Result of FASTA (omim) for pF1KB3105
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3105, 164 aa
  1>>>pF1KB3105 164 - 164 aa - 164 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.1941+/-0.000312; mu= 5.7354+/- 0.020
 mean_var=239.6198+/-50.663, 0's: 0 Z-trim(123.8): 125  B-trim: 1614 in 1/58
 Lambda= 0.082854
 statistics sampled from 44012 (44205) to 44012 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.831), E-opt: 0.2 (0.518), width:  16
 Scan time:  6.080

The best scores are:                                      opt bits E(85289)
NP_003008 (OMIM: 603364) serine/arginine-rich spli ( 164) 1157 149.7 1.9e-36
XP_005264542 (OMIM: 600572) PREDICTED: serine/argi ( 223)  557 78.2 9.1e-15
NP_001182375 (OMIM: 600572) serine/arginine-rich s ( 226)  557 78.2 9.2e-15
XP_005264541 (OMIM: 600572) PREDICTED: serine/argi ( 235)  557 78.2 9.4e-15
NP_001026854 (OMIM: 600572) serine/arginine-rich s ( 238)  557 78.2 9.4e-15
NP_006616 (OMIM: 605221) serine/arginine-rich spli ( 183)  334 51.4 8.5e-07
NP_001287866 (OMIM: 605221) serine/arginine-rich s ( 217)  334 51.5 9.5e-07
NP_473357 (OMIM: 605221) serine/arginine-rich spli ( 262)  334 51.6 1.1e-06
NP_001177935 (OMIM: 605221) serine/arginine-rich s ( 173)  331 51.0 1.1e-06
NP_001287865 (OMIM: 605221) serine/arginine-rich s ( 172)  326 50.4 1.6e-06
NP_001177936 (OMIM: 605221) serine/arginine-rich s ( 182)  323 50.1 2.1e-06
NP_001177934 (OMIM: 605221) serine/arginine-rich s ( 261)  323 50.3 2.6e-06
NP_001177938 (OMIM: 605221) serine/arginine-rich s ( 165)  309 48.4 6.4e-06
XP_016872631 (OMIM: 603269) PREDICTED: serine/argi ( 282)  294 46.9   3e-05
NP_115285 (OMIM: 603269) serine/arginine-rich spli ( 282)  294 46.9   3e-05
XP_005268057 (OMIM: 600914) PREDICTED: serine/argi ( 271)  291 46.5 3.8e-05
XP_016877082 (OMIM: 600914) PREDICTED: serine/argi ( 271)  291 46.5 3.8e-05
XP_005268056 (OMIM: 600914) PREDICTED: serine/argi ( 271)  291 46.5 3.8e-05
NP_001307143 (OMIM: 600914) serine/arginine-rich s ( 272)  291 46.5 3.8e-05
NP_008856 (OMIM: 600914) serine/arginine-rich spli ( 272)  291 46.5 3.8e-05
NP_001034554 (OMIM: 600914) serine/arginine-rich s ( 272)  291 46.5 3.8e-05
NP_001071634 (OMIM: 600812) serine/arginine-rich s ( 201)  257 42.3 0.00053
NP_008855 (OMIM: 600812) serine/arginine-rich spli ( 248)  257 42.4  0.0006
XP_011535379 (OMIM: 600914) PREDICTED: serine/argi ( 239)  237 40.0  0.0031
NP_006266 (OMIM: 601944) serine/arginine-rich spli ( 344)  234 39.8  0.0049
XP_011540253 (OMIM: 601940) PREDICTED: serine/argi ( 464)  229 39.4  0.0089
NP_005617 (OMIM: 601940) serine/arginine-rich spli ( 494)  229 39.4  0.0093


>>NP_003008 (OMIM: 603364) serine/arginine-rich splicing  (164 aa)
 initn: 1157 init1: 1157 opt: 1157  Z-score: 775.2  bits: 149.7 E(85289): 1.9e-36
Smith-Waterman score: 1157; 100.0% identity (100.0% similar) in 164 aa overlap (1-164:1-164)

               10        20        30        40        50        60
pF1KB3 MHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 DAVRELDGRTLCGCRVRVELSNGEKRSRNRGPPPSWGRRPRDDYRRRSPPPRRRSPRRRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 DAVRELDGRTLCGCRVRVELSNGEKRSRNRGPPPSWGRRPRDDYRRRSPPPRRRSPRRRS
               70        80        90       100       110       120

              130       140       150       160    
pF1KB3 FSRSRSRSLSRDRRRERSLSRERNHKPSRSFSRSRSRSRSNERK
       ::::::::::::::::::::::::::::::::::::::::::::
NP_003 FSRSRSRSLSRDRRRERSLSRERNHKPSRSFSRSRSRSRSNERK
              130       140       150       160    

>>XP_005264542 (OMIM: 600572) PREDICTED: serine/arginine  (223 aa)
 initn: 977 init1: 427 opt: 557  Z-score: 386.1  bits: 78.2 E(85289): 9.1e-15
Smith-Waterman score: 557; 60.0% identity (72.7% similar) in 165 aa overlap (9-163:10-170)

                10        20        30        40        50         
pF1KB3  MHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDA
                . ::::::::....: ::::::.::::::.::.::::::::::::::::::
XP_005 MSRYGRYGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDA
               10        20        30        40        50        60

      60        70        80         90       100                  
pF1KB3 ADAVRELDGRTLCGCRVRVELSNG-EKRSRNRGPPPSWGRRPRDDYRR---------RSP
        :::: :::...:: :::::::.:  .:::   ::   .::: :   :          . 
XP_005 EDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPP---ARRPFDPNDRCYECGEKGHYAY
               70        80        90          100       110       

     110       120       130       140       150       160         
pF1KB3 PPRRRSPRRRSFSRSRSRSLSRDRRRERSLSRERNHKPSRSFSRSRSRSRSNERK     
         .: : :::: :::::.: :: ::  :: :: :... ::: :  :::: : .:      
XP_005 DCHRYSRRRRSRSRSRSHSRSRGRRYSRSRSRSRGRR-SRSASPRRSRSISLRRSRSASL
       120       130       140       150        160       170      

XP_005 RRSRSGSIKGSRSPSRSRSRSRSISRPRSSRSPSGSPRRSASPERMD
        180       190       200       210       220   

>>NP_001182375 (OMIM: 600572) serine/arginine-rich splic  (226 aa)
 initn: 806 init1: 427 opt: 557  Z-score: 386.1  bits: 78.2 E(85289): 9.2e-15
Smith-Waterman score: 557; 60.0% identity (72.7% similar) in 165 aa overlap (9-163:10-170)

                10        20        30        40        50         
pF1KB3  MHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDA
                . ::::::::....: ::::::.::::::.::.::::::::::::::::::
NP_001 MSRYGRYGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDA
               10        20        30        40        50        60

      60        70        80         90       100                  
pF1KB3 ADAVRELDGRTLCGCRVRVELSNG-EKRSRNRGPPPSWGRRPRDDYRR---------RSP
        :::: :::...:: :::::::.:  .:::   ::   .::: :   :          . 
NP_001 EDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPP---ARRPFDPNDRCYECGEKGHYAY
               70        80        90          100       110       

     110       120       130       140       150       160         
pF1KB3 PPRRRSPRRRSFSRSRSRSLSRDRRRERSLSRERNHKPSRSFSRSRSRSRSNERK     
         .: : :::: :::::.: :: ::  :: :: :... ::: :  :::: : .:      
NP_001 DCHRYSRRRRSRSRSRSHSRSRGRRYSRSRSRSRGRR-SRSASPRRSRSISLRRSRSASL
       120       130       140       150        160       170      

NP_001 RRSRSGSIKGSRYFQSPSRSRSRSRSISRPRSSRSPSGSPRRSASPERMD
        180       190       200       210       220      

>>XP_005264541 (OMIM: 600572) PREDICTED: serine/arginine  (235 aa)
 initn: 1072 init1: 427 opt: 557  Z-score: 385.9  bits: 78.2 E(85289): 9.4e-15
Smith-Waterman score: 557; 60.0% identity (72.7% similar) in 165 aa overlap (9-163:10-170)

                10        20        30        40        50         
pF1KB3  MHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDA
                . ::::::::....: ::::::.::::::.::.::::::::::::::::::
XP_005 MSRYGRYGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDA
               10        20        30        40        50        60

      60        70        80         90       100                  
pF1KB3 ADAVRELDGRTLCGCRVRVELSNG-EKRSRNRGPPPSWGRRPRDDYRR---------RSP
        :::: :::...:: :::::::.:  .:::   ::   .::: :   :          . 
XP_005 EDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPP---ARRPFDPNDRCYECGEKGHYAY
               70        80        90          100       110       

     110       120       130       140       150       160         
pF1KB3 PPRRRSPRRRSFSRSRSRSLSRDRRRERSLSRERNHKPSRSFSRSRSRSRSNERK     
         .: : :::: :::::.: :: ::  :: :: :... ::: :  :::: : .:      
XP_005 DCHRYSRRRRSRSRSRSHSRSRGRRYSRSRSRSRGRR-SRSASPRRSRSISLRRSRSASL
       120       130       140       150        160       170      

XP_005 RRSRSGSIKGSRSPSRSRSRSRSISRPRSSRSKSRSPSPKRSRSPSGSPRRSASPERMD
        180       190       200       210       220       230     

>>NP_001026854 (OMIM: 600572) serine/arginine-rich splic  (238 aa)
 initn: 769 init1: 427 opt: 557  Z-score: 385.8  bits: 78.2 E(85289): 9.4e-15
Smith-Waterman score: 557; 60.0% identity (72.7% similar) in 165 aa overlap (9-163:10-170)

                10        20        30        40        50         
pF1KB3  MHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDA
                . ::::::::....: ::::::.::::::.::.::::::::::::::::::
NP_001 MSRYGRYGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDA
               10        20        30        40        50        60

      60        70        80         90       100                  
pF1KB3 ADAVRELDGRTLCGCRVRVELSNG-EKRSRNRGPPPSWGRRPRDDYRR---------RSP
        :::: :::...:: :::::::.:  .:::   ::   .::: :   :          . 
NP_001 EDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPP---ARRPFDPNDRCYECGEKGHYAY
               70        80        90          100       110       

     110       120       130       140       150       160         
pF1KB3 PPRRRSPRRRSFSRSRSRSLSRDRRRERSLSRERNHKPSRSFSRSRSRSRSNERK     
         .: : :::: :::::.: :: ::  :: :: :... ::: :  :::: : .:      
NP_001 DCHRYSRRRRSRSRSRSHSRSRGRRYSRSRSRSRGRR-SRSASPRRSRSISLRRSRSASL
       120       130       140       150        160       170      

NP_001 RRSRSGSIKGSRYFQSPSRSRSRSRSISRPRSSRSKSRSPSPKRSRSPSGSPRRSASPER
        180       190       200       210       220       230      

>>NP_006616 (OMIM: 605221) serine/arginine-rich splicing  (183 aa)
 initn: 488 init1: 178 opt: 334  Z-score: 243.0  bits: 51.4 E(85289): 8.5e-07
Smith-Waterman score: 334; 37.5% identity (64.3% similar) in 168 aa overlap (1-163:1-164)

               10        20        30        40             50     
pF1KB3 MHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWV-----ARNPPGFAFVEFED
       : :   : . ...: :....  . .:.: :: :::. .:.:     .: : :::.:.:::
NP_006 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED
               10        20        30        40        50        60

          60        70        80        90       100       110     
pF1KB3 PRDAADAVRELDGRTLCGCRVRVELSNGEKRSRNRGPPPSWGRRPRDDYRRRSPPPRRRS
        ::: ::...:: . .:: ........:.... :.      ::   .. :  .    :::
NP_006 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKE-GRNVYSSSRYDDYDRYRRS
               70        80        90       100        110         

         120       130       140       150       160               
pF1KB3 PRRRSFSRSRSRSLSRDRRRERSLSRERNHKPSRSFSRSRSRSRSNERK           
        : ::. : :::: : :   .:: :  :: .:.    ::::.: .:.:            
NP_006 -RSRSYERRRSRSRSFDYNYRRSYS-PRNSRPTGRPRRSRSHS-DNDRPNCSWNTQYSSA
      120       130       140        150       160        170      

NP_006 YYTSRKI
        180   

>>NP_001287866 (OMIM: 605221) serine/arginine-rich splic  (217 aa)
 initn: 621 init1: 178 opt: 334  Z-score: 242.2  bits: 51.5 E(85289): 9.5e-07
Smith-Waterman score: 334; 37.5% identity (64.3% similar) in 168 aa overlap (1-163:1-164)

               10        20        30        40             50     
pF1KB3 MHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWV-----ARNPPGFAFVEFED
       : :   : . ...: :....  . .:.: :: :::. .:.:     .: : :::.:.:::
NP_001 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED
               10        20        30        40        50        60

          60        70        80        90       100       110     
pF1KB3 PRDAADAVRELDGRTLCGCRVRVELSNGEKRSRNRGPPPSWGRRPRDDYRRRSPPPRRRS
        ::: ::...:: . .:: ........:.... :.      ::   .. :  .    :::
NP_001 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKE-GRNVYSSSRYDDYDRYRRS
               70        80        90       100        110         

         120       130       140       150       160               
pF1KB3 PRRRSFSRSRSRSLSRDRRRERSLSRERNHKPSRSFSRSRSRSRSNERK           
        : ::. : :::: : :   .:: :  :: .:.    ::::.: .:.:            
NP_001 -RSRSYERRRSRSRSFDYNYRRSYS-PRNSRPTGRPRRSRSHS-DNDRFKHRNRSFSRSK
      120       130       140        150       160        170      

NP_001 SNSRSRSKSQPKKEMKAKSRSRPNCSWNTQYSSAYYTSRKI
        180       190       200       210       

>>NP_473357 (OMIM: 605221) serine/arginine-rich splicing  (262 aa)
 initn: 626 init1: 178 opt: 334  Z-score: 241.3  bits: 51.6 E(85289): 1.1e-06
Smith-Waterman score: 334; 37.5% identity (64.3% similar) in 168 aa overlap (1-163:1-164)

               10        20        30        40             50     
pF1KB3 MHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWV-----ARNPPGFAFVEFED
       : :   : . ...: :....  . .:.: :: :::. .:.:     .: : :::.:.:::
NP_473 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED
               10        20        30        40        50        60

          60        70        80        90       100       110     
pF1KB3 PRDAADAVRELDGRTLCGCRVRVELSNGEKRSRNRGPPPSWGRRPRDDYRRRSPPPRRRS
        ::: ::...:: . .:: ........:.... :.      ::   .. :  .    :::
NP_473 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKE-GRNVYSSSRYDDYDRYRRS
               70        80        90       100        110         

         120       130       140       150       160               
pF1KB3 PRRRSFSRSRSRSLSRDRRRERSLSRERNHKPSRSFSRSRSRSRSNERK           
        : ::. : :::: : :   .:: :  :: .:.    ::::.: .:.:            
NP_473 -RSRSYERRRSRSRSFDYNYRRSYS-PRNSRPTGRPRRSRSHS-DNDRFKHRNRSFSRSK
      120       130       140        150       160        170      

NP_473 SNSRSRSKSQPKKEMKAKSRSRSASHTKTRGTSKTDSKTHYKSGSRYEKESRKKEPPRSK
        180       190       200       210       220       230      

>>NP_001177935 (OMIM: 605221) serine/arginine-rich splic  (173 aa)
 initn: 488 init1: 178 opt: 331  Z-score: 241.3  bits: 51.0 E(85289): 1.1e-06
Smith-Waterman score: 331; 36.7% identity (63.9% similar) in 166 aa overlap (1-161:1-163)

               10        20        30        40             50     
pF1KB3 MHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWV-----ARNPPGFAFVEFED
       : :   : . ...: :....  . .:.: :: :::. .:.:     .: : :::.:.:::
NP_001 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED
               10        20        30        40        50        60

          60        70        80        90       100       110     
pF1KB3 PRDAADAVRELDGRTLCGCRVRVELSNGEKRSRNRGPPPSWGRRPRDDYRRRSPPPRRRS
        ::: ::...:: . .:: ........:.... :.      ::   .. :  .    :::
NP_001 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKE-GRNVYSSSRYDDYDRYRRS
               70        80        90       100        110         

         120       130       140       150       160           
pF1KB3 PRRRSFSRSRSRSLSRDRRRERSLSRERNHKPSRSFSRSRSRSRSNERK       
        : ::. : :::: : :   .:: :  :: .:.    ::::.: ..          
NP_001 -RSRSYERRRSRSRSFDYNYRRSYS-PRNSRPTGRPRRSRSHSDNDSQVSKKKNER
      120       130       140        150       160       170   

>>NP_001287865 (OMIM: 605221) serine/arginine-rich splic  (172 aa)
 initn: 393 init1: 210 opt: 326  Z-score: 238.1  bits: 50.4 E(85289): 1.6e-06
Smith-Waterman score: 326; 36.3% identity (64.9% similar) in 171 aa overlap (1-164:1-169)

               10        20        30        40             50     
pF1KB3 MHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWV-----ARNPPGFAFVEFED
       : :   : . ...: :....  . .:.: :: :::. .:.:     .: : :::.:.:::
NP_001 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED
               10        20        30        40        50        60

          60        70        80        90       100       110     
pF1KB3 PRDAADAVRELDGRTLCGCRVRVELSNGEKRSRNRGPPPSWGRRPRDDYRRRSPPPRRRS
        ::: ::...:: . .:: ........:.... :.      ::   .. :  .    :::
NP_001 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKE-GRNVYSSSRYDDYDRYRRS
               70        80        90       100        110         

         120       130       140         150       160       
pF1KB3 PRRRSFSRSRSRSLSRDRRRERSLS-RER-NHKPSRSFSRSRSRSRSNERK   
        : ::. : :::: : :   .:: : :.: . .: :: :.: . :. ...:   
NP_001 -RSRSYERRRSRSRSFDYNYRRSYSPRNRPTGRPRRSRSHSDNDSQVSKKKNER
      120       130       140       150       160       170  




164 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 21:16:38 2016 done: Fri Nov  4 21:16:39 2016
 Total Scan time:  6.080 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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