Result of FASTA (omim) for pF1KB9562
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9562, 788 aa
  1>>>pF1KB9562 788 - 788 aa - 788 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.7333+/-0.000414; mu= 14.1249+/- 0.026
 mean_var=118.5522+/-24.262, 0's: 0 Z-trim(115.4): 7  B-trim: 1046 in 1/51
 Lambda= 0.117793
 statistics sampled from 25902 (25909) to 25902 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.666), E-opt: 0.2 (0.304), width:  16
 Scan time: 11.350

The best scores are:                                      opt bits E(85289)
NP_085133 (OMIM: 605752) protein HID1 [Homo sapien ( 788) 5289 910.6       0
XP_005257283 (OMIM: 605752) PREDICTED: protein HID ( 787) 5270 907.3       0


>>NP_085133 (OMIM: 605752) protein HID1 [Homo sapiens]    (788 aa)
 initn: 5289 init1: 5289 opt: 5289  Z-score: 4862.6  bits: 910.6 E(85289):    0
Smith-Waterman score: 5289; 100.0% identity (100.0% similar) in 788 aa overlap (1-788:1-788)

               10        20        30        40        50        60
pF1KB9 MGSTDSKLNFRKAVIQLTTKTQPVEATDDAFWDQFWADTATSVQDVFALVPAAEIRAVRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_085 MGSTDSKLNFRKAVIQLTTKTQPVEATDDAFWDQFWADTATSVQDVFALVPAAEIRAVRE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 ESPSNLATLCYKAVEKLVQGAESGCHSEKEKQIVLNCSRLLTRVLPYIFEDPDWRGFFWS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_085 ESPSNLATLCYKAVEKLVQGAESGCHSEKEKQIVLNCSRLLTRVLPYIFEDPDWRGFFWS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 TVPGAGRGGQGEEDDEHARPLAESLLLAIADLLFCPDFTVQSHRRSTVDSAEDVHSLDSC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_085 TVPGAGRGGQGEEDDEHARPLAESLLLAIADLLFCPDFTVQSHRRSTVDSAEDVHSLDSC
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 EYIWEAGVGFAHSPQPNYIHDMNRMELLKLLLTCFSEAMYLPPAPESGSTNPWVQFFCST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_085 EYIWEAGVGFAHSPQPNYIHDMNRMELLKLLLTCFSEAMYLPPAPESGSTNPWVQFFCST
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 ENRHALPLFTSLLNTVCAYDPVGYGIPYNHLLFSDYREPLVEEAAQVLIVTLDHDSASSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_085 ENRHALPLFTSLLNTVCAYDPVGYGIPYNHLLFSDYREPLVEEAAQVLIVTLDHDSASSA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 SPTVDGTTTGTAMDDADPPGPENLFVNYLSRIHREEDFQFILKGIARLLSNPLLQTYLPN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_085 SPTVDGTTTGTAMDDADPPGPENLFVNYLSRIHREEDFQFILKGIARLLSNPLLQTYLPN
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 STKKIQFHQELLVLFWKLCDFNKKFLFFVLKSSDVLDILVPILFFLNDARADQSRVGLMH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_085 STKKIQFHQELLVLFWKLCDFNKKFLFFVLKSSDVLDILVPILFFLNDARADQSRVGLMH
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB9 IGVFILLLLSGERNFGVRLNKPYSIRVPMDIPVFTGTHADLLIVVFHKIITSGHQRLQPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_085 IGVFILLLLSGERNFGVRLNKPYSIRVPMDIPVFTGTHADLLIVVFHKIITSGHQRLQPL
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB9 FDCLLTIVVNVSPYLKSLSMVTANKLLHLLEAFSTTWFLFSAAQNHHLVFFLLEVFNNII
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_085 FDCLLTIVVNVSPYLKSLSMVTANKLLHLLEAFSTTWFLFSAAQNHHLVFFLLEVFNNII
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB9 QYQFDGNSNLVYAIIRKRSIFHQLANLPTDPPTIHKALQRRRRTPEPLSRTGSQEGTSME
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_085 QYQFDGNSNLVYAIIRKRSIFHQLANLPTDPPTIHKALQRRRRTPEPLSRTGSQEGTSME
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB9 GSRPAAPAEPGTLKTSLVATPGIDKLTEKSQVSEDGTLRSLEPEPQQSLEDGSPAKGEPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_085 GSRPAAPAEPGTLKTSLVATPGIDKLTEKSQVSEDGTLRSLEPEPQQSLEDGSPAKGEPS
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB9 QAWREQRRPSTSSASGQWSPTPEWVLSWKSKLPLQTIMRLLQVLVPQVEKICIDKGLTDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_085 QAWREQRRPSTSSASGQWSPTPEWVLSWKSKLPLQTIMRLLQVLVPQVEKICIDKGLTDE
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KB9 SEILRFLQHGTLVGLLPVPHPILIRKYQANSGTAMWFRTYMWGVIYLRNVDPPVWYDTDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_085 SEILRFLQHGTLVGLLPVPHPILIRKYQANSGTAMWFRTYMWGVIYLRNVDPPVWYDTDV
              730       740       750       760       770       780

               
pF1KB9 KLFEIQRV
       ::::::::
NP_085 KLFEIQRV
               

>>XP_005257283 (OMIM: 605752) PREDICTED: protein HID1 is  (787 aa)
 initn: 4419 init1: 4419 opt: 5270  Z-score: 4845.2  bits: 907.3 E(85289):    0
Smith-Waterman score: 5270; 99.9% identity (99.9% similar) in 788 aa overlap (1-788:1-787)

               10        20        30        40        50        60
pF1KB9 MGSTDSKLNFRKAVIQLTTKTQPVEATDDAFWDQFWADTATSVQDVFALVPAAEIRAVRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MGSTDSKLNFRKAVIQLTTKTQPVEATDDAFWDQFWADTATSVQDVFALVPAAEIRAVRE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 ESPSNLATLCYKAVEKLVQGAESGCHSEKEKQIVLNCSRLLTRVLPYIFEDPDWRGFFWS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ESPSNLATLCYKAVEKLVQGAESGCHSEKEKQIVLNCSRLLTRVLPYIFEDPDWRGFFWS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 TVPGAGRGGQGEEDDEHARPLAESLLLAIADLLFCPDFTVQSHRRSTVDSAEDVHSLDSC
       ::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TVPGAGRGG-GEEDDEHARPLAESLLLAIADLLFCPDFTVQSHRRSTVDSAEDVHSLDSC
               130       140       150       160       170         

              190       200       210       220       230       240
pF1KB9 EYIWEAGVGFAHSPQPNYIHDMNRMELLKLLLTCFSEAMYLPPAPESGSTNPWVQFFCST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EYIWEAGVGFAHSPQPNYIHDMNRMELLKLLLTCFSEAMYLPPAPESGSTNPWVQFFCST
     180       190       200       210       220       230         

              250       260       270       280       290       300
pF1KB9 ENRHALPLFTSLLNTVCAYDPVGYGIPYNHLLFSDYREPLVEEAAQVLIVTLDHDSASSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ENRHALPLFTSLLNTVCAYDPVGYGIPYNHLLFSDYREPLVEEAAQVLIVTLDHDSASSA
     240       250       260       270       280       290         

              310       320       330       340       350       360
pF1KB9 SPTVDGTTTGTAMDDADPPGPENLFVNYLSRIHREEDFQFILKGIARLLSNPLLQTYLPN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SPTVDGTTTGTAMDDADPPGPENLFVNYLSRIHREEDFQFILKGIARLLSNPLLQTYLPN
     300       310       320       330       340       350         

              370       380       390       400       410       420
pF1KB9 STKKIQFHQELLVLFWKLCDFNKKFLFFVLKSSDVLDILVPILFFLNDARADQSRVGLMH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 STKKIQFHQELLVLFWKLCDFNKKFLFFVLKSSDVLDILVPILFFLNDARADQSRVGLMH
     360       370       380       390       400       410         

              430       440       450       460       470       480
pF1KB9 IGVFILLLLSGERNFGVRLNKPYSIRVPMDIPVFTGTHADLLIVVFHKIITSGHQRLQPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IGVFILLLLSGERNFGVRLNKPYSIRVPMDIPVFTGTHADLLIVVFHKIITSGHQRLQPL
     420       430       440       450       460       470         

              490       500       510       520       530       540
pF1KB9 FDCLLTIVVNVSPYLKSLSMVTANKLLHLLEAFSTTWFLFSAAQNHHLVFFLLEVFNNII
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FDCLLTIVVNVSPYLKSLSMVTANKLLHLLEAFSTTWFLFSAAQNHHLVFFLLEVFNNII
     480       490       500       510       520       530         

              550       560       570       580       590       600
pF1KB9 QYQFDGNSNLVYAIIRKRSIFHQLANLPTDPPTIHKALQRRRRTPEPLSRTGSQEGTSME
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QYQFDGNSNLVYAIIRKRSIFHQLANLPTDPPTIHKALQRRRRTPEPLSRTGSQEGTSME
     540       550       560       570       580       590         

              610       620       630       640       650       660
pF1KB9 GSRPAAPAEPGTLKTSLVATPGIDKLTEKSQVSEDGTLRSLEPEPQQSLEDGSPAKGEPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GSRPAAPAEPGTLKTSLVATPGIDKLTEKSQVSEDGTLRSLEPEPQQSLEDGSPAKGEPS
     600       610       620       630       640       650         

              670       680       690       700       710       720
pF1KB9 QAWREQRRPSTSSASGQWSPTPEWVLSWKSKLPLQTIMRLLQVLVPQVEKICIDKGLTDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QAWREQRRPSTSSASGQWSPTPEWVLSWKSKLPLQTIMRLLQVLVPQVEKICIDKGLTDE
     660       670       680       690       700       710         

              730       740       750       760       770       780
pF1KB9 SEILRFLQHGTLVGLLPVPHPILIRKYQANSGTAMWFRTYMWGVIYLRNVDPPVWYDTDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SEILRFLQHGTLVGLLPVPHPILIRKYQANSGTAMWFRTYMWGVIYLRNVDPPVWYDTDV
     720       730       740       750       760       770         

               
pF1KB9 KLFEIQRV
       ::::::::
XP_005 KLFEIQRV
     780       




788 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 23:27:54 2016 done: Fri Nov  4 23:27:56 2016
 Total Scan time: 11.350 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]
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