: 1926.6  bits: 365.0 E(32554): 5.4e-101
Smith-Waterman score: 1497; 60.8% identity (85.6% similar) in 355 aa overlap (1-355:1-354)

               10        20        30        40        50        60
pF1KB6 MAKLIALTLLGMGLALFRNHQSSYQTRLNALREVQPVELPNCNLVKGIETGSEDLEILPN
       :.::.::.:::.::.:  .   ... :.:: :::.:::  ::.:.. .:.::::..:::.
CCDS56 MGKLVALVLLGVGLSLVGEMFLAFRERVNASREVEPVEPENCHLIEELESGSEDIDILPS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 GLAFISSGLKYPGIKSFNPNSPGKILLMDLNEEDPTVLELGITGSKFDVSSFNPHGISTF
       :::::::::::::. .: :. ::::.::::::..: .  : :.:. ::   ::::::: :
CCDS56 GLAFISSGLKYPGMPNFAPDEPGKIFLMDLNEQNPRAQALEISGG-FDKELFNPHGISIF
               70        80        90       100        110         

              130       140       150       160       170       180
pF1KB6 TDEDNAMYLLVVNHPDAKSTVELFKFQEEEKSLLHLKTIRHKLLPNLNDIVAVGPEHFYG
        :.::..:: :::::  :::::.:::.:...::..::::.:.:: ..::::..:::.::.
CCDS56 IDKDNTVYLYVVNHPHMKSTVEIFKFEEQQRSLVYLKTIKHELLKSVNDIVVLGPEQFYA
     120       130       140       150       160       170         

              190       200       210       220       230       240
pF1KB6 TNDHYFLDPYLQSWEMYLGLAWSYVVYYSPSEVRVVAEGFDFANGINISPDGKYVYIAEL
       : :::: .  :. .:: : : :.::..::: ::.:::.::  ::::..: : ::::.:..
CCDS56 TRDHYFTNSLLSFFEMILDLRWTYVLFYSPREVKVVAKGFCSANGITVSADQKYVYVADV
     180       190       200       210       220       230         

              250       260       270       280       290       300
pF1KB6 LAHKIHVYEKHANWTLTPLKSLDFNTLVDNISVDPETGDLWVGCHPNGMKIFFYDSENPP
        :..::..::: :: :: :: ....:::::..::: :::. .::::: ::.. :. :.::
CCDS56 AAKNIHIMEKHDNWDLTQLKVIQLGTLVDNLTVDPATGDILAGCHPNPMKLLNYNPEDPP
     240       250       260       270       280       290         

              310       320       330       340       350     
pF1KB6 ASEVLRIQNILTEEPKVTQVYAENGTVLQGSTVASVYKGKLLIGTVFHKALYCEL
       .::::::::.:.:.:.:. :::.::.::::..:::::.::.::::::::.:::::
CCDS56 GSEVLRIQNVLSEKPRVSTVYANNGSVLQGTSVASVYHGKILIGTVFHKTLYCEL
     300       310       320       330       340       350    

>>CCDS47644.1 PON2 gene_id:5445|Hs108|chr7                (342 aa)
 initn: 1569 init1: 1101 opt: 1101  Z-score: 1417.5  bits: 270.7 E(32554): 1.2e-72
Smith-Waterman score: 1538; 63.7% identity (85.6% similar) in 355 aa overlap (1-355:1-342)

               10        20        30        40        50        60
pF1KB6 MAKLIALTLLGMGLALFRNHQSSYQTRLNALREVQPVELPNCNLVKGIETGSEDLEILPN
       :..:.:. :::..:::. ..  . ..::.: :::. :.::.:.:.::::.::::..::::
CCDS47 MGRLVAVGLLGIALALLGERLLALRNRLKASREVESVDLPHCHLIKGIEAGSEDIDILPN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 GLAFISSGLKYPGIKSFNPNSPGKILLMDLNEEDPTVLELGITGSKFDVSSFNPHGISTF
       ::::.: :::.::..:: :..:: ::.:::.:: : . :: :.   ::..::::::::::
CCDS47 GLAFFSVGLKFPGLHSFAPDKPGGILMMDLKEEKPRARELRIS-RGFDLASFNPHGISTF
               70        80        90       100        110         

              130       140       150       160       170       180
pF1KB6 TDEDNAMYLLVVNHPDAKSTVELFKFQEEEKSLLHLKTIRHKLLPNLNDIVAVGPEHFYG
        :..             :.:::.:::.: :.:::::::..:.:::..:::.:::: :::.
CCDS47 IDNE------------FKNTVEIFKFEEAENSLLHLKTVKHELLPSVNDITAVGPAHFYA
     120                   130       140       150       160       

              190       200       210       220       230       240
pF1KB6 TNDHYFLDPYLQSWEMYLGLAWSYVVYYSPSEVRVVAEGFDFANGINISPDGKYVYIAEL
       :::::: ::.:.  : ::.: :. ::::::.::.::::::: ::::::::: ::.:.:..
CCDS47 TNDHYFSDPFLKYLETYLNLHWANVVYYSPNEVKVVAEGFDSANGINISPDDKYIYVADI
       170       180       190       200       210       220       

              250       260       270       280       290       300
pF1KB6 LAHKIHVYEKHANWTLTPLKSLDFNTLVDNISVDPETGDLWVGCHPNGMKIFFYDSENPP
       :::.::: :::.: .:: :: :...:::::.:.:: .::.::::::::.:.: :: .:::
CCDS47 LAHEIHVLEKHTNMNLTQLKVLELDTLVDNLSIDPSSGDIWVGCHPNGQKLFVYDPNNPP
       230       240       250       260       270       280       

              310       320       330       340       350     
pF1KB6 ASEVLRIQNILTEEPKVTQVYAENGTVLQGSTVASVYKGKLLIGTVFHKALYCEL
       .::::::::::.:.: :: :::.::.:::::.::::: :::::::..:.::::::
CCDS47 SSEVLRIQNILSEKPTVTTVYANNGSVLQGSSVASVYDGKLLIGTLYHRALYCEL
       290       300       310       320       330       340  




355 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 16:31:46 2016 done: Fri Nov  4 16:31:46 2016
 Total Scan time:  2.670 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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