GENSCAN 1.0	Date run:  4-Nov-116	Time: 20:40:19

Sequence gi568815590f:60417208_60720766 : 303559 bp : 40.84% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.02 PlyA -    619    614    6                               1.05
 1.01 Sngl -   5123   3966 1158  2  0   51   55   820 0.737  70.95
 1.00 Prom -   8561   8522   40                              -6.25

 2.00 Prom +   8828   8867   40                              -7.65
 2.01 Init +  16744  16833   90  0  0   60   85   133 0.994  10.74
 2.02 Term +  20158  20319  162  0  0  125   45    59 0.963   2.25
 2.03 PlyA +  20346  20351    6                               1.05

 3.02 PlyA -  20399  20394    6                               1.05
 3.01 Sngl -  26876  26574  303  2  0   78   54   222 0.807  13.38
 3.00 Prom -  55312  55273   40                              -4.15

 4.00 Prom +  55826  55865   40                              -5.65
 4.01 Init +  62595  62696  102  2  0   51   43   123 0.257   3.84
 4.02 Term +  73605  73856  252  2  0   60   48   198 0.324   7.65
 4.03 PlyA +  75141  75146    6                               1.05

 5.00 Prom +  76459  76498   40                              -4.85
 5.01 Init +  77164  77326  163  0  1   93   62   127 0.798  10.54
 5.02 Term +  77352  77491  140  1  2  -15   54   175 0.777   0.94
 5.03 PlyA +  78025  78030    6                               1.05

 6.00 Prom +  79813  79852   40                              -8.45
 6.01 Sngl +  80134  80526  393  0  0   59   55   282 0.944  17.99
 6.02 PlyA +  80559  80564    6                               1.05

 7.00 Prom +  81252  81291   40                              -2.85
 7.01 Init +  82174  82237   64  0  1   58   29    85 0.081   0.96
 7.02 Intr +  99854 100046  193  0  1   77   94   255 0.785  22.63
 7.03 Term + 100184 100334  151  2  1   96   43    81 0.841   0.80
 7.04 PlyA + 100997 101002    6                               1.05

 8.00 Prom + 104164 104203   40                              -6.15
 8.01 Init + 129885 130005  121  2  1   68   74    91 0.618   6.10
 8.02 Intr + 141645 141716   72  1  0  114  111    16 0.696   4.96
 8.03 Intr + 154839 154906   68  1  2   76  127    72 0.860   7.61
 8.04 Intr + 167001 167083   83  2  2  100   93    -1 0.532  -0.88
 8.05 Intr + 174651 174762  112  0  1   88   84   151 0.989  14.16
 8.06 Intr + 201373 201441   69  0  0   93   61    53 0.016   1.56
 8.07 Term + 203467 203562   96  0  0  101   47    66 0.033   0.79
 8.08 PlyA + 203709 203714    6                               1.05

 9.03 PlyA - 204499 204494    6                               1.05
 9.02 Term - 214372 213947  426  1  0  -32   39   269 0.447   4.32
 9.01 Init - 215934 215854   81  0  0   69   97    40 0.240   4.03
 9.00 Prom - 217054 217015   40                              -5.15

10.00 Prom + 218209 218248   40                              -3.45
10.01 Init + 225136 225169   34  0  1   68   58    59 0.010  -1.02
10.02 Intr + 228163 228307  145  2  1   37   42   121 0.265   0.82
10.03 Intr + 231305 231436  132  2  0  117   75   152 0.981  15.64
10.04 Intr + 234825 235046  222  0  0   39   14   273 0.726  11.32
10.05 Term + 239641 239770  130  1  1   78   35   200 0.895  10.37
10.06 PlyA + 240428 240433    6                               1.05

11.02 PlyA - 241711 241706    6                               1.05
11.01 Sngl - 243762 243562  201  0  0   62   48   195 0.153   7.83
11.00 Prom - 243860 243821   40                              -4.75

12.00 Prom + 245095 245134   40                              -6.85
12.01 Init + 255251 255360  110  1  2   72   75    69 0.515   3.74
12.02 Intr + 256076 256247  172  2  1   87   69    79 0.939   4.92
12.03 Intr + 258851 258894   44  1  2  101   62    55 0.757   0.32
12.04 Intr + 261539 261875  337  2  1   -5  105   366 0.995  23.60
12.05 Term + 279234 279326   93  2  0   58   38   104 0.015  -0.75
12.06 PlyA + 280148 280153    6                               1.05

13.04 PlyA - 280361 280356    6                               1.05
13.03 Term - 297627 297570   58  2  1   84   51    90 0.094   1.08
13.02 Intr - 302514 302442   73  1  1  106   61    67 0.254   3.35
13.01 Init - 303357 303246  112  0  1   85   70    91 0.660   7.42

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init +  36346  36421   76  0  1   83   89    34 0.827   4.30
S.002 Sngl + 296950 297177  228  0  0   82   48   216 0.832   9.90


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815590f:60417208_60720766|GENSCAN_predicted_peptide_1|385_aa
MDSQVWRNSQPLYTLIKKTQKANTHLVEWTPEAEAAFQALKKSLTQAPVLSLPVGQDFSL
YVTEKTGIALGVLTQVLGTSLQPVAYLSKEIDVVAKSWPHCLWVVAAVAVLVSEAIKIIQ
GRDLIVWTSHDVNGILTAKGDLWLSDNHLLKYQALLLEGPVLRLHTCATLNPVTFLPDNE
EKTERNCQQVIAQTYATRGDLLEVPLTDPYLNLYTDGSSFVEKGLRKAEYAVVSDNGILE
SNPLTPGTSAQLAELIALTQALELGEGKRVNIYTDSKYAYLVLHAQAAIWREREFLTSEG
TPIKHQEAIRRLLLAVQKPKEVAVLHCQGHEKGKEREIGGNRQADIEAKRAARRDPPLEM
LIEGPLVWGNPLQETKSQYSAEEIE

>gi568815590f:60417208_60720766|GENSCAN_predicted_CDS_1|1158_bp
atggattcccaggtatggcgaaatagccagccattatacacactaattaagaaaactcag
aaagccaatactcatttagtagaatggacacctgaagcagaagcggctttccaggcccta
aagaagagcctaacccaagccccagtgttaagcttgccagtggggcaagacttttcttta
tatgtcacagaaaaaacaggaatagctctaggagtccttacacaggtcctagggaccagc
ttgcaacctgtggcatatctgagtaaggaaattgatgtagtggcaaagagttggcctcat
tgtttatgggtagtggcagcagtagcagtcttagtatctgaagccattaaaataatacag
ggaagagatcttatcgtgtggacatctcatgatgtgaacggcatactcactgctaaagga
gacttgtggctgtcagacaaccatttacttaaatatcaggctctattacttgaaggacca
gtgctgcgactgcacacctgtgcaactcttaacccagtcacatttcttccagacaatgaa
gaaaagacagaacgtaactgtcaacaagtaattgctcaaacctacgctactcgaggggac
cttctagaggttcccttgactgatccctacctcaacttgtatactgatggaagttccttt
gtagaaaaaggacttcgaaaggcagagtatgcagtggtgagtgacaatggaatacttgaa
agtaatcccctcactccaggaaccagtgctcagctggcagaactaatagccctcactcag
gcactagaattaggagaaggaaaaagggtaaatatatatacagactctaagtatgcttac
ctagtcctccatgcccaagcagcaatatggagagaaagggaattcctaacttccgaggga
acacctatcaaacatcaggaagccattaggagattactattagctgtacagaaacctaaa
gaggtggcagtcttacactgccagggtcatgagaaaggaaaggaaagggaaataggaggg
aaccgccaagcagatattgaagccaaaagagccgcaaggcgggaccctccattagaaatg
cttatagaaggacccctagtatggggtaaccccctccaggaaaccaagtcccagtattca
gcagaagaaatagaatga

>gi568815590f:60417208_60720766|GENSCAN_predicted_peptide_2|83_aa
MGDWGLFHPYSFDHKRRLPPEAAILGAYPQEYLIDDIVYFLTNLSKGHIISDCPIIKAVK
VDQSDSSLIKCPIDCMHESVSTH

>gi568815590f:60417208_60720766|GENSCAN_predicted_CDS_2|252_bp
atgggagactggggcttatttcatccctacagcttcgaccataaaagacggctgccccct
gaagcggccattttaggggcctaccctcaggagtacttaatagatgatattgtgtacttc
ctaactaatctcagcaaagggcatataatatctgattgtcccattattaaagcagtaaag
gttgatcagtctgattcatcccttataaagtgtccaatcgactgtatgcatgagagtgtt
agtacccattga

>gi568815590f:60417208_60720766|GENSCAN_predicted_peptide_3|100_aa
MGRNQSRKAENSKNQSASSPPKDLSSSPATIQSWMENDFGELTEVSFRRSVITNFSELKK
DVRTHCKEAKNLEKRLDKWQTRINHVEKTLNDLMELKTMA

>gi568815590f:60417208_60720766|GENSCAN_predicted_CDS_3|303_bp
atggggagaaaccagagcagaaaagctgaaaattctaaaaaccagagtgcctcttctcct
ccaaaggatctcagctcctcgccagcaacgatacaaagctggatggagaatgactttggc
gagttgacagaagtaagcttcagaaggtcagtaataacaaacttctccgagctaaagaag
gatgttcgaacccattgcaaggaagccaaaaaccttgaaaaaagattagacaaatggcaa
actagaataaaccatgtagagaagaccttaaatgacctgatggagctgaaaaccatggca
tga

>gi568815590f:60417208_60720766|GENSCAN_predicted_peptide_4|117_aa
MGAPSRATQLSSAEVALKGLTAEGYRRQHFWGVGVAMNVGTVGWKQVTPRTIQGRSCHLQ
VVSLKDTKPAQMLSTDIVKVLHYVSQKTRETIFRDLGDHQPKGTDWCHKSGYGIERK

>gi568815590f:60417208_60720766|GENSCAN_predicted_CDS_4|354_bp
atgggagcaccgtcccgggcaacacagctttcctcagctgaggttgctctgaagggactg
acagcagagggctaccgaagacagcacttctggggtgtgggggttgccatgaatgtgggc
acagttggatggaagcaggtcactcctaggacaatacaaggaagatcctgccaccttcaa
gttgtgtctctaaaggacacaaagcctgctcagatgctgtcaacagatattgtaaaggtc
cttcactatgtgagtcagaagaccagagaaactatctttagagatctgggagatcatcag
cctaaaggtactgattggtgtcataagagtggttatggtattgagcgtaaatga

>gi568815590f:60417208_60720766|GENSCAN_predicted_peptide_5|100_aa
MELDEWERIGRDFKKVHKEGAKIPFSVWSAWVLIKAALEPFETDDEADSYEEEADSECEG
QDPEEIKEKKGKLKKVYFTSQSVPPAELSEWPPPPSPPNG

>gi568815590f:60417208_60720766|GENSCAN_predicted_CDS_5|303_bp
atggagttggatgaatgggaaagaattggcagagattttaaaaaggtgcataaagaagga
gccaaaattccattttctgtttggtcagcgtgggtgttgataaaggcagctcttgagcca
tttgaaacagatgatgaggcagattcatatgaggaagaggcagattctgaatgtgaggga
caggacccggaggaaattaaagaaaagaaagggaagctgaaaaaggtgtattttactagc
cagtcggttccacctgctgaattaagtgaatggccacctcctccctctcctcctaatggg
tga

>gi568815590f:60417208_60720766|GENSCAN_predicted_peptide_6|130_aa
MSYSRKRRLWEEPKLLIRVIPQTNISETKEKTENSRQANSPTWGQIKKLVQMAKDNLKAQ
NKLKTTSNLMVAMLAVLTMAASLLTIGATQNFTYWAYVSFPPLIRSVSWMDPVIKVYTNV
STWMPAPIDN

>gi568815590f:60417208_60720766|GENSCAN_predicted_CDS_6|393_bp
atgagctacagcaggaagagaagactctgggaagagccaaaactcctgatacgagtgatt
ccgcaaacaaacatctcagagacaaaggagaaaaccgagaatagtcgtcaggcaaattct
ccaacatggggacaaatcaagaagctggtgcagatggcaaaggacaacttgaaagcacag
aacaaactaaaaacaactagtaacctgatggtggccatgctggcagtactcaccatggcg
gcaagcctccttactataggagcaactcagaatttcacttattgggcatatgtctcattt
cctcctttaattaggtctgtgagttggatggaccctgttattaaggtgtacaccaacgtc
agtacctggatgccagcacccatagataactga

>gi568815590f:60417208_60720766|GENSCAN_predicted_peptide_7|135_aa
MSGVQGLKPLVAFGTPSSVLKAPHSRRLTAAAAAAGGAWRFEAERHRGWGAEEEQQREEE
PCALALSGRGHGVRLSLQVHHNRRHSAGAGDVGTASGRGLARPGLRPPTRPVLQLRAVAA
VCDARFRKCVTGGEA

>gi568815590f:60417208_60720766|GENSCAN_predicted_CDS_7|408_bp
atgtccggggtccagggtctaaaacccctcgtggcctttggaacaccaagctctgtgcta
aaggcccctcactcccggcggctgacagcagcagcggcggcggcgggcggcgcctggcgt
ttcgaggctgagcggcaccggggttggggcgcggaggaggagcagcagcgggaggaggag
ccgtgtgccctggcactgagcggccgcggccatggcgtacgcctatctcttcaagtacat
cataatcggcgacacagtgctggagctggtgacgtgggcactgcgagcggccgcggcctg
gccaggcccggtctgcggcccccgacccggccagtcttgcagctgagggccgtggcagcc
gtttgcgacgcccgattcaggaagtgtgtgacaggaggggaggcctag

>gi568815590f:60417208_60720766|GENSCAN_predicted_peptide_8|206_aa
MTLKEHAAFKHLFNKAHLAPPLIHSTLSGYSTCFREHRVGGVGKSCLLLQFTDKRFQPVH
DLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRDLESR
REVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEANGIK
IGPQHAATNATHAGNQGGQQAGGGCC

>gi568815590f:60417208_60720766|GENSCAN_predicted_CDS_8|621_bp
atgactcttaaggagcatgctgccttcaagcatctgtttaacaaagcacatcttgcaccg
cccttaatccattcaaccctgagtggatacagcacatgtttcagagaacacagggttggg
ggtgttggtaaatcatgcttattgctacagtttacagacaagaggtttcagccagtgcat
gaccttactattggtgtagagttcggtgctcgaatgataactattgatgggaaacagata
aaacttcagatatgggatacggcagggcaagaatcctttcgttccatcacaaggtcgtat
tacagaggtgcagcaggagctttactagtttacgatattacacgtgatttagaatctaga
agagaagtaaaaaaagaagaaggtgaagcttttgcacgagaacatggactcatcttcatg
gaaacgtctgctaagactgcttccaatgtagaagaggcatttattaatacagcaaaagaa
atttatgaaaaaattcaagaaggagtctttgacattaataatgaggcaaatggcattaaa
attggccctcagcatgctgctaccaatgcaacacatgcaggcaatcagggaggacagcag
gctgggggcggctgctgttga

>gi568815590f:60417208_60720766|GENSCAN_predicted_peptide_9|168_aa
MLPGITSQQTYWQPNHVSVGFAENPDLRKERKRKKERKKRKEKKRKEKKEKEKEKERKKK
GKKERKKKKERKKEKERKKERKKERKKERERKKERKKRKKEKRLSGKARRIRNAGHYCTC
HVFKNVTVQTSDSASQDDIWPSDQATQWRCACQPREIMEVQGAKCSHA

>gi568815590f:60417208_60720766|GENSCAN_predicted_CDS_9|507_bp
atgcttcctgggatcacctcccagcaaacgtattggcaaccaaatcatgtcagcgttggc
tttgcggagaatccagacttgaggaaagaaagaaagagaaagaaagaaagaaagaaaaga
aaagaaaagaaaagaaaagaaaagaaagaaaaagagaaagagaaagaaagaaagaaaaaa
ggaaagaaagaaagaaagaaaaagaaagaaagaaagaaagaaaaagaaagaaagaaagaa
agaaagaaagaaagaaagaaagaaagagaaagaaagaaagaaagaaagaaaagaaagaaa
gaaaaacgactaagtgggaaggcaagaagaattaggaatgctggacactactgcacttgc
catgttttcaagaatgtcaccgtgcagaccagtgattccgcctcgcaggatgacatatgg
ccctcggaccaggcgacacagtggagatgcgcatgccagcctcgtgaaatcatggaggtt
caaggggcaaagtgttcacatgcctaa

>gi568815590f:60417208_60720766|GENSCAN_predicted_peptide_10|220_aa
MLARLVSNLTSARLLLWWGACESPEDVFRLWVRRSRYSHEDAAGVQTTLVTRLSVHNPSR
ATDERSNGHKLQNQCLKRETTGTVRGSDPLALIAISDVPALSQRGQRHPGYRTGDGGGPS
GSYQSPRDARLTAAGEEEPSRPKKSPQAQGRTAAAAACAATRLRLADSGAGTPGPARGEQ
EKEQDGNVRKGKVSGKGRDAERINDHVKRAQRSFDGFALE

>gi568815590f:60417208_60720766|GENSCAN_predicted_CDS_10|663_bp
atgttggccaggctggtctcgaacctgacctcagcccggcttctcctgtggtggggtgca
tgtgagtcccctgaagatgtctttagactctgggtcagacgatccaggtacagccatgag
gatgctgctggcgttcaaaccacacttgtgacaaggctttctgttcacaacccatccaga
gctacagatgagcgctctaatggccacaaactacagaaccagtgcctaaagagagagacc
acaggaactgtaaggggtagtgacccgttagccttgattgccattagcgatgtgccagct
ctcagccaaagggggcagcgacatccgggctaccggactggcgacggcggcggcccctcg
ggcagctaccagtccccgcgggatgcccggctcaccgccgccggagaagaggagccctcc
aggccaaaaaaatccccccaagcccagggtcgcaccgcggcggccgcggcatgtgccgcc
acccgcctccgcctcgcagactccggggccgggacgccggggccagcacgcggagagcaa
gaaaaggaacaagatggaaatgtcagaaaagggaaagtaagcggcaaaggcagagatgca
gaaaggatcaatgaccacgtgaagcgagctcaaagaagctttgatggctttgccttggaa
taa

>gi568815590f:60417208_60720766|GENSCAN_predicted_peptide_11|66_aa
MIGWGREKRRDVWEWARRALRFGLAAEGGKGGRAGSKPELTLWGAGLAPKQRQPALCPAV
EIVCGL

>gi568815590f:60417208_60720766|GENSCAN_predicted_CDS_11|201_bp
atgatcggatggggaagggagaagcgcagagatgtttgggaatgggcgagaagagcgttg
agatttgggctagcggctgaaggtggcaagggtggaagggctggctctaaaccagagctg
actctatggggtgcaggcctggctcccaagcagcggcagccagcactctgtcctgccgtg
gagattgtttgtggcctttga

>gi568815590f:60417208_60720766|GENSCAN_predicted_peptide_12|251_aa
METMSGPILLRLRWVTASHGTLELVTEERRAKGAQSRSTCSGLDSLGYETTVVFLGIPPP
LLVLMNLPILMNYCAYSRHSARLSSSRKASLISQVLSTFPLSSGYTELRRWRAGAAAAAA
AAAAAAAAAAARGLSRGGADALVLGNYRIKLESSEITQRSAAEEAARGPGHPETHQRPVR
PRPTPCPWIQPPGRSCRANSGARSAFCFPLGTRQRRSPTDPANYLIDLRRSFFSCDMGAV
TVLTSSQAYVD

>gi568815590f:60417208_60720766|GENSCAN_predicted_CDS_12|756_bp
atggagacaatgagtggcccaatattacttagattaaggtgggtaacagcaagtcatgga
acattggagctggtaactgaagagagaagagccaaaggggcacagtccagatccacttgc
agtggcctggactcactgggctatgaaaccactgttgtcttcttgggaatccctcctccc
ctgcttgttctgatgaatctccctattctgatgaattactgtgcctactcaagacacagt
gcaaggctctcatcttctaggaaggcttccctgatatcccaggtccttagtacctttcca
ctgtcctctggctacacggaactcaggcgctggcgtgctggggccgcggcggcggcggcg
gcggcggcggcagcggcggcggcggcggcggcgcgggggttgagtcgtggtggtgcggac
gcgctcgtgctcgggaactatcggattaaacttgaatcgagtgaaattacacaaaggagc
gccgcggaggaggcggcccggggacccggacaccctgaaactcaccagagacccgttcgc
ccccggccaactccgtgcccgtggattcagccccctggccgcagctgccgagccaactcc
ggagcccgctctgcgttttgttttcccctcggcactaggcagcggaggagcccgaccgac
ccggccaattacttaattgatctaagacgcagtttcttcagctgtgacatgggagcagta
acagtacttactagttcacaggcttatgtggattaa

>gi568815590f:60417208_60720766|GENSCAN_predicted_peptide_13|80_aa
MVQRTGFKETKKAKNTHGMILDFTGNKRKAPIKLAKDTLTGAELHCLPNEEGPPVLELPE
GRPGTQNYKWAVGYEGKTGC

>gi568815590f:60417208_60720766|GENSCAN_predicted_CDS_13|243_bp
atggtgcagaggacaggctttaaggaaacgaagaaggccaaaaacacacatggaatgata
cttgacttcactggtaataaaagaaaggcacctatcaaattggcaaaagacacgctcact
ggagctgagcttcactgcctgccgaatgaggagggtcccccagtgctggagctccctgag
ggcagacctggaacacagaattacaagtgggctgtgggctacgaaggcaaaacaggctgc
tga