GENSCAN 1.0	Date run:  4-Nov-116	Time: 20:47:17

Sequence gi568815589r:23592560_23862234 : 269675 bp : 38.70% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.03 PlyA -   3064   3059    6                               1.05
 1.02 Term -  10886  10818   69  2  0   54   34   146 0.527   2.76
 1.01 Init -  24344  24288   57  2  0   82   88    40 0.251   4.76
 1.00 Prom -  32782  32743   40                              -3.65

 2.00 Prom +  34417  34456   40                              -3.65
 2.01 Init +  39401  39406    6  1  0   59  110     0 0.482   0.33
 2.02 Intr +  39490  39609  120  0  0   58   40   113 0.245   3.27
 2.03 Intr +  40751  40842   92  1  2   28   71    78 0.058  -2.03
 2.04 Intr +  48843  48950  108  0  0   14   68   111 0.087   0.18
 2.05 Intr +  51468  51645  178  0  1   42  115    99 0.236   7.00
 2.06 Intr +  54139  54215   77  0  2   43   96    94 0.831   3.09
 2.07 Term +  56241  56370  130  0  1   23   44   142 0.778  -0.03
 2.08 PlyA +  56865  56870    6                               1.05

 3.07 PlyA -  58588  58583    6                               1.05
 3.06 Term -  58896  58801   96  0  0  110   43   114 0.628   6.09
 3.05 Intr -  71107  70951  157  0  1   41   75   140 0.127   7.09
 3.04 Intr -  73797  73706   92  0  2   44   94    34 0.103  -2.53
 3.03 Intr -  76829  76725  105  2  0   27   82   103 0.121   3.09
 3.02 Intr -  78866  78841   26  0  2   86   86    31 0.429  -0.47
 3.01 Init -  79841  79730  112  2  1   83   83    73 0.351   6.72
 3.00 Prom -  82274  82235   40                              -3.45

 4.00 Prom +  82355  82394   40                              -5.85
 4.01 Init +  89338  89648  311  0  2   43  -34   291 0.689   9.23
 4.02 Term +  89714  90239  526  2  1   36   38   457 0.884  28.25
 4.03 PlyA +  90902  90907    6                               1.05

 5.08 PlyA -  92388  92383    6                               1.05
 5.07 Term - 100325  99998  328  1  1   73   39   366 0.896  23.40
 5.06 Intr - 109045 108820  226  2  1   52   97   237 0.953  17.12
 5.05 Intr - 112512 112359  154  0  1  103  119   154 0.984  18.72
 5.04 Intr - 128996 128921   76  1  1   69   99    21 0.006  -0.10
 5.03 Intr - 136474 136374  101  1  2   90   57    58 0.004   0.89
 5.02 Intr - 138566 138463  104  0  2   93   53   111 0.042   7.07
 5.01 Init - 144321 144267   55  0  1   64   29    52 0.030  -1.60
 5.00 Prom - 145815 145776   40                              -6.85

 6.00 Prom + 148199 148238   40                              -5.15
 6.01 Init + 148628 148691   64  1  1   94   83    56 0.979   7.06
 6.02 Term + 150354 150586  233  1  2   40   41   161 0.739   2.25
 6.03 PlyA + 151890 151895    6                               1.05

 7.06 PlyA - 151928 151923    6                               1.05
 7.05 Term - 161264 161118  147  2  0   67   55    94 0.636   0.92
 7.04 Intr - 164495 164299  197  0  2   42   73    95 0.672   1.61
 7.03 Intr - 169687 169447  241  1  1   99  115   219 0.423  21.90
 7.02 Intr - 193163 193056  108  2  0   61   51    94 0.001   2.56
 7.01 Init - 201428 201348   81  2  0   40   86    66 0.028   2.62
 7.00 Prom - 206340 206301   40                              -3.25

 8.00 Prom + 227391 227430   40                              -4.95
 8.01 Init + 228990 229141  152  2  2   83  -15   188 0.632   5.61
 8.02 Intr + 229292 229597  306  2  0   40   14   370 0.501  19.44
 8.03 Intr + 232384 232532  149  1  2   16   49   116 0.067  -0.54
 8.04 Term + 238879 239009  131  2  2   80   54   110 0.665   4.16
 8.05 PlyA + 239389 239394    6                               1.05

 9.03 PlyA - 240188 240183    6                               1.05
 9.02 Term - 259047 258519  529  2  1   50   39   258 0.591   9.84
 9.01 Init - 267843 267773   71  0  2   75  105     1 0.501   1.07

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init + 191113 191193   81  0  0   87  119    25 0.808   6.52
S.002 Term + 192575 192799  225  1  0   36   48   167 0.826   3.30


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815589r:23592560_23862234|GENSCAN_predicted_peptide_1|41_aa
MTNCKFQVANMMTLNSEREKPLATRGDRARNVARVMEELKL

>gi568815589r:23592560_23862234|GENSCAN_predicted_CDS_1|126_bp
atgaccaattgcaagtttcaggttgccaacatgatgacactgaattcagaaagagagaag
ccactggccacacgtggcgaccgagctcgaaatgtggccagagtgatggaagagctgaag
ttgtaa

>gi568815589r:23592560_23862234|GENSCAN_predicted_peptide_2|236_aa
MQVKTRYLLCEVAAEEILAPTEANEKPNEGMKTQNHHCITLKAEGKQERSIFDSKQRNYI
AISVFTIRYKNYSISQQTTGEPICETVTRDGGGHLTESTDLLTQEALLSTTQASRGTVAM
DPKRQYSLGTVVVLGYPEMTKQAVNLNGGKRSRSAHEVGEQNDDRGHMYKNQKFNDITEV
TKSQIRQTTDTKTREAEGNVVTQEKACGHRDWSDAATSQELGQPPEAGRGKEQILP

>gi568815589r:23592560_23862234|GENSCAN_predicted_CDS_2|711_bp
atgcaggtgaagactcgatacctcctttgtgaggtggcagctgaggagattctggcaccc
actgaggccaatgaaaagcccaacgaaggaatgaagactcagaaccaccactgcattact
ttgaaggcagaaggaaaacaagagcggagcatctttgactcgaaacaacgaaactacatt
gcaatatccgttttcaccatccgatacaaaaattacagcatttcccagcagacaacaggg
gagccaatttgtgaaacggtaaccagagatggtggaggtcacctcacagagagcactgac
ctcttaacccaagaagctctgctcagtaccactcaagcctctagggggacagtggctatg
gatcccaaaagacagtactctcttggcacagtggtagtactggggtaccctgagatgact
aaacaggcagtgaatttaaatggtggcaagagaagtaggagtgcacatgaagtgggagag
caaaatgatgatagaggccatatgtataaaaaccaaaagtttaatgacattactgaagtc
accaaatctcagattcgacagaccaccgacactaaaacaagggaagcagaaggcaacgtg
gtgacacaagagaaggcctgtggtcacagagactggagtgatgcagccacaagccaagaa
cttgggcagccaccagaagctggaagagggaaggaacagattctcccttag

>gi568815589r:23592560_23862234|GENSCAN_predicted_peptide_3|195_aa
MRESELRCNLNPWNLEKEASAERSGVDLDLLSGSCHGDEDSEIIQVCSVSIRSCSDLAVT
LSTQDDTKRSHADAGLPVEHQKTTWLSITKHPDFSLILRCQDPSENFVEVPYLFRKVWPC
EENYSQRESAQMSVIVKSRIFYERCWRDFTTDSPVHLCEQKVGQGPQSSDTLRLLRELIP
VFGNAPALSVLQEST

>gi568815589r:23592560_23862234|GENSCAN_predicted_CDS_3|588_bp
atgcgtgaaagtgagctcagatgtaacctaaacccatggaacttggaaaaagaagcatct
gccgagaggagcggggttgatcttgatttgctttcagggagttgccacggagatgaggac
tctgagattatccaggtatgttcagtctctattcgcagttgtagtgatttagcagtaacg
ttatcaacgcaagatgacaccaaaagatctcatgctgatgctggactcccagtggaacac
cagaagaccacctggctcagtatcacaaagcaccctgatttctccctcatcttgagatgt
caggatccctcagaaaacttcgtagaggtgccctatttgttccgcaaggtgtggccttgt
gaagagaattatagtcaacgggaaagtgcgcagatgtcagtcattgttaaatcaaggatc
ttttacgagagatgttggcgagatttcaccactgatagtcctgttcacctgtgtgaacag
aaagttgggcagggcccacaatcatcggacaccttgcggcttttgcgtgagcttattcct
gtgtttggaaacgcccctgccttgtctgtacttcaagaatcaacttaa

>gi568815589r:23592560_23862234|GENSCAN_predicted_peptide_4|278_aa
MTKGNTPKYGLVFHSTFTGQAAARNKGRISQYLANKCSIASQIDCFAEVLMSIFGEKLQE
QVEERLSFYETGEILSKKMDVMKTEMVQAEKTAAEIIRKLEKQETPEECAKTSVKPKKKK
KQKPQEAPQENGIKDPSNSFSKPNKRKSFSKEKLVSSHREETAGSISLPNRKTSSPKEEA
VNDPKEAGNRSVTKKKTGNSPSKRKELVSSGPEEAAGSKSSSKKKKKLHKVPQEDESANG
RPPSGGAHPTPRRHFPFRVLHPNKKFSHTKHIVNPKAV

>gi568815589r:23592560_23862234|GENSCAN_predicted_CDS_4|837_bp
atgacaaagggtaatacaccaaaatatggactcgttttccactccaccttcactggccaa
gcagctgccaggaataaaggtcgcatctcccaatacctggcaaacaaatgcagtattgcc
tcgcaaatcgactgcttcgctgaggtgctcatgagcatatttggggagaagcttcaagaa
caagttgaagagagactgtctttctatgagactggagagatcctatcaaagaaaatggat
gtcatgaaaacagaaatggttcaggcagagaaaacggctgctgagattattaggaagctg
gagaaacaggaaactccagaggagtgtgcaaagacaagtgtaaaacccaaaaagaagaaa
aagcaaaagccccaggaggctcctcaggagaatggaatcaaagacccatctaactctttc
tccaaacctaataaaaggaaatctttttccaaggagaaattggttagcagccatcgagaa
gagaccgctggcagcatcagtcttcccaacaggaagacgtcttcacccaaggaggaagca
gttaatgatcccaaagaggcaggcaacaggagtgtcactaagaaaaaaacaggaaattcc
ccttcaaagaggaaggagctggtcagcagtggacctgaagaggctgctggcagcaagagc
agctccaagaagaagaaaaagttacataaagtaccccaggaagatgagagtgcaaacgga
cgtcccccgtcaggcggggcacatcctaccccaaggcgacatttcccattccgtgtccta
caccccaataaaaaattctcacacacgaagcatattgtgaatcctaaggcagtatga

>gi568815589r:23592560_23862234|GENSCAN_predicted_peptide_5|347_aa
MSESRSEQKTDSDWKPEYGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKGPAAWAE
YVEESTVKLCGFYSVTSVSDFLRCGSGTLLNAAIGLGGVSLGFVFCSWFLDQVSYARPSS
ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEA
EEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRF
SPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFN
TNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHKA

>gi568815589r:23592560_23862234|GENSCAN_predicted_CDS_5|1044_bp
atgagcgaaagtagaagtgagcaaaaaactgacagtgactggaaaccagagtatgggcag
agcttgggatatggctttgtgaactacattgaccccaaggatgcagagaaagctatcaac
accctgaatggattgagacttcaaaccaaaacaataaaaggcccagctgcttgggctgaa
tatgtggaagaaagcacagtaaagctttgtggcttttatagtgtgacatcagtttctgat
tttctgagatgtgggtcaggaactcttttgaatgctgcaataggacttggaggtgtaagt
cttggatttgtgttctgttcttggtttcttgatcaggtttcctatgctcgcccaagttca
gcttctatcagagatgcaaatttatatgtcagcggacttccaaaaacaatgacccagaag
gagttggaacagcttttttcacaatatggacgcattattacttctcgtattcttgtcgac
caggtcactggcatatcaaggggtgtagggtttattcgatttgacaagcgaattgaggca
gaagaagctatcaaaggcctaaatggccagaaacctcccggtgccacggagccaatcact
gtaaagtttgctaataacccaagccaaaaaaccaatcaggccatcctttcccagctgtac
cagtctccaaacagaaggtatccaggaccgctagctcagcaggcacagcgttttaggttt
tctccaatgaccattgacggaatgaccagtttggctggaattaatatccctgggcaccct
ggaacagggtggtgtatatttgtgtacaacctggctcctgacgcagatgagagtatcctg
tggcaaatgtttgggccttttggagctgtcaccaatgtgaaggtcatccgtgactttaac
accaataaatgcaaaggttttggatttgtgactatgacaaactatgatgaggctgccatg
gcgatagctagcctcaatggataccgtctgggagacagagtactgcaggtctcctttaag
acaaacaaaacgcacaaagcctaa

>gi568815589r:23592560_23862234|GENSCAN_predicted_peptide_6|98_aa
MEKNKFVKKYKRDKPKAYYAERKIPKQTDGVWAGGGINAEYKGNLFKYYRHSFTNLKNTL
SEAIKKRNPNGTQSPEEIELYMVKVVKAMGQMGTMATN

>gi568815589r:23592560_23862234|GENSCAN_predicted_CDS_6|297_bp
atggagaagaacaaatttgtaaagaagtataaaagagacaagccaaaagcatactacgct
gaacgaaaaattccaaaacagactgatggtgtttgggctggtgggggtataaatgctgag
tataaaggaaacctatttaaatactacagacacagcttcacaaacctcaagaacactctc
tctgaagcaataaagaaaaggaatcctaatggaacacagtccccagaggaaattgagctg
tacatggttaaagttgtaaaggctatgggtcagatgggaaccatggctacgaattaa

>gi568815589r:23592560_23862234|GENSCAN_predicted_peptide_7|257_aa
MGPYKWLYDIVHAKLPGKSSWRTVFKGIDADLEQLLIDRIGLDFYVVTDSYSYWEFWVNR
RETVIAAMETQLSNGPTCNNTANGPTTINNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQE
ELKSLFGSIGEIESCKLVRDKITGSFGICCQRASQVILKPKKVLGIRLCLMKYGHRIPAL
ESLVMSARNARSWALSRPTESESVVGTWKHKSARVLFAIPDLFWGVVFVYFASGDWWYRR
DTILNLSACRRNDGKCR

>gi568815589r:23592560_23862234|GENSCAN_predicted_CDS_7|774_bp
atggggccttacaaatggctgtatgatatagtgcatgctaagttaccaggaaagagctct
tggaggactgtttttaaagggattgatgcagacctggagcagctgctcattgacagaata
ggtctagatttctatgtcgtgactgattcgtactcatactgggagttttgggttaacaga
cgtgagacagtaattgctgccatggaaacacaactgtctaatgggccaacttgcaataac
acagccaatggtccaaccaccataaacaacaactgttcgtcaccagttgactctgggaac
acagaagacagcaagaccaacttaatagtcaactaccttcctcagaacatgacacaggag
gaactaaagagtctctttgggagcattggtgaaatagagtcctgtaagcttgtaagagac
aaaataacagggagttttggaatctgttgtcagagagcttcccaggtgatcttgaagccc
aaaaaagttttgggaatcagactgtgtctcatgaagtatggtcacaggattcccgcattg
gaatcacttgtaatgagtgctagaaatgcacggtcctgggctctgtccaggcctactgaa
tcagaatctgtagtggggacctggaagcataagagtgcacgtgtgctgtttgctattcca
gaccttttctggggggtagtctttgtttactttgcatcaggagattggtggtatagaaga
gacaccattctcaatttaagcgcttgtcgtaggaatgatggaaaatgtcgatga

>gi568815589r:23592560_23862234|GENSCAN_predicted_peptide_8|245_aa
MDQGQGADAVPAPTPPALACCDSKLQLLRLVPLAVSTAAEESLGASSAERRGAGRRGLLG
RAPGGGAGGEFAAPRPPPARALPDRPSGPCRQGDAGLQQLSSVPPDFRVSPGFPDKVSLD
SVESVERPEEADSRCKFANPEARGANGESEQLTRSQPRRTKDRAWNPLPSAQHSEAPKQP
ALHRHSSKDLIYAFLNKGNLISEQVPAPGHGDKGGVCIRRRLRPGETQRLEKQLSYQPAA
EMEMA

>gi568815589r:23592560_23862234|GENSCAN_predicted_CDS_8|738_bp
atggaccaggggcaaggcgcggacgccgtccccgcccccacgcccccagcacttgcctgc
tgtgactcgaagctgcagctactacggctcgtgccgctggccgtcagcactgccgcggag
gagtcgctcggggcgagctccgcggagaggcgcggggcgggaaggaggggcttgcttgga
agagcgccaggaggcggggccggcggcgagttcgcggcgccgcggccgccgccggcgcgt
gccctgcccgaccgcccttcgggtccgtgccggcagggagatgccgggcttcagcagctc
agctccgtccctccggacttccgagtctcaccaggcttccccgacaaggtttctctggac
tcggtggagagcgttgagcgcccagaggaggctgattccaggtgcaagtttgcaaatccc
gaggcccggggcgctaacggggagtcagagcagctaacgcgaagtcagccgcgtaggacc
aaggacagggcttggaatccacttcccagcgcccagcacagcgaggctcccaagcagccg
gcacttcatagacacagctccaaggatcttatttacgcttttctgaacaaagggaatctc
atatccgagcaagtgccggcaccgggccacggtgacaaaggcggagtttgtatcagaaga
agactgaggcccggggagacacagcggctagagaaacagctgtcttatcagcccgctgca
gagatggagatggcttga

>gi568815589r:23592560_23862234|GENSCAN_predicted_peptide_9|199_aa
MQEGKRFIIQRIEHSREGFNLFSCLASTGKTQSGVRSEEDEGSGEKGKRERRGLVPNVVT
SLRTCGADALKRDGGVGRRGVPNGQGQEPSPDLGVSDPDTRSSILAALPRGSDFLSVRLQ
SSSPTGCALPRCRSYSCSLNPSQGLSGWFYFALLAVQPAPDTVPGTGRSAAHVEAASRAS
GAALSRLRVLTGSCKLLAS

>gi568815589r:23592560_23862234|GENSCAN_predicted_CDS_9|600_bp
atgcaagagggcaagaggttcattatccaaaggatagaacattccagggaaggtttcaat
cttttttcctgcctggccagcacaggcaagactcagagtggagtgagaagtgaagaggat
gaagggtcgggagagaaagggaagagagagaggcgggggctagtccccaacgtggtgact
tcgctgcgcacctgtggggccgacgctctgaagcgggacgggggtgttggtcggaggggg
gtacccaatggccaggggcaggagccctcgcccgacttgggagtctcggaccctgacact
cgctccagcatcctggcagccctcccgagagggtcggactttctttcggtcaggttgcag
agttcttccccgactggctgcgcgctgcctcggtgcagaagttactcctgcagtctcaac
cccagccagggcctctcgggctggttttattttgcccttctcgccgtgcagcccgccccc
gacaccgtcccgggcactgggaggagcgcggctcacgtggaggcggcgtcccgcgcctcc
ggagcagcgctgagtaggctgcgcgtgttgaccggcagttgcaaactattggccagttaa