Result of FASTA (omim) for pF1KB6430
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6430, 343 aa
  1>>>pF1KB6430 343 - 343 aa - 343 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1697+/-0.000371; mu= 17.4336+/- 0.023
 mean_var=78.3649+/-16.184, 0's: 0 Z-trim(114.6): 147  B-trim: 1114 in 2/50
 Lambda= 0.144882
 statistics sampled from 24356 (24526) to 24356 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.669), E-opt: 0.2 (0.288), width:  16
 Scan time:  8.010

The best scores are:                                      opt bits E(85289)
XP_016866305 (OMIM: 142871,600807) PREDICTED: HLA  ( 343) 2355 501.8  9e-142
NP_002118 (OMIM: 142871,600807) HLA class I histoc ( 338) 2320 494.4 1.4e-139
NP_002107 (OMIM: 142800,608579) HLA class I histoc ( 365) 1968 420.9 2.1e-117
NP_001229687 (OMIM: 142800,608579) HLA class I his ( 365) 1941 415.3 1.1e-115
XP_016885777 (OMIM: 142800,608579) PREDICTED: HLA  ( 362) 1897 406.1 6.2e-113
XP_005275388 (OMIM: 142800,608579) PREDICTED: HLA  ( 391) 1897 406.1 6.5e-113
NP_005505 (OMIM: 106300,142830,608579) major histo ( 362) 1891 404.8 1.5e-112
NP_001229971 (OMIM: 142840,177900,609423) HLA clas ( 366) 1865 399.4 6.4e-111
NP_002108 (OMIM: 142840,177900,609423) HLA class I ( 366) 1856 397.5 2.4e-110
NP_061823 (OMIM: 143110) HLA class I histocompatib ( 346) 1841 394.3  2e-109
XP_016866302 (OMIM: 143110) PREDICTED: HLA class I ( 388) 1841 394.4 2.2e-109
XP_016866301 (OMIM: 143110) PREDICTED: HLA class I ( 420) 1841 394.4 2.3e-109
XP_016866299 (OMIM: 143110) PREDICTED: HLA class I ( 435) 1841 394.4 2.4e-109
NP_001091949 (OMIM: 143110) HLA class I histocompa ( 442) 1841 394.4 2.4e-109
XP_011512866 (OMIM: 143110) PREDICTED: HLA class I ( 343) 1833 392.7 6.3e-109
XP_016866300 (OMIM: 143110) PREDICTED: HLA class I ( 431) 1833 392.7 7.5e-109
NP_005507 (OMIM: 143010) HLA class I histocompatib ( 358) 1812 388.3 1.4e-107
XP_016866298 (OMIM: 143010) PREDICTED: HLA class I ( 359) 1812 388.3 1.4e-107
XP_011512859 (OMIM: 106300,142830,608579) PREDICTE ( 323) 1742 373.6 3.2e-103
XP_016866296 (OMIM: 143010) PREDICTED: HLA class I ( 399) 1734 372.0 1.2e-102
XP_016866297 (OMIM: 143010) PREDICTED: HLA class I ( 399) 1734 372.0 1.2e-102
XP_016866304 (OMIM: 143110) PREDICTED: HLA class I ( 228) 1235 267.5   2e-71
XP_016866303 (OMIM: 143110) PREDICTED: HLA class I ( 324) 1235 267.6 2.6e-71
NP_001091948 (OMIM: 143110) HLA class I histocompa ( 254) 1033 225.3 1.1e-58
XP_016866307 (OMIM: 142871,600807) PREDICTED: HLA  ( 246)  910 199.6 5.9e-51
XP_016866306 (OMIM: 142871,600807) PREDICTED: HLA  ( 246)  910 199.6 5.9e-51
NP_001522 (OMIM: 600764) major histocompatibility  ( 341)  796 175.9 1.1e-43
NP_001287678 (OMIM: 104300,176100,176200,235200,61 ( 337)  718 159.6 8.9e-39
NP_000401 (OMIM: 104300,176100,176200,235200,61263 ( 348)  718 159.6 9.2e-39
XP_011512845 (OMIM: 104300,176100,176200,235200,61 ( 348)  718 159.6 9.2e-39
NP_620578 (OMIM: 104300,176100,176200,235200,61263 ( 325)  677 151.0 3.3e-36
NP_001176 (OMIM: 194460) zinc-alpha-2-glycoprotein ( 298)  658 147.0 4.9e-35
XP_011507765 (OMIM: 600764) PREDICTED: major histo ( 254)  593 133.4 5.3e-31
NP_620576 (OMIM: 104300,176100,176200,235200,61263 ( 260)  558 126.1 8.6e-29
NP_001170990 (OMIM: 600169) MHC class I polypeptid ( 332)  508 115.7 1.4e-25
NP_000238 (OMIM: 600169) MHC class I polypeptide-r ( 383)  491 112.2 1.9e-24
NP_001181929 (OMIM: 600764) major histocompatibili ( 249)  486 111.0 2.8e-24
NP_001181964 (OMIM: 600764) major histocompatibili ( 214)  485 110.7 2.9e-24
NP_005922 (OMIM: 602436) MHC class I polypeptide-r ( 383)  464 106.5 9.4e-23
NP_001181928 (OMIM: 600764) major histocompatibili ( 296)  436 100.6 4.5e-21
NP_001276089 (OMIM: 602436) MHC class I polypeptid ( 351)  433 100.0 7.9e-21
NP_004098 (OMIM: 601437) IgG receptor FcRn large s ( 365)  415 96.3 1.1e-19
NP_001129491 (OMIM: 601437) IgG receptor FcRn larg ( 365)  415 96.3 1.1e-19
NP_001276082 (OMIM: 600169) MHC class I polypeptid ( 235)  363 85.3 1.5e-16
NP_001276081 (OMIM: 600169) MHC class I polypeptid ( 235)  363 85.3 1.5e-16
NP_620573 (OMIM: 104300,176100,176200,235200,61263 ( 256)  360 84.7 2.4e-16
NP_620579 (OMIM: 104300,176100,176200,235200,61263 ( 168)  352 82.8 5.7e-16
NP_001297142 (OMIM: 600764) major histocompatibili ( 178)  334 79.1   8e-15
NP_001307581 (OMIM: 188370) T-cell surface glycopr ( 316)  332 78.9 1.7e-14
NP_001754 (OMIM: 188370) T-cell surface glycoprote ( 327)  332 78.9 1.7e-14


>>XP_016866305 (OMIM: 142871,600807) PREDICTED: HLA clas  (343 aa)
 initn: 2355 init1: 2355 opt: 2355  Z-score: 2666.2  bits: 501.8 E(85289): 9e-142
Smith-Waterman score: 2355; 100.0% identity (100.0% similar) in 343 aa overlap (1-343:1-343)

               10        20        30        40        50        60
pF1KB6 MKTPRMVVMAPRTLFLLLSGALTLTETWAGSHSMRYFSAAVSRPGRGEPRFIAMGYVDDT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MKTPRMVVMAPRTLFLLLSGALTLTETWAGSHSMRYFSAAVSRPGRGEPRFIAMGYVDDT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 QFVRFDSDSACPRMEPRAPWVEQEGPEYWEEETRNTKAHAQTDRMNLQTLRGYYNQSEAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QFVRFDSDSACPRMEPRAPWVEQEGPEYWEEETRNTKAHAQTDRMNLQTLRGYYNQSEAS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 SHTLQWMIGCDLGSDGRLLRGYEQYAYDGKDYLALNEDLRSWTAADTAAQISKRKCEAAN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SHTLQWMIGCDLGSDGRLLRGYEQYAYDGKDYLALNEDLRSWTAADTAAQISKRKCEAAN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 VAEQRRAYLEGTCVEWLHRYLENGKEMLQRADPPKTHVTHHPVFDYEATLRCWALGFYPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VAEQRRAYLEGTCVEWLHRYLENGKEMLQRADPPKTHVTHHPVFDYEATLRCWALGFYPA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 EIILTWQRDGEDQTQDVELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPLM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EIILTWQRDGEDQTQDVELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPLM
              250       260       270       280       290       300

              310       320       330       340   
pF1KB6 LRWKQSSLPTIPIMGIVAGLVVLAAVVTGAAVAAVLWRKKSSD
       :::::::::::::::::::::::::::::::::::::::::::
XP_016 LRWKQSSLPTIPIMGIVAGLVVLAAVVTGAAVAAVLWRKKSSD
              310       320       330       340   

>>NP_002118 (OMIM: 142871,600807) HLA class I histocompa  (338 aa)
 initn: 2320 init1: 2320 opt: 2320  Z-score: 2626.8  bits: 494.4 E(85289): 1.4e-139
Smith-Waterman score: 2320; 100.0% identity (100.0% similar) in 338 aa overlap (6-343:1-338)

               10        20        30        40        50        60
pF1KB6 MKTPRMVVMAPRTLFLLLSGALTLTETWAGSHSMRYFSAAVSRPGRGEPRFIAMGYVDDT
            :::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002      MVVMAPRTLFLLLSGALTLTETWAGSHSMRYFSAAVSRPGRGEPRFIAMGYVDDT
                    10        20        30        40        50     

               70        80        90       100       110       120
pF1KB6 QFVRFDSDSACPRMEPRAPWVEQEGPEYWEEETRNTKAHAQTDRMNLQTLRGYYNQSEAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 QFVRFDSDSACPRMEPRAPWVEQEGPEYWEEETRNTKAHAQTDRMNLQTLRGYYNQSEAS
          60        70        80        90       100       110     

              130       140       150       160       170       180
pF1KB6 SHTLQWMIGCDLGSDGRLLRGYEQYAYDGKDYLALNEDLRSWTAADTAAQISKRKCEAAN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 SHTLQWMIGCDLGSDGRLLRGYEQYAYDGKDYLALNEDLRSWTAADTAAQISKRKCEAAN
         120       130       140       150       160       170     

              190       200       210       220       230       240
pF1KB6 VAEQRRAYLEGTCVEWLHRYLENGKEMLQRADPPKTHVTHHPVFDYEATLRCWALGFYPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 VAEQRRAYLEGTCVEWLHRYLENGKEMLQRADPPKTHVTHHPVFDYEATLRCWALGFYPA
         180       190       200       210       220       230     

              250       260       270       280       290       300
pF1KB6 EIILTWQRDGEDQTQDVELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPLM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 EIILTWQRDGEDQTQDVELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPLM
         240       250       260       270       280       290     

              310       320       330       340   
pF1KB6 LRWKQSSLPTIPIMGIVAGLVVLAAVVTGAAVAAVLWRKKSSD
       :::::::::::::::::::::::::::::::::::::::::::
NP_002 LRWKQSSLPTIPIMGIVAGLVVLAAVVTGAAVAAVLWRKKSSD
         300       310       320       330        

>>NP_002107 (OMIM: 142800,608579) HLA class I histocompa  (365 aa)
 initn: 1968 init1: 1968 opt: 1968  Z-score: 2228.7  bits: 420.9 E(85289): 2.1e-117
Smith-Waterman score: 1968; 82.8% identity (95.0% similar) in 338 aa overlap (6-343:1-338)

               10        20        30        40        50        60
pF1KB6 MKTPRMVVMAPRTLFLLLSGALTLTETWAGSHSMRYFSAAVSRPGRGEPRFIAMGYVDDT
            :.:::::::.:::::::.::.::::::::::: ..:::::::::::::.::::::
NP_002      MAVMAPRTLLLLLSGALALTQTWAGSHSMRYFFTSVSRPGRGEPRFIAVGYVDDT
                    10        20        30        40        50     

               70        80        90       100       110       120
pF1KB6 QFVRFDSDSACPRMEPRAPWVEQEGPEYWEEETRNTKAHAQTDRMNLQTLRGYYNQSEAS
       ::::::::.:  ::::::::.::::::::..::::.::..::::..: :::::::::::.
NP_002 QFVRFDSDAASQRMEPRAPWIEQEGPEYWDQETRNVKAQSQTDRVDLGTLRGYYNQSEAG
          60        70        80        90       100       110     

              130       140       150       160       170       180
pF1KB6 SHTLQWMIGCDLGSDGRLLRGYEQYAYDGKDYLALNEDLRSWTAADTAAQISKRKCEAAN
       :::.: : :::.:::::.::::.: :::::::.::::::::::::: ::::.::: :::.
NP_002 SHTIQIMYGCDVGSDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAAH
         120       130       140       150       160       170     

              190       200       210       220       230       240
pF1KB6 VAEQRRAYLEGTCVEWLHRYLENGKEMLQRADPPKTHVTHHPVFDYEATLRCWALGFYPA
        ::: ::::.:::::::.:::::::: :::.::::::.::::. :.::::::::::::::
NP_002 EAEQLRAYLDGTCVEWLRRYLENGKETLQRTDPPKTHMTHHPISDHEATLRCWALGFYPA
         180       190       200       210       220       230     

              250       260       270       280       290       300
pF1KB6 EIILTWQRDGEDQTQDVELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPLM
       :: :::::::::::::.:::::::::::::::::::::::::::::::::::::::.:: 
NP_002 EITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLT
         240       250       260       270       280       290     

              310       320       330       340                    
pF1KB6 LRWKQSSLPTIPIMGIVAGLVVLAAVVTGAAVAAVLWRKKSSD                 
       :::. :: :::::.::.::::.:.::.:::.::::.::.::::                 
NP_002 LRWELSSQPTIPIVGIIAGLVLLGAVITGAVVAAVMWRRKSSDRKGGSYTQAASSDSAQG
         300       310       320       330       340       350     

NP_002 SDVSLTACKV
         360     

>>NP_001229687 (OMIM: 142800,608579) HLA class I histoco  (365 aa)
 initn: 1941 init1: 1941 opt: 1941  Z-score: 2198.2  bits: 415.3 E(85289): 1.1e-115
Smith-Waterman score: 1941; 81.7% identity (93.8% similar) in 338 aa overlap (6-343:1-338)

               10        20        30        40        50        60
pF1KB6 MKTPRMVVMAPRTLFLLLSGALTLTETWAGSHSMRYFSAAVSRPGRGEPRFIAMGYVDDT
            :.:::::::.:::::::.::.::::::::::: ..:::::::::::::.::::::
NP_001      MAVMAPRTLLLLLSGALALTQTWAGSHSMRYFFTSVSRPGRGEPRFIAVGYVDDT
                    10        20        30        40        50     

               70        80        90       100       110       120
pF1KB6 QFVRFDSDSACPRMEPRAPWVEQEGPEYWEEETRNTKAHAQTDRMNLQTLRGYYNQSEAS
       ::::::::.:  .:::::::.::::::::..:::: :::.:::: :: :::::::::: .
NP_001 QFVRFDSDAASQKMEPRAPWIEQEGPEYWDQETRNMKAHSQTDRANLGTLRGYYNQSEDG
          60        70        80        90       100       110     

              130       140       150       160       170       180
pF1KB6 SHTLQWMIGCDLGSDGRLLRGYEQYAYDGKDYLALNEDLRSWTAADTAAQISKRKCEAAN
       :::.: : :::.: :::.::::.: :::::::.::::::::::::: ::::.::: ::..
NP_001 SHTIQIMYGCDVGPDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAVH
         120       130       140       150       160       170     

              190       200       210       220       230       240
pF1KB6 VAEQRRAYLEGTCVEWLHRYLENGKEMLQRADPPKTHVTHHPVFDYEATLRCWALGFYPA
       .:::::.:::: ::. :.:::::::: :::.::::::.::::. :.::::::::::::::
NP_001 AAEQRRVYLEGRCVDGLRRYLENGKETLQRTDPPKTHMTHHPISDHEATLRCWALGFYPA
         180       190       200       210       220       230     

              250       260       270       280       290       300
pF1KB6 EIILTWQRDGEDQTQDVELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPLM
       :: :::::::::::::.:::::::::::::::::::::::::::::::::::::::.:: 
NP_001 EITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLT
         240       250       260       270       280       290     

              310       320       330       340                    
pF1KB6 LRWKQSSLPTIPIMGIVAGLVVLAAVVTGAAVAAVLWRKKSSD                 
       :::. :: :::::.::.::::.:.::.:::.::::.::.::::                 
NP_001 LRWELSSQPTIPIVGIIAGLVLLGAVITGAVVAAVMWRRKSSDRKGGSYTQAASSDSAQG
         300       310       320       330       340       350     

NP_001 SDVSLTACKV
         360     

>>XP_016885777 (OMIM: 142800,608579) PREDICTED: HLA clas  (362 aa)
 initn: 1897 init1: 1897 opt: 1897  Z-score: 2148.5  bits: 406.1 E(85289): 6.2e-113
Smith-Waterman score: 1897; 81.2% identity (93.4% similar) in 335 aa overlap (9-343:1-335)

               10        20        30        40        50        60
pF1KB6 MKTPRMVVMAPRTLFLLLSGALTLTETWAGSHSMRYFSAAVSRPGRGEPRFIAMGYVDDT
               :::::: :::::::.::.::::::::::: ..:::::::::::::.::::::
XP_016         MAPRTLVLLLSGALALTQTWAGSHSMRYFFTSVSRPGRGEPRFIAVGYVDDT
                       10        20        30        40        50  

               70        80        90       100       110       120
pF1KB6 QFVRFDSDSACPRMEPRAPWVEQEGPEYWEEETRNTKAHAQTDRMNLQTLRGYYNQSEAS
       ::::::::.:  ::::::::.::::::::. :::..:::.:: :..: :::::::::::.
XP_016 QFVRFDSDAASQRMEPRAPWIEQEGPEYWDGETRKVKAHSQTHRVDLGTLRGYYNQSEAG
             60        70        80        90       100       110  

              130       140       150       160       170       180
pF1KB6 SHTLQWMIGCDLGSDGRLLRGYEQYAYDGKDYLALNEDLRSWTAADTAAQISKRKCEAAN
       :::.: : :::.::: :.::::.:::::::::.::.:::::::::: ::: .:.: :::.
XP_016 SHTVQRMYGCDVGSDWRFLRGYHQYAYDGKDYIALKEDLRSWTAADMAAQTTKHKWEAAH
            120       130       140       150       160       170  

              190       200       210       220       230       240
pF1KB6 VAEQRRAYLEGTCVEWLHRYLENGKEMLQRADPPKTHVTHHPVFDYEATLRCWALGFYPA
       :::: ::::::::::::.:::::::: :::.: ::::.::: : :.:::::::::.::::
XP_016 VAEQLRAYLEGTCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEATLRCWALSFYPA
            180       190       200       210       220       230  

              250       260       270       280       290       300
pF1KB6 EIILTWQRDGEDQTQDVELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPLM
       :: :::::::::::::.::::::::::::::::::::::::.::::::::::::::.:: 
XP_016 EITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHVQHEGLPKPLT
            240       250       260       270       280       290  

              310       320       330       340                    
pF1KB6 LRWKQSSLPTIPIMGIVAGLVVLAAVVTGAAVAAVLWRKKSSD                 
       :::. :: :::::.::.::::...::.:::.::::.::.::::                 
XP_016 LRWEPSSQPTIPIVGIIAGLVLFGAVITGAVVAAVMWRRKSSDRKGGSYSQAASSDSAQG
            300       310       320       330       340       350  

XP_016 SDVSLTACKV
            360  

>>XP_005275388 (OMIM: 142800,608579) PREDICTED: HLA clas  (391 aa)
 initn: 1897 init1: 1897 opt: 1897  Z-score: 2148.1  bits: 406.1 E(85289): 6.5e-113
Smith-Waterman score: 1897; 81.2% identity (93.4% similar) in 335 aa overlap (9-343:1-335)

               10        20        30        40        50        60
pF1KB6 MKTPRMVVMAPRTLFLLLSGALTLTETWAGSHSMRYFSAAVSRPGRGEPRFIAMGYVDDT
               :::::: :::::::.::.::::::::::: ..:::::::::::::.::::::
XP_005         MAPRTLVLLLSGALALTQTWAGSHSMRYFFTSVSRPGRGEPRFIAVGYVDDT
                       10        20        30        40        50  

               70        80        90       100       110       120
pF1KB6 QFVRFDSDSACPRMEPRAPWVEQEGPEYWEEETRNTKAHAQTDRMNLQTLRGYYNQSEAS
       ::::::::.:  ::::::::.::::::::. :::..:::.:: :..: :::::::::::.
XP_005 QFVRFDSDAASQRMEPRAPWIEQEGPEYWDGETRKVKAHSQTHRVDLGTLRGYYNQSEAG
             60        70        80        90       100       110  

              130       140       150       160       170       180
pF1KB6 SHTLQWMIGCDLGSDGRLLRGYEQYAYDGKDYLALNEDLRSWTAADTAAQISKRKCEAAN
       :::.: : :::.::: :.::::.:::::::::.::.:::::::::: ::: .:.: :::.
XP_005 SHTVQRMYGCDVGSDWRFLRGYHQYAYDGKDYIALKEDLRSWTAADMAAQTTKHKWEAAH
            120       130       140       150       160       170  

              190       200       210       220       230       240
pF1KB6 VAEQRRAYLEGTCVEWLHRYLENGKEMLQRADPPKTHVTHHPVFDYEATLRCWALGFYPA
       :::: ::::::::::::.:::::::: :::.: ::::.::: : :.:::::::::.::::
XP_005 VAEQLRAYLEGTCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEATLRCWALSFYPA
            180       190       200       210       220       230  

              250       260       270       280       290       300
pF1KB6 EIILTWQRDGEDQTQDVELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPLM
       :: :::::::::::::.::::::::::::::::::::::::.::::::::::::::.:: 
XP_005 EITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHVQHEGLPKPLT
            240       250       260       270       280       290  

              310       320       330       340                    
pF1KB6 LRWKQSSLPTIPIMGIVAGLVVLAAVVTGAAVAAVLWRKKSSD                 
       :::. :: :::::.::.::::...::.:::.::::.::.::::                 
XP_005 LRWEPSSQPTIPIVGIIAGLVLFGAVITGAVVAAVMWRRKSSDRKGGSYSQAASSDSAQG
            300       310       320       330       340       350  

XP_005 SDVSLTACKGESLEGLMCVGCWAEQWTQLCYGVSFHWMY
            360       370       380       390 

>>NP_005505 (OMIM: 106300,142830,608579) major histocomp  (362 aa)
 initn: 1891 init1: 1891 opt: 1891  Z-score: 2141.8  bits: 404.8 E(85289): 1.5e-112
Smith-Waterman score: 1891; 81.0% identity (93.2% similar) in 337 aa overlap (6-342:1-337)

               10        20        30        40        50        60
pF1KB6 MKTPRMVVMAPRTLFLLLSGALTLTETWAGSHSMRYFSAAVSRPGRGEPRFIAMGYVDDT
            :.::::::..::::.::.:::::::::::::: ..::::::::::::..::::::
NP_005      MLVMAPRTVLLLLSAALALTETWAGSHSMRYFYTSVSRPGRGEPRFISVGYVDDT
                    10        20        30        40        50     

               70        80        90       100       110       120
pF1KB6 QFVRFDSDSACPRMEPRAPWVEQEGPEYWEEETRNTKAHAQTDRMNLQTLRGYYNQSEAS
       ::::::::.: :: ::::::.::::::::...:.  ::.::::: .:..::::::::::.
NP_005 QFVRFDSDAASPREEPRAPWIEQEGPEYWDRNTQIYKAQAQTDRESLRNLRGYYNQSEAG
          60        70        80        90       100       110     

              130       140       150       160       170       180
pF1KB6 SHTLQWMIGCDLGSDGRLLRGYEQYAYDGKDYLALNEDLRSWTAADTAAQISKRKCEAAN
       ::::: : :::.: :::::::..:::::::::.::::::::::::::::::..:: ::: 
NP_005 SHTLQSMYGCDVGPDGRLLRGHDQYAYDGKDYIALNEDLRSWTAADTAAQITQRKWEAAR
         120       130       140       150       160       170     

              190       200       210       220       230       240
pF1KB6 VAEQRRAYLEGTCVEWLHRYLENGKEMLQRADPPKTHVTHHPVFDYEATLRCWALGFYPA
        :::::::::: :::::.:::::::. :.:::::::::::::. :.::::::::::::::
NP_005 EAEQRRAYLEGECVEWLRRYLENGKDKLERADPPKTHVTHHPISDHEATLRCWALGFYPA
         180       190       200       210       220       230     

              250       260       270       280       290       300
pF1KB6 EIILTWQRDGEDQTQDVELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPLM
       :: :::::::::::::.:::::::::: ::::::::::::::::::::::::::::.:: 
NP_005 EITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLT
         240       250       260       270       280       290     

              310       320       330       340                    
pF1KB6 LRWKQSSLPTIPIMGIVAGLVVLAAVVTGAAVAAVLWRKKSSD                 
       :::. ::  :.::.::::::.:::.:: ::.::::. :.:::                  
NP_005 LRWEPSSQSTVPIVGIVAGLAVLAVVVIGAVVAAVMCRRKSSGGKGGSYSQAACSDSAQG
         300       310       320       330       340       350     

NP_005 SDVSLTA
         360  

>>NP_001229971 (OMIM: 142840,177900,609423) HLA class I   (366 aa)
 initn: 1907 init1: 1830 opt: 1865  Z-score: 2112.3  bits: 399.4 E(85289): 6.4e-111
Smith-Waterman score: 1865; 80.5% identity (92.6% similar) in 338 aa overlap (6-342:1-338)

               10        20        30        40        50        60
pF1KB6 MKTPRMVVMAPRTLFLLLSGALTLTETWAGSHSMRYFSAAVSRPGRGEPRFIAMGYVDDT
            : :::::.:.:::::.:.:::::: :::::::..:::::::::::::..::::::
NP_001      MRVMAPRALLLLLSGGLALTETWACSHSMRYFDTAVSRPGRGEPRFISVGYVDDT
                    10        20        30        40        50     

               70        80        90       100       110       120
pF1KB6 QFVRFDSDSACPRMEPRAPWVEQEGPEYWEEETRNTKAHAQTDRMNLQTLRGYYNQSEAS
       ::::::::.: :: :::::::::::::::..::.: : .::.::..:..::::::::: .
NP_001 QFVRFDSDAASPRGEPRAPWVEQEGPEYWDRETQNYKRQAQADRVSLRNLRGYYNQSEDG
          60        70        80        90       100       110     

              130       140       150       160       170       180
pF1KB6 SHTLQWMIGCDLGSDGRLLRGYEQYAYDGKDYLALNEDLRSWTAADTAAQISKRKCEAAN
       ::::: : ::::: ::::::::.: :::::::.::::::::::::::::::..:: ::: 
NP_001 SHTLQRMYGCDLGPDGRLLRGYDQSAYDGKDYIALNEDLRSWTAADTAAQITQRKLEAAR
         120       130       140       150       160       170     

              190       200       210       220       230       240
pF1KB6 VAEQRRAYLEGTCVEWLHRYLENGKEMLQRADPPKTHVTHHPVFDYEATLRCWALGFYPA
       .::: ::::::::::::.:::::::: ::::.::::::::::. :.::::::::::::::
NP_001 AAEQLRAYLEGTCVEWLRRYLENGKETLQRAEPPKTHVTHHPLSDHEATLRCWALGFYPA
         180       190       200       210       220       230     

              250       260       270       280       290       300
pF1KB6 EIILTWQRDGEDQTQDVELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPLM
       :: :::::::::::::.::::::::::::::::::::::::.:::::::.::::: ::: 
NP_001 EITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHMQHEGLQEPLT
         240       250       260       270       280       290     

              310       320        330       340                   
pF1KB6 LRWKQSSLPTIPIMGIVAGLVVLAAV-VTGAAVAAVLWRKKSSD                
       : :. :: ::::::::::::.::... : ::.:.:.. :.:::                 
NP_001 LSWEPSSQPTIPIMGIVAGLAVLVVLAVLGAVVTAMMCRRKSSGGKGGSCSQAACSNSAQ
         300       310       320       330       340       350     

NP_001 GSDESLITCKA
         360      

>>NP_002108 (OMIM: 142840,177900,609423) HLA class I his  (366 aa)
 initn: 1898 init1: 1821 opt: 1856  Z-score: 2102.2  bits: 397.5 E(85289): 2.4e-110
Smith-Waterman score: 1856; 80.2% identity (92.6% similar) in 338 aa overlap (6-342:1-338)

               10        20        30        40        50        60
pF1KB6 MKTPRMVVMAPRTLFLLLSGALTLTETWAGSHSMRYFSAAVSRPGRGEPRFIAMGYVDDT
            : :::::.:.:::::.:.:::::: :::::::..:::::::::::::..::::::
NP_002      MRVMAPRALLLLLSGGLALTETWACSHSMRYFDTAVSRPGRGEPRFISVGYVDDT
                    10        20        30        40        50     

               70        80        90       100       110       120
pF1KB6 QFVRFDSDSACPRMEPRAPWVEQEGPEYWEEETRNTKAHAQTDRMNLQTLRGYYNQSEAS
       ::::::::.: :: :::::::::::::::..::.. : .::.::..:..::::::::: .
NP_002 QFVRFDSDAASPRGEPRAPWVEQEGPEYWDRETQKYKRQAQADRVSLRNLRGYYNQSEDG
          60        70        80        90       100       110     

              130       140       150       160       170       180
pF1KB6 SHTLQWMIGCDLGSDGRLLRGYEQYAYDGKDYLALNEDLRSWTAADTAAQISKRKCEAAN
       ::::: : ::::: ::::::::.: :::::::.::::::::::::::::::..:: ::: 
NP_002 SHTLQRMSGCDLGPDGRLLRGYDQSAYDGKDYIALNEDLRSWTAADTAAQITQRKLEAAR
         120       130       140       150       160       170     

              190       200       210       220       230       240
pF1KB6 VAEQRRAYLEGTCVEWLHRYLENGKEMLQRADPPKTHVTHHPVFDYEATLRCWALGFYPA
       .::: ::::::::::::.:::::::: ::::.::::::::::. :.::::::::::::::
NP_002 AAEQLRAYLEGTCVEWLRRYLENGKETLQRAEPPKTHVTHHPLSDHEATLRCWALGFYPA
         180       190       200       210       220       230     

              250       260       270       280       290       300
pF1KB6 EIILTWQRDGEDQTQDVELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPLM
       :: :::::::::::::.::::::::::::::::::::::::.:::::::.::::: ::: 
NP_002 EITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHMQHEGLQEPLT
         240       250       260       270       280       290     

              310       320        330       340                   
pF1KB6 LRWKQSSLPTIPIMGIVAGLVVLAAV-VTGAAVAAVLWRKKSSD                
       : :. :: ::::::::::::.::... : ::.:.:.. :.:::                 
NP_002 LSWEPSSQPTIPIMGIVAGLAVLVVLAVLGAVVTAMMCRRKSSGGKGGSCSQAACSNSAQ
         300       310       320       330       340       350     

NP_002 GSDESLITCKA
         360      

>>NP_061823 (OMIM: 143110) HLA class I histocompatibilit  (346 aa)
 initn: 1841 init1: 1841 opt: 1841  Z-score: 2085.5  bits: 394.3 E(85289): 2e-109
Smith-Waterman score: 1841; 79.1% identity (91.9% similar) in 335 aa overlap (9-343:1-335)

               10        20        30        40        50        60
pF1KB6 MKTPRMVVMAPRTLFLLLSGALTLTETWAGSHSMRYFSAAVSRPGRGEPRFIAMGYVDDT
               ::::.:.:::::::.::.:::::::.::::.:::::::::::.::. :::::
NP_061         MAPRSLLLLLSGALALTDTWAGSHSLRYFSTAVSRPGRGEPRYIAVEYVDDT
                       10        20        30        40        50  

               70        80        90       100       110       120
pF1KB6 QFVRFDSDSACPRMEPRAPWVEQEGPEYWEEETRNTKAHAQTDRMNLQTLRGYYNQSEAS
       ::.:::::.: :::::: ::::::::.:::  :  .::.:::::. :..:   ::::::.
NP_061 QFLRFDSDAAIPRMEPREPWVEQEGPQYWEWTTGYAKANAQTDRVALRNLLRRYNQSEAG
             60        70        80        90       100       110  

              130       140       150       160       170       180
pF1KB6 SHTLQWMIGCDLGSDGRLLRGYEQYAYDGKDYLALNEDLRSWTAADTAAQISKRKCEAAN
       ::::: : :::.: ::::::::.:.:::::::..:::::::::::::.:::..:  :: .
NP_061 SHTLQGMNGCDMGPDGRLLRGYHQHAYDGKDYISLNEDLRSWTAADTVAQITQRFYEAEE
            120       130       140       150       160       170  

              190       200       210       220       230       240
pF1KB6 VAEQRRAYLEGTCVEWLHRYLENGKEMLQRADPPKTHVTHHPVFDYEATLRCWALGFYPA
        ::. :.:::: :.: :.:::::::: ::::::::.::.:::. :.::::::::::::::
NP_061 YAEEFRTYLEGECLELLRRYLENGKETLQRADPPKAHVAHHPISDHEATLRCWALGFYPA
            180       190       200       210       220       230  

              250       260       270       280       290       300
pF1KB6 EIILTWQRDGEDQTQDVELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPLM
       :: ::::::::.::::.:::::::::::::::::::::: ::::::::::::::::.::.
NP_061 EITLTWQRDGEEQTQDTELVETRPAGDGTFQKWAAVVVPPGEEQRYTCHVQHEGLPQPLI
            240       250       260       270       280       290  

              310       320       330       340              
pF1KB6 LRWKQSSLPTIPIMGIVAGLVVLAAVVTGAAVAAVLWRKKSSD           
       :::.::  :::::.:::::::::.::::::.::::.:::::::           
NP_061 LRWEQSPQPTIPIVGIVAGLVVLGAVVTGAVVAAVMWRKKSSDRNRGSYSQAAV
            300       310       320       330       340      




343 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 16:45:26 2016 done: Fri Nov  4 16:45:28 2016
 Total Scan time:  8.010 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]
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