GENSCAN 1.0	Date run:  5-Nov-116	Time: 20:38:32

Sequence gi568815582f:23736176_24314813 : 578638 bp : 43.67% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +  18875  18941   67  1  1   93   68    87 0.991   8.47
 1.02 Intr +  19486  19558   73  2  1  104   78   110 0.999  10.06
 1.03 Intr +  19672  19752   81  1  0   74   68    88 0.947   4.15
 1.04 Intr +  19888  20018  131  1  2  107   74    80 0.666   8.84
 1.05 Intr +  20213  20274   62  0  2  103   52    71 0.974   3.45
 1.06 Intr +  21026  21148  123  1  0   99   77   182 0.981  18.98
 1.07 Term +  21355  21408   54  0  0   86   41   104 0.936   3.06
 1.08 PlyA +  21497  21502    6                               1.05

 2.00 Prom +  30831  30870   40                              -3.56
 2.01 Init +  33461  33578  118  1  1   31    0   180 0.108   3.86
 2.02 Intr +  50723  50823  101  0  2   62   84    57 0.134   2.53
 2.03 Intr +  53449  53484   36  0  0   86  113    15 0.161   2.26
 2.04 Intr +  70948  71017   70  0  1  114   81    55 0.192   6.15
 2.05 Intr +  99942 100173  232  1  1   88   93   299 0.127  27.23
 2.06 Intr + 101200 101231   32  1  2  129  102    36 0.978   6.87
 2.07 Term + 121875 121951   77  1  2  -29   34   187 0.036  -0.40
 2.08 PlyA + 122795 122800    6                               1.05

 3.00 Prom + 133524 133563   40                              -2.36
 3.01 Init + 146934 146972   39  2  0   78  115    46 0.527   6.48
 3.02 Intr + 187135 187158   24  0  0   83  100    15 0.206   0.42
 3.03 Intr + 189164 189282  119  1  2  117   58    88 0.066   7.96
 3.04 Term + 206268 206337   70  0  1   92   43    91 0.099   2.41
 3.05 PlyA + 206854 206859    6                               1.05

 4.00 Prom + 207415 207454   40                              -6.96
 4.01 Init + 210210 210282   73  2  1   17  110    56 0.273   1.93
 4.02 Intr + 211813 211850   38  2  2   92  109    10 0.242   1.48
 4.03 Intr + 214685 214730   46  1  1   92   62    31 0.222  -1.12
 4.04 Intr + 216633 216742  110  1  2   70   64    93 0.156   5.10
 4.05 Intr + 223872 223903   32  2  2   73   78    42 0.003  -1.37
 4.06 Intr + 229615 229751  137  1  2  107   15    68 0.004   1.61
 4.07 Intr + 231045 231068   24  1  0  103   73    29 0.003   0.90
 4.08 Intr + 252333 252415   83  1  2  116   95    33 0.754   6.16
 4.09 Intr + 257454 257569  116  2  2   97  100    73 0.988   8.65
 4.10 Intr + 258233 258377  145  2  1   38   57   150 0.860   7.18
 4.11 Intr + 261156 261243   88  2  1   -3  110    49 0.039  -2.46
 4.12 Term + 279103 279215  113  2  2  122   39    60 0.263   3.22
 4.13 PlyA + 280361 280366    6                               1.05

 5.00 Prom + 283426 283465   40                              -3.36
 5.01 Init + 295825 295872   48  0  0   82   97    18 0.496   3.05
 5.02 Intr + 295961 296072  112  1  1   90   98    97 0.988  10.85
 5.03 Intr + 299244 299372  129  1  0  111   86   230 0.999  25.77
 5.04 Intr + 302882 302959   78  0  0   19   81   104 0.417   2.32
 5.05 Term + 313015 313460  446  2  2   36   48   176 0.337   3.80
 5.06 PlyA + 315548 315553    6                               1.05

 6.03 PlyA - 315948 315943    6                               1.05
 6.02 Term - 319474 319155  320  2  2   28   45   198 0.375   4.54
 6.01 Init - 320618 320534   85  2  1   90   58    17 0.255  -0.12
 6.00 Prom - 327461 327422   40                              -3.16

 7.00 Prom + 329737 329776   40                              -5.36
 7.01 Init + 348813 348831   19  2  1   46  116     3 0.277  -0.84
 7.02 Intr + 356616 356772  157  1  1   93   87   176 0.795  17.07
 7.03 Intr + 357988 358122  135  1  0   95  119    66 0.988  10.08
 7.04 Intr + 376798 376894   97  1  1  118   78   125 0.995  14.51
 7.05 Intr + 387660 387806  147  2  0   93   86   150 0.636  15.73
 7.06 Intr + 418509 418682  174  2  0  128   48   220 0.834  22.14
 7.07 Term + 420669 420728   60  2  0   94   48    40 0.701  -1.60
 7.08 PlyA + 423814 423819    6                               1.05

 8.00 Prom + 427489 427528   40                              -4.46
 8.01 Init + 428311 428371   61  0  1   60  101    77 0.979   7.61
 8.02 Intr + 430307 430331   25  0  1  103  111    17 0.831   2.58
 8.03 Intr + 433220 433383  164  2  2   59  107    18 0.310   0.42
 8.04 Intr + 436021 436186  166  2  1   23   75   185 0.418   9.72
 8.05 Intr + 438343 438405   63  1  0   90  131    49 0.991   7.23
 8.06 Intr + 444615 444753  139  0  1   77   78   150 0.984  13.37
 8.07 Intr + 448936 449016   81  0  0  107   91    74 0.998   9.43
 8.08 Intr + 449285 449392  108  1  0   83   98   163 0.999  17.28
 8.09 Intr + 454915 455055  141  0  0   56   87   144 0.944  11.65
 8.10 Term + 483786 483938  153  2  0   65   43   193 0.924  10.42
 8.11 PlyA + 485753 485758    6                               1.05

 9.00 Prom + 485914 485953   40                              -2.36
 9.01 Init + 495916 495922    7  0  1   62  119     7 0.558   1.88
 9.02 Term + 499758 499843   86  1  2   91   45    68 0.596   0.62
 9.03 PlyA + 500823 500828    6                               1.05

10.05 PlyA - 501100 501095    6                               1.05
10.04 Term - 513870 513773   98  1  2   49   43    91 0.686  -1.17
10.03 Intr - 514244 514098  147  0  0  -20   14   500 0.229  32.01
10.02 Intr - 517619 517482  138  0  0   60   87   100 0.806   7.54
10.01 Init - 517685 517673   13  2  1   69  113     5 0.765   1.67
10.00 Prom - 533879 533840   40                              -3.36

11.00 Prom + 538138 538177   40                               0.14
11.01 Init + 549457 549459    3  0  0  108   81     0 0.197   1.30
11.02 Term + 557124 557258  135  2  0   84   41    99 0.402   2.82
11.03 PlyA + 559277 559282    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init + 100001 100173  173  1  2   92   93   292 0.866  29.01
S.002 Init - 228893 228819   75  2  0   65  107    67 0.823   7.39


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815582f:23736176_24314813|GENSCAN_predicted_peptide_1|196_aa
MGSRSSHAAVIPDGDSIRRETGFSQASLLRLHHRFRALDRNKKGYLSRMDLQQIGALAVN
PLGDRIIESFFPDGSQRVDFPGFVRVLAHFRPVEDEDTETQDPKKPEPLNSRRNKLHYAF
QLYDLDRDGKISRHEMLQVLRLMVGVQVTEEQLENIADRTVQEADEDGDGAVSFVEFTKS
LEKMDVEQKMSIRILK

>gi568815582f:23736176_24314813|GENSCAN_predicted_CDS_1|591_bp
atggggtcgcgcagctcccacgccgcggtcattcccgacggggacagtattcggcgagag
accggcttctcccaagccagcctgctccgcctgcaccaccggttccgggcactggacagg
aataagaagggctacctgagccgcatggatctccagcagataggggcgctcgccgtgaac
cccctgggagaccgaattatagaaagcttcttccccgatgggagccagcgagtggatttc
ccaggctttgtcagggtcttggctcattttcgccctgtagaagatgaggacacagaaacc
caagaccccaagaaacctgaacctctcaacagcagaaggaacaaacttcactatgcattt
cagctctatgacctggatcgcgatgggaagatctccaggcatgagatgctgcaggttctc
cgtctgatggttggggtacaggtgacagaagagcagctggagaacatcgctgaccgcacg
gtgcaggaggctgatgaagatggggatggggctgtgtccttcgtggagttcaccaagtcc
ttagagaagatggacgttgagcaaaaaatgagcatccggatcctgaagtga

>gi568815582f:23736176_24314813|GENSCAN_predicted_peptide_2|221_aa
MQRPTGTYKDNVEPESVATSNLDDVSDWQEEPVPMTGTWCGYRNCTFFYPISSPPSLKFK
VSKRTVFDDTGKRDHGGINLTGFKKMVKEVSRGTVALGQILANQVEQAARGPAAPGPAPL
GLRLPARKMADPAAGPPPSEGEESTVRFARKGALRQKNVHEVKNHKFTARFFKQPTFCSH
CTDFIWGFGKQGFQCQGLCNFRIDGDNDVDDEDDDDDDEGS

>gi568815582f:23736176_24314813|GENSCAN_predicted_CDS_2|666_bp
atgcaaagaccaacaggaacctacaaggacaacgtggaacctgagtctgttgccacctcc
aatcttgatgatgtgagtgactggcaggaggagccagtgcccatgacaggcacctggtgt
ggttatagaaactgcaccttcttctatccaatttcaagcccaccatctcttaaatttaag
gtctccaaaagaacagtttttgatgacactgggaagagggatcatggtggtattaacctc
acagggtttaagaagatggtaaaggaagtatctagaggaactgttgccttgggccaaatt
ctggccaaccaggtggaacaagctgcccgcggtcccgcggccccggggccggcacctctc
gggctccggctccccgcgcgcaagatggctgacccggctgcggggccgccgccgagcgag
ggcgaggagagcaccgtgcgcttcgcccgcaaaggcgccctccggcagaagaacgtgcat
gaggtcaagaaccacaaattcaccgcccgcttcttcaagcagcccaccttctgcagccac
tgcaccgacttcatctggggcttcgggaagcagggattccagtgccaaggattgtgtaac
ttcagaattgatggtgacaatgacgttgatgatgaggatgatgatgatgatgatgaaggc
agctaa

>gi568815582f:23736176_24314813|GENSCAN_predicted_peptide_3|83_aa
MELIFSKKPDNTQMEETPLIKDLPIGALSDLTGHWVSVAMIITLFLDVTLLSLTRMPVFL
RHVSLELGALEFEKWLDEGIEKH

>gi568815582f:23736176_24314813|GENSCAN_predicted_CDS_3|252_bp
atggagctgatattcagcaagaagccagacaatacacagatggaagagactcccctcatc
aaggacttgcccattggggctctttcagacctgactggtcattgggtatctgtggccatg
ataatcactctcttcctggacgtgaccctcctctcgttaaccaggatgcctgtgttctta
agacatgtgagcctggagcttggagcattggagtttgagaaatggcttgatgagggcatt
gagaagcactag

>gi568815582f:23736176_24314813|GENSCAN_predicted_peptide_4|334_aa
MTDAGTLLSSIISVVSYQVDLAVKARAQTCDLGSVNQGKVAVCEGVECLSIPGYCHGNAL
YTNLDDGGKLAQELWECLDTMPPELAGLGACQAVEAQEESLTFVQLLLLFFTNCQLQLLC
GTLGLEASFLVLWHHKALPQCHLSPKQMTLPPGICCFVVHKRCHEFVTFSCPGADKGPAS
DTKPYYGNHSHLIGKLKCNGNNWVLEYQGPFGGTQLLKARVRPTMMGEAKRKPLELPQPR
KTANQEQYYILRGTAEISAIINDLKDAEINEKLQQLNTGKTMNGPDPLRMKVWVTLPGEK
IKAYITQVACSRLHDWKLPELVLNLHIPAIESDP

>gi568815582f:23736176_24314813|GENSCAN_predicted_CDS_4|1005_bp
atgacagatgccggtaccttgctgtcatccatcatatcagttgtcagttaccaggtagac
ctagcggtaaaggctagagcacagacatgtgacctaggatctgtcaatcagggcaaggtt
gctgtctgtgaaggagtggaatgcctgagcatccctggttattgccatggaaatgcactg
tacacgaatctggatgatggagggaagctggctcaggagctatgggagtgtttggatacc
atgccgcctgaattggcaggtttaggagcatgtcaggctgtggaagcacaggaggagagc
ctgacttttgttcagctcctgcttctcttcttcaccaactgccagcttcagctgctttgt
ggcaccctggggcttgaagcttcatttctggtgctgtggcaccacaaagctctgccccag
tgtcacttgagtccaaagcagatgacgctgccaccaggcatttgctgctttgtggtgcac
aagcggtgccatgaatttgtcacattctcctgccctggcgctgacaagggtccagcctcc
gataccaaaccttactatgggaaccacagccacttaattggaaaacttaaatgcaatggg
aataattgggtcctggagtatcaggggccatttggtggcactcaactgttaaaggcaaga
gtgaggcccactatgatgggtgaagccaagaggaagccattagaactgccccagcctagg
aaaacagccaaccaagagcaatactacatccttagagggacagcagagatcagtgccatc
atcaatgacttgaaagatgcagagatcaatgaaaaactacaacaactcaatacaggcaaa
actatgaatggcccagaccctttaagaatgaaggtttgggtcaccctgccaggtgagaaa
atcaaggcttatataactcaagtagcttgctcgaggctgcacgactggaaattaccagag
ctggtgttgaatttgcacattccagctatagaatctgacccctga

>gi568815582f:23736176_24314813|GENSCAN_predicted_peptide_5|270_aa
MVPTGTMTSGDQVQFLDPRSKHKFKIHTYSSPTFCDHCGSLLYGLIHQGMKCDTCMMNVH
KRCVMNVPSLCGTDHTERRGRIYIQAHIDRDVLIVLEEEEREIILSPPKEGYSKKVAVCK
PGRPGNGLCESGNPVPPWTCTLYHYPGTSGTCTLYHYPGTSGTCTLNHYPGTSGTCTLTT
TLAHPGPAPLTTTLAHPGPATLTTNLAHPGPAPLTTNLAQPGHVPLTITLAQPGHAPLTT
TLAHLGHARLTTTLASSGTCTLNYYPGLPP

>gi568815582f:23736176_24314813|GENSCAN_predicted_CDS_5|813_bp
atggtcccaacaggtacaatgacctctggggaccaagttcagttcttggacccccgcagc
aaacacaagtttaagatccacacgtactccagccccacgttttgtgaccactgtgggtca
ctgctgtatggactcatccaccaggggatgaaatgtgacacctgcatgatgaatgtgcac
aagcgctgcgtgatgaatgttcccagcctgtgtggcacggaccacacggagcgccgcggc
cgcatctacatccaggcccacatcgacagggacgtcctcattgtcctcgaggaagaagaa
agagagatcattctgtctccaccaaaggaaggatacagcaagaaggtggccgtctgcaag
ccaggaagaccagggaatgggttatgtgaatctggcaaccctgtcccaccctggacctgc
accctttaccactaccctggcacatccgggacctgcaccctttaccactaccctggcaca
tccgggacctgcacccttaaccactaccctggcacatccgggacctgcaccttaaccact
accctggcacacccgggacctgcacccttaaccactaccctggcacatccaggacctgca
accttaaccactaacctggcacatccaggacctgcaccgttaaccactaacctggcacaa
ccaggacatgtgcccttaactattaccctggcacaaccgggacatgcacccttaaccact
accctggcacatctgggacatgcacgcttaaccactactctagcatcatccgggacctgc
acccttaactactaccctggtctgcctccttga

>gi568815582f:23736176_24314813|GENSCAN_predicted_peptide_6|134_aa
MVLASTSGEGLRKLPIMVQGERGARVSHACLGRDFSNNGLRQWIRLERRNEIKGALILDG
GNRLSALIPSPCEATFSELKQASSKGQRSRRESPNPAIRGCRMQLVRGGGTDNSSQFQGH
LPSFPSASQNPAGS

>gi568815582f:23736176_24314813|GENSCAN_predicted_CDS_6|405_bp
atggtgctggcatccacttctggtgagggactcaggaagcttccaatcatggtacaagga
gaaaggggagcccgtgtatcacatgcctgcttaggtcgggatttctccaacaacgggcta
agacagtggattcgtctggaaagaagaaatgaaatcaaaggagcattgatcctcgatggg
gggaacaggctctcagctcttattccaagtccctgtgaagccacattctctgagctgaag
caggcatccagcaagggccagagaagccgacgtgaaagcccaaacccagccatccgtggc
tgccgcatgcagctcgtcaggggaggaggaacagacaatagcagtcagttccagggccat
ctcccttccttccctagtgcttctcagaacccagcaggcagctga

>gi568815582f:23736176_24314813|GENSCAN_predicted_peptide_7|262_aa
MLKRQEVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQ
LKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKASVDGWFKLLSQEEGEYFNVPV
PPEGSEANEELRQKFERAKISQGTKVPEEKTTNTVSKFDNNGNRDRMKLTDFNFLMVLGK
GSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCF
QTMMDSLTSSGKGQSPSSKSTK

>gi568815582f:23736176_24314813|GENSCAN_predicted_CDS_7|789_bp
atgttgaagagacaggaagtaagagatgctaaaaaccttgtacctatggaccccaatggc
ctgtcagatccctacgtaaaactgaaactgattcccgatcccaaaagtgagagcaaacag
aagaccaaaaccatcaaatgctccctcaaccctgagtggaatgagacatttagatttcag
ctgaaagaatcggacaaagacagaagactgtcagtagagatttgggattgggatttgacc
agcaggaatgacttcatgggatctttgtcctttgggatttctgaacttcagaaagccagt
gttgatggctggtttaagttactgagccaggaggaaggcgagtacttcaatgtgcctgtg
ccaccagaaggaagtgaggccaatgaagaactgcggcagaaatttgagagggccaagatc
agtcagggaaccaaggtcccggaagaaaagacgaccaacactgtctccaaatttgacaac
aatggcaacagagaccggatgaaactgaccgattttaacttcctaatggtgctggggaaa
ggcagctttggcaaggtcatgctttcagaacgaaaaggcacagatgagctctatgctgtg
aagatcctgaagaaggacgttgtgatccaagatgatgacgtggagtgcactatggtggag
aagcgggtgttggccctgcctgggaagccgcccttcctgacccagctccactcctgcttc
cagaccatgatggattcattgacatcatcaggcaaaggacagtctccgtccagtaaatca
actaagtaa

>gi568815582f:23736176_24314813|GENSCAN_predicted_peptide_8|366_aa
MTILKKPFKVKQTSQFEEKDAIIAIKSGTVRPRTFVLAYVTLHDASLSTTLGSSPTLSPF
FFLLQAHEVCSSLRAFAQPVSPPALPPLSIWSPRSYGMLMLLFAVLFQDRLYFVMEYVNG
GDLMYHIQQVGRFKEPHAVFYAAEIAIGLFFLQSKGIIYRDLKLDNVMLDSEGHIKIADF
GMCKENIWDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGED
EDELFQSIMEHNVAYPKSMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKEHAFFRYIDW
EKLERKEIQPPYKPKARDKRDTSNFDKEFTRQPVELTPTDKLFIMNLDQNEFAGFSYTNP
EFVINV

>gi568815582f:23736176_24314813|GENSCAN_predicted_CDS_8|1101_bp
atgacaattttgaagaagccctttaaagtcaagcagactagccagtttgaagagaaagat
gcaataatagccatcaaatcaggaacagtgagaccccgaacctttgtgttagcctacgtg
accttacatgatgcgtccctcagcaccaccctgggctcatctcctaccctgtcccccttc
ttctttcttctccaagcacatgaggtgtgctctagcctcagggccttcgcacagcctgtt
tctccgcctgctcttcccccactgtccatttggagccccagaagctacgggatgctaatg
ttgctgtttgctgtcctcttccaggaccgcctgtactttgtgatggagtacgtgaatggg
ggcgacctcatgtatcacatccagcaagtcggccggttcaaggagccccatgctgtattt
tacgctgcagaaattgccatcggtctgttcttcttacagagtaagggcatcatttaccgt
gacctaaaacttgacaacgtgatgctcgattctgagggacacatcaagattgccgatttt
ggcatgtgtaaggaaaacatctgggatggggtgacaaccaagacattctgtggcactcca
gactacatcgcccccgagataattgcttatcagccctatgggaagtccgtggattggtgg
gcatttggagtcctgctgtatgaaatgttggctgggcaggcaccctttgaaggggaggat
gaagatgaactcttccaatccatcatggaacacaacgtagcctatcccaagtctatgtcc
aaggaagctgtggccatctgcaaagggctgatgaccaaacacccaggcaaacgtctgggt
tgtggacctgaaggcgaacgtgatatcaaagagcatgcatttttccggtatattgattgg
gagaaacttgaacgcaaagagatccagcccccttataagccaaaagctagagacaagaga
gacacctccaacttcgacaaagagttcaccagacagcctgtggaactgacccccactgat
aaactcttcatcatgaacttggaccaaaatgaatttgctggcttctcttatactaaccca
gagtttgtcattaatgtgtag

>gi568815582f:23736176_24314813|GENSCAN_predicted_peptide_9|30_aa
MAVYAFKQLFWGESVGAHTGRSESLATCLL

>gi568815582f:23736176_24314813|GENSCAN_predicted_CDS_9|93_bp
atggctgtctatgccttcaagcagcttttctggggagagagtgttggcgcccacactggc
agatctgagtccctggccacgtgcctgctgtga

>gi568815582f:23736176_24314813|GENSCAN_predicted_peptide_10|131_aa
MLMKDPQWNSSIFISTHLALQQKRRQAEYGAQEPSRRIVGGKGSGAQVDEEEEEEEEEEE
KEEEKEEEGEEEEEEEEEEEEEEEEEEEEEEEEEEDVVVESSDDQAKTTTSSLGFISILY
GCQTIVCIRVA

>gi568815582f:23736176_24314813|GENSCAN_predicted_CDS_10|396_bp
atgttgatgaaagacccacagtggaacagcagcatcttcatctccacccacttagctcta
caacagaagcgcagacaagcagagtatggtgcccaggagcctagcagaaggatagttggg
ggaaaaggatcaggagctcaggtagatgaagaagaagaggaggaggaggaggaggaggag
aaggaggaggaaaaagaagaagaaggagaagaagaggaagaagaagaagaagaagaagaa
gaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagatgttgttgttgag
tcttccgatgatcaggccaagactaccacatcctcgttgggcttcatctccatcctctat
ggttgccaaaccatagtgtgcattagagtcgcttag

>gi568815582f:23736176_24314813|GENSCAN_predicted_peptide_11|45_aa
MKERMGLDDLNGPPTLMFILWFSLALPLYLTANEEHRLGSHTAYI

>gi568815582f:23736176_24314813|GENSCAN_predicted_CDS_11|138_bp
atgaaggagaggatgggtctagatgacctcaatggtcctccaactctgatgttcatcctc
tggttctctttagccttgcccctctacttgacagccaatgaagagcacagacttgggagc
cacactgcctacatttga