FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6504, 382 aa
  1>>>pF1KB6504 382 - 382 aa - 382 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5334+/-0.00064; mu= 15.7074+/- 0.039
 mean_var=70.3711+/-14.297, 0's: 0 Z-trim(111.2): 15  B-trim: 8 in 1/52
 Lambda= 0.152889
 statistics sampled from 12182 (12190) to 12182 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.743), E-opt: 0.2 (0.374), width:  16
 Scan time:  2.810

The best scores are:                                      opt bits E(32554)
CCDS12672.1 QPCTL gene_id:54814|Hs108|chr19        ( 382) 2605 583.3 1.2e-166
CCDS54282.1 QPCTL gene_id:54814|Hs108|chr19        ( 288) 1192 271.5 6.5e-73
CCDS1790.1 QPCT gene_id:25797|Hs108|chr2           ( 361) 1081 247.1 1.8e-65


>>CCDS12672.1 QPCTL gene_id:54814|Hs108|chr19             (382 aa)
 initn: 2605 init1: 2605 opt: 2605  Z-score: 3105.1  bits: 583.3 E(32554): 1.2e-166
Smith-Waterman score: 2605; 100.0% identity (100.0% similar) in 382 aa overlap (1-382:1-382)

               10        20        30        40        50        60
pF1KB6 MRSGGRGRPRLRLGERGLMEPLLPPKRRLLPRVRLLPLLLALAVGSAFYTIWSGWHRRTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MRSGGRGRPRLRLGERGLMEPLLPPKRRLLPRVRLLPLLLALAVGSAFYTIWSGWHRRTE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 ELPLGRELRVPLIGSLPEARLRRVVGQLDPQRLWSTYLRPLLVVRTPGSPGNLQVRKFLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 ELPLGRELRVPLIGSLPEARLRRVVGQLDPQRLWSTYLRPLLVVRTPGSPGNLQVRKFLE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 ATLRSLTAGWHVELDPFTASTPLGPVDFGNVVATLDPRAARHLTLACHYDSKLFPPGSTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 ATLRSLTAGWHVELDPFTASTPLGPVDFGNVVATLDPRAARHLTLACHYDSKLFPPGSTP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 FVGATDSAVPCALLLELAQALDLELSRAKKQAAPVTLQLLFLDGEEALKEWGPKDSLYGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 FVGATDSAVPCALLLELAQALDLELSRAKKQAAPVTLQLLFLDGEEALKEWGPKDSLYGS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 RHLAQLMESIPHSPGPTRIQAIELFMLLDLLGAPNPTFYSHFPRTVRWFHRLRSIEKRLH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RHLAQLMESIPHSPGPTRIQAIELFMLLDLLGAPNPTFYSHFPRTVRWFHRLRSIEKRLH
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 RLNLLQSHPQEVMYFQPGEPFGSVEDDHIPFLRRGVPVLHLISTPFPAVWHTPADTEVNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RLNLLQSHPQEVMYFQPGEPFGSVEDDHIPFLRRGVPVLHLISTPFPAVWHTPADTEVNL
              310       320       330       340       350       360

              370       380  
pF1KB6 HPPTVHNLCRILAVFLAEYLGL
       ::::::::::::::::::::::
CCDS12 HPPTVHNLCRILAVFLAEYLGL
              370       380  

>>CCDS54282.1 QPCTL gene_id:54814|Hs108|chr19             (288 aa)
 initn: 1192 init1: 1192 opt: 1192  Z-score: 1422.5  bits: 271.5 E(32554): 6.5e-73
Smith-Waterman score: 1784; 75.4% identity (75.4% similar) in 382 aa overlap (1-382:1-288)

               10        20        30        40        50        60
pF1KB6 MRSGGRGRPRLRLGERGLMEPLLPPKRRLLPRVRLLPLLLALAVGSAFYTIWSGWHRRTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MRSGGRGRPRLRLGERGLMEPLLPPKRRLLPRVRLLPLLLALAVGSAFYTIWSGWHRRTE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 ELPLGRELRVPLIGSLPEARLRRVVGQLDPQRLWSTYLRPLLVVRTPGSPGNLQVRKFLE
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::   
CCDS54 ELPLGRELRVPLIGSLPEARLRRVVGQLDPQRLWSTYLRPLLVVRTPGSPGNLQVRK---
               70        80        90       100       110          

              130       140       150       160       170       180
pF1KB6 ATLRSLTAGWHVELDPFTASTPLGPVDFGNVVATLDPRAARHLTLACHYDSKLFPPGSTP
                                                                   
CCDS54 ------------------------------------------------------------
                                                                   

              190       200       210       220       230       240
pF1KB6 FVGATDSAVPCALLLELAQALDLELSRAKKQAAPVTLQLLFLDGEEALKEWGPKDSLYGS
                                      :::::::::::::::::::::::::::::
CCDS54 -------------------------------AAPVTLQLLFLDGEEALKEWGPKDSLYGS
                                      120       130       140      

              250       260       270       280       290       300
pF1KB6 RHLAQLMESIPHSPGPTRIQAIELFMLLDLLGAPNPTFYSHFPRTVRWFHRLRSIEKRLH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 RHLAQLMESIPHSPGPTRIQAIELFMLLDLLGAPNPTFYSHFPRTVRWFHRLRSIEKRLH
        150       160       170       180       190       200      

              310       320       330       340       350       360
pF1KB6 RLNLLQSHPQEVMYFQPGEPFGSVEDDHIPFLRRGVPVLHLISTPFPAVWHTPADTEVNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 RLNLLQSHPQEVMYFQPGEPFGSVEDDHIPFLRRGVPVLHLISTPFPAVWHTPADTEVNL
        210       220       230       240       250       260      

              370       380  
pF1KB6 HPPTVHNLCRILAVFLAEYLGL
       ::::::::::::::::::::::
CCDS54 HPPTVHNLCRILAVFLAEYLGL
        270       280        

>>CCDS1790.1 QPCT gene_id:25797|Hs108|chr2                (361 aa)
 initn: 1064 init1: 473 opt: 1081  Z-score: 1288.7  bits: 247.1 E(32554): 1.8e-65
Smith-Waterman score: 1081; 47.8% identity (71.4% similar) in 364 aa overlap (27-382:7-361)

               10        20        30        40         50         
pF1KB6 MRSGGRGRPRLRLGERGLMEPLLPPKRRLLPRVRLLPLLLALAVGS-AFYTIWSGWHRRT
                                 ::..  ..:: :. ::  .: .     :.:    
CCDS17                     MAGGRHRRVVGTLHLLLLVAALPWASRGVSPSASAW----
                                   10        20        30          

      60        70        80        90       100       110         
pF1KB6 EELPLGRELRVPLIGSLPEARLRRVVGQLDPQRLWSTYLRPLLVVRTPGSPGNLQVRKFL
          :  .. . : :  :  . ::...   . ...:.. :.:::. : :::::.  .:. .
CCDS17 ---PEEKNYHQPAI--LNSSALRQIAEGTSISEMWQNDLQPLLIERYPGSPGSYAARQHI
            40          50        60        70        80        90 

     120       130       140       150       160       170         
pF1KB6 EATLRSLTAGWHVELDPFTASTPLGPVDFGNVVATLDPRAARHLTLACHYDSKLFPP-GS
          .. : : : .:.: : ..:: :  .:.:...::.: : :::.:::::::: :   ..
CCDS17 MQRIQRLQADWVLEIDTFLSQTPYGYRSFSNIISTLNPTAKRHLVLACHYDSKYFSHWNN
             100       110       120       130       140       150 

      180       190       200          210       220       230     
pF1KB6 TPFVGATDSAVPCALLLELAQALD---LELSRAKKQAAPVTLQLLFLDGEEALKEWGPKD
         ::::::::::::..::::.:::   : :. .. .   ..:::.:.:::::. .:.:.:
CCDS17 RVFVGATDSAVPCAMMLELARALDKKLLSLKTVSDSKPDLSLQLIFFDGEEAFLHWSPQD
             160       170       180       190       200       210 

         240       250          260       270       280       290  
pF1KB6 SLYGSRHLAQLMESIPHSPGP---TRIQAIELFMLLDLLGAPNPTFYSHFPRTVRWFHRL
       :::::::::  : : :: ::    .......:..::::.::::::: . :: ..:::.::
CCDS17 SLYGSRHLAAKMASTPHPPGARGTSQLHGMDLLVLLDLIGAPNPTFPNFFPNSARWFERL
             220       230       240       250       260       270 

            300       310       320       330       340       350  
pF1KB6 RSIEKRLHRLNLLQSHPQEVMYFQPGEPFGSVEDDHIPFLRRGVPVLHLISTPFPAVWHT
       ..::..::.:.::..:  :  :::     : ..::::::::::::::::: .::: ::::
CCDS17 QAIEHELHELGLLKDHSLEGRYFQNYSYGGVIQDDHIPFLRRGVPVLHLIPSPFPEVWHT
             280       290       300       310       320       330 

            360       370       380  
pF1KB6 PADTEVNLHPPTVHNLCRILAVFLAEYLGL
         :.: ::   :. :: .:: ::. ::: :
CCDS17 MDDNEENLDESTIDNLNKILQVFVLEYLHL
             340       350       360 




382 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 17:10:09 2016 done: Fri Nov  4 17:10:10 2016
 Total Scan time:  2.810 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]