Result of FASTA (ccds) for pF1KB6826
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6826, 187 aa
  1>>>pF1KB6826 187 - 187 aa - 187 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7362+/-0.000806; mu= 10.7431+/- 0.048
 mean_var=65.1612+/-13.245, 0's: 0 Z-trim(106.4): 26  B-trim: 84 in 1/52
 Lambda= 0.158884
 statistics sampled from 8965 (8983) to 8965 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.66), E-opt: 0.2 (0.276), width:  16
 Scan time:  1.690

The best scores are:                                      opt bits E(32554)
CCDS6495.1 IFNB1 gene_id:3456|Hs108|chr9           ( 187) 1235 291.5   2e-79
CCDS34997.1 IFNE gene_id:338376|Hs108|chr9         ( 208)  380 95.6 2.2e-20
CCDS34996.1 IFNA16 gene_id:3449|Hs108|chr9         ( 189)  347 88.0 3.8e-18
CCDS6502.1 IFNA5 gene_id:3442|Hs108|chr9           ( 189)  346 87.8 4.4e-18
CCDS6501.1 IFNA14 gene_id:3448|Hs108|chr9          ( 189)  338 85.9 1.6e-17
CCDS6498.1 IFNA4 gene_id:3441|Hs108|chr9           ( 189)  335 85.2 2.5e-17
CCDS6496.1 IFNW1 gene_id:3467|Hs108|chr9           ( 195)  334 85.0 3.1e-17
CCDS6500.1 IFNA17 gene_id:3451|Hs108|chr9          ( 189)  331 84.3 4.8e-17
CCDS34995.1 IFNA7 gene_id:3444|Hs108|chr9          ( 189)  330 84.1 5.6e-17
CCDS6499.1 IFNA10 gene_id:3446|Hs108|chr9          ( 189)  325 82.9 1.2e-16
CCDS6506.1 IFNA2 gene_id:3440|Hs108|chr9           ( 188)  324 82.7 1.4e-16
CCDS6505.2 IFNA13 gene_id:3447|Hs108|chr9          ( 190)  312 80.0 9.8e-16
CCDS6497.1 IFNA21 gene_id:3452|Hs108|chr9          ( 189)  310 79.5 1.3e-15
CCDS6508.1 IFNA1 gene_id:3439|Hs108|chr9           ( 189)  310 79.5 1.3e-15
CCDS6504.1 IFNA6 gene_id:3443|Hs108|chr9           ( 189)  308 79.0 1.8e-15
CCDS6507.1 IFNA8 gene_id:3445|Hs108|chr9           ( 189)  291 75.1 2.7e-14


>>CCDS6495.1 IFNB1 gene_id:3456|Hs108|chr9                (187 aa)
 initn: 1235 init1: 1235 opt: 1235  Z-score: 1539.5  bits: 291.5 E(32554): 2e-79
Smith-Waterman score: 1235; 100.0% identity (100.0% similar) in 187 aa overlap (1-187:1-187)

               10        20        30        40        50        60
pF1KB6 MTNKCLLQIALLLCFSTTALSMSYNLLGFLQRSSNFQCQKLLWQLNGRLEYCLKDRMNFD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 MTNKCLLQIALLLCFSTTALSMSYNLLGFLQRSSNFQCQKLLWQLNGRLEYCLKDRMNFD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 IPEEIKQLQQFQKEDAALTIYEMLQNIFAIFRQDSSSTGWNETIVENLLANVYHQINHLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 IPEEIKQLQQFQKEDAALTIYEMLQNIFAIFRQDSSSTGWNETIVENLLANVYHQINHLK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 TVLEEKLEKEDFTRGKLMSSLHLKRYYGRILHYLKAKEYSHCAWTIVRVEILRNFYFINR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 TVLEEKLEKEDFTRGKLMSSLHLKRYYGRILHYLKAKEYSHCAWTIVRVEILRNFYFINR
              130       140       150       160       170       180

              
pF1KB6 LTGYLRN
       :::::::
CCDS64 LTGYLRN
              

>>CCDS34997.1 IFNE gene_id:338376|Hs108|chr9              (208 aa)
 initn: 370 init1: 320 opt: 380  Z-score: 479.6  bits: 95.6 E(32554): 2.2e-20
Smith-Waterman score: 380; 37.2% identity (68.3% similar) in 183 aa overlap (1-182:1-183)

               10        20        30        40         50         
pF1KB6 MTNKCLLQIALLLCFSTTALSMSYNLLGFLQRSSNFQCQKLLWQLNG-RLEYCLKDRMNF
       :  : ..  .:.:  ::: .:.. .:. : ::. : .  ::: .:.   .. ::  : ::
CCDS34 MIIKHFFGTVLVLLASTTIFSLDLKLIIFQQRQVNQESLKLLNKLQTLSIQQCLPHRKNF
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KB6 DIPEEIKQLQQFQKEDAALTIYEMLQNIFAIFRQDSSSTGWNETIVENLLANVYHQINHL
        .:..  . ::.::  .   ..::::.::..:: . :  ::.:. .:..: ....:...:
CCDS34 LLPQKSLSPQQYQKGHTLAILHEMLQQIFSLFRANISLDGWEENHTEKFLIQLHQQLEYL
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KB6 KTVLEEKLEKEDFTRGKLMSSLHLKRYYGRILHYLKAKEYSHCAWTIVRVEILRNFYFIN
       ....  . :: . : :.    :..: :. ::  ::. ..:: :::.::.::: : ..:. 
CCDS34 EALMGLEAEKLSGTLGSDNLRLQVKMYFRRIHDYLENQDYSTCAWAIVQVEISRCLFFVF
              130       140       150       160       170       180

     180                           
pF1KB6 RLTGYLRN                    
        ::                         
CCDS34 SLTEKLSKQGRPLNDMKQELTTEFRSPR
              190       200        

>>CCDS34996.1 IFNA16 gene_id:3449|Hs108|chr9              (189 aa)
 initn: 338 init1: 338 opt: 347  Z-score: 439.4  bits: 88.0 E(32554): 3.8e-18
Smith-Waterman score: 347; 37.2% identity (72.3% similar) in 148 aa overlap (41-186:40-186)

               20        30        40        50          60        
pF1KB6 LLLCFSTTALSMSYNLLGFLQRSSNFQCQKLLWQLNGRLEY--CLKDRMNFDIPEEIKQL
                                     :: :. ::. .  :::::..: .:.:. . 
CCDS34 AVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQM-GRISHFSCLKDRYDFGFPQEVFDG
      10        20        30        40         50        60        

       70        80        90       100       110       120        
pF1KB6 QQFQKEDAALTIYEMLQNIFAIFRQDSSSTGWNETIVENLLANVYHQINHLKTVLEEKLE
       .:::: .:  ...::.:. : .:   .::..:.::.....  ....:.: :.. . ... 
CCDS34 NQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLEACVTQEVG
       70        80        90       100       110       120        

      130       140       150       160       170       180        
pF1KB6 KEDFTRGKLMSSLHLKRYYGRILHYLKAKEYSHCAWTIVRVEILRNFYFINRLTGYLRN 
        :...  .  : : ...:. ::  :: .:.:: ::: .::.::.:.: : . :   ::  
CCDS34 VEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTNLQKGLRRK
      130       140       150       160       170       180        

CCDS34 D
        

>>CCDS6502.1 IFNA5 gene_id:3442|Hs108|chr9                (189 aa)
 initn: 335 init1: 335 opt: 346  Z-score: 438.1  bits: 87.8 E(32554): 4.4e-18
Smith-Waterman score: 346; 33.9% identity (64.5% similar) in 183 aa overlap (6-186:8-186)

                 10        20        30        40        50        
pF1KB6   MTNKCLLQIALLLCFSTTALSMSYNLLGFLQRSSNFQCQKLLWQLNGRLE--YCLKDR
              :. ...: : :  .:. .   :   .  :: .   .. :. ::.    :::::
CCDS65 MALPFVLLMALVVLNCKSICSLGCD---LPQTHSLSNRRTLMIMAQM-GRISPFSCLKDR
               10        20           30        40         50      

         60        70        80        90       100       110      
pF1KB6 MNFDIPEEIKQLQQFQKEDAALTIYEMLQNIFAIFRQDSSSTGWNETIVENLLANVYHQI
        .: .:.:  . .:::: .:  ...::.:. : .:   .::. :.::..... ...:.:.
CCDS65 HDFGFPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQL
         60        70        80        90       100       110      

        120       130       140       150       160       170      
pF1KB6 NHLKTVLEEKLEKEDFTRGKLMSSLHLKRYYGRILHYLKAKEYSHCAWTIVRVEILRNFY
       : :.. . ...  ::    .. : : ...:. ::  ::  :.:: ::: .::.::.:.: 
CCDS65 NDLEACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFS
        120       130       140       150       160       170      

        180         
pF1KB6 FINRLTGYLRN  
       .   :   ::   
CCDS65 LSANLQERLRRKE
        180         

>>CCDS6501.1 IFNA14 gene_id:3448|Hs108|chr9               (189 aa)
 initn: 331 init1: 331 opt: 338  Z-score: 428.2  bits: 85.9 E(32554): 1.6e-17
Smith-Waterman score: 338; 32.4% identity (65.4% similar) in 182 aa overlap (6-186:8-186)

                 10        20        30        40        50        
pF1KB6   MTNKCLLQIALLLCFSTTALSMSYNLLGFLQRSSNFQCQKLLWQLNGRLEY-CLKDRM
              .. ...: : :. .:. .   :.  .  .: .   :. :.     . ::::: 
CCDS65 MALPFALMMALVVLSCKSSCSLGCN---LSQTHSLNNRRTLMLMAQMRRISPFSCLKDRH
               10        20           30        40        50       

        60        70        80        90       100       110       
pF1KB6 NFDIPEEIKQLQQFQKEDAALTIYEMLQNIFAIFRQDSSSTGWNETIVENLLANVYHQIN
       .:..:.:  . .:::: .:  ...::.:. : .:   .::..:.::..:..  ....:.:
CCDS65 DFEFPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMN
        60        70        80        90       100       110       

       120       130       140       150       160       170       
pF1KB6 HLKTVLEEKLEKEDFTRGKLMSSLHLKRYYGRILHYLKAKEYSHCAWTIVRVEILRNFYF
        :.. . ...  :.    .  : : .:.:. ::  ::  :.:: ::: .::.::.:.. :
CCDS65 DLEACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSF
       120       130       140       150       160       170       

       180         
pF1KB6 INRLTGYLRN  
        . :   ::   
CCDS65 STNLQKRLRRKD
       180         

>>CCDS6498.1 IFNA4 gene_id:3441|Hs108|chr9                (189 aa)
 initn: 326 init1: 326 opt: 335  Z-score: 424.5  bits: 85.2 E(32554): 2.5e-17
Smith-Waterman score: 335; 37.2% identity (70.3% similar) in 148 aa overlap (41-186:40-186)

               20        30        40        50          60        
pF1KB6 LLLCFSTTALSMSYNLLGFLQRSSNFQCQKLLWQLNGRLEY--CLKDRMNFDIPEEIKQL
                                     :: :. ::. .  ::::: .: .:::  . 
CCDS64 AVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQM-GRISHFSCLKDRHDFGFPEEEFDG
      10        20        30        40         50        60        

       70        80        90       100       110       120        
pF1KB6 QQFQKEDAALTIYEMLQNIFAIFRQDSSSTGWNETIVENLLANVYHQINHLKTVLEEKLE
       .:::: .:  ...::.:. : .:  ..::..:.....:.. ...:.:.: :.. . ... 
CCDS64 HQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLEACVIQEVG
       70        80        90       100       110       120        

      130       140       150       160       170       180        
pF1KB6 KEDFTRGKLMSSLHLKRYYGRILHYLKAKEYSHCAWTIVRVEILRNFYFINRLTGYLRN 
        :.    .  : : ...:. ::  ::  :.:: ::: .::.::.:.. : . :   ::  
CCDS64 VEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTNLQKRLRRK
      130       140       150       160       170       180        

CCDS64 D
        

>>CCDS6496.1 IFNW1 gene_id:3467|Hs108|chr9                (195 aa)
 initn: 351 init1: 328 opt: 334  Z-score: 423.0  bits: 85.0 E(32554): 3.1e-17
Smith-Waterman score: 334; 38.0% identity (73.7% similar) in 137 aa overlap (52-187:52-187)

              30        40        50        60        70        80 
pF1KB6 MSYNLLGFLQRSSNFQCQKLLWQLNGRLEYCLKDRMNFDIPEEIKQLQQFQKEDAALTIY
                                     ::::: .: .:.:. . .:.::  .  ...
CCDS64 LGCDLPQNHGLLSRNTLVLLHQMRRISPFLCLKDRRDFRFPQEMVKGSQLQKAHVMSVLH
              30        40        50        60        70        80 

              90       100       110       120       130        140
pF1KB6 EMLQNIFAIFRQDSSSTGWNETIVENLLANVYHQINHLKTVLEEKLEKEDFTRGKLMS-S
       ::::.::..:. . ::..:: :....: .....:..::.: : . .  :  . : . : .
CCDS64 EMLQQIFSLFHTERSSAAWNMTLLDQLHTGLHQQLQHLETCLLQVV-GEGESAGAISSPA
              90       100       110       120        130       140

              150       160       170       180               
pF1KB6 LHLKRYYGRILHYLKAKEYSHCAWTIVRVEILRNFYFINRLTGYLRN        
       : :.::.  :  ::: :.:: ::: .::.::...... . .   ::.        
CCDS64 LTLRRYFQGIRVYLKEKKYSDCAWEVVRMEIMKSLFLSTNMQERLRSKDRDLGSS
              150       160       170       180       190     

>>CCDS6500.1 IFNA17 gene_id:3451|Hs108|chr9               (189 aa)
 initn: 326 init1: 326 opt: 331  Z-score: 419.5  bits: 84.3 E(32554): 4.8e-17
Smith-Waterman score: 331; 36.5% identity (70.3% similar) in 148 aa overlap (41-186:40-186)

               20        30        40        50          60        
pF1KB6 LLLCFSTTALSMSYNLLGFLQRSSNFQCQKLLWQLNGRLE--YCLKDRMNFDIPEEIKQL
                                     :: :. ::.    ::::: .: .:.:  . 
CCDS65 AVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQM-GRISPFSCLKDRHDFGLPQEEFDG
      10        20        30        40         50        60        

       70        80        90       100       110       120        
pF1KB6 QQFQKEDAALTIYEMLQNIFAIFRQDSSSTGWNETIVENLLANVYHQINHLKTVLEEKLE
       .:::: .:  ...::.:. : .:  ..::..:.....:.. ...:.:.:.:.. . ... 
CCDS65 NQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLEACVIQEVG
       70        80        90       100       110       120        

      130       140       150       160       170       180        
pF1KB6 KEDFTRGKLMSSLHLKRYYGRILHYLKAKEYSHCAWTIVRVEILRNFYFINRLTGYLRN 
        :.    .  : : ...:. ::  ::  :.:: ::: .::.::.:.. : . :   ::  
CCDS65 MEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTNLQKILRRK
      130       140       150       160       170       180        

CCDS65 D
        

>>CCDS34995.1 IFNA7 gene_id:3444|Hs108|chr9               (189 aa)
 initn: 319 init1: 319 opt: 330  Z-score: 418.3  bits: 84.1 E(32554): 5.6e-17
Smith-Waterman score: 330; 35.3% identity (63.7% similar) in 190 aa overlap (6-186:7-186)

                10        20        30        40        50         
pF1KB6  MTNKCLLQIALLLCFSTTALSMSYNLLGFLQRSSNFQCQKLLWQLNGRLE--YCLKDRM
             ::...:.: ...   :.. .:    .   : .   :: :. ::.    ::::: 
CCDS34 MARSFSLLMVVLVLSYKSIC-SLGCDL-PQTHSLRNRRALILLAQM-GRISPFSCLKDRH
               10        20          30        40         50       

        60        70        80        90       100       110       
pF1KB6 NFDIPEEIKQLQQFQKEDAALTIYEMLQNIFAIFRQDSSSTGWNETIVENLLANVYHQIN
       .: .:::  . .:::: .:  ...::.:. : .:  ..::..:.....:.. ...:.:.:
CCDS34 EFRFPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLN
        60        70        80        90       100       110       

       120              130       140       150       160       170
pF1KB6 HLKT-------VLEEKLEKEDFTRGKLMSSLHLKRYYGRILHYLKAKEYSHCAWTIVRVE
        :..       : :  : .:::        : ...:. ::  ::  :.:: ::: .::.:
CCDS34 DLEACVIQEVGVEETPLMNEDFI-------LAVRKYFQRITLYLMEKKYSPCAWEVVRAE
       120       130       140              150       160       170

              180         
pF1KB6 ILRNFYFINRLTGYLRN  
       :.:.: : . :   ::   
CCDS34 IMRSFSFSTNLKKGLRRKD
              180         

>>CCDS6499.1 IFNA10 gene_id:3446|Hs108|chr9               (189 aa)
 initn: 320 init1: 320 opt: 325  Z-score: 412.1  bits: 82.9 E(32554): 1.2e-16
Smith-Waterman score: 325; 36.5% identity (69.6% similar) in 148 aa overlap (41-186:40-186)

               20        30        40        50          60        
pF1KB6 LLLCFSTTALSMSYNLLGFLQRSSNFQCQKLLWQLNGRLE--YCLKDRMNFDIPEEIKQL
                                     :: :. ::.    ::::: .: ::.:  . 
CCDS64 AVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQM-GRISPFSCLKDRHDFRIPQEEFDG
      10        20        30        40         50        60        

       70        80        90       100       110       120        
pF1KB6 QQFQKEDAALTIYEMLQNIFAIFRQDSSSTGWNETIVENLLANVYHQINHLKTVLEEKLE
       .:::: .:  ...::.:. : .:  ..::..:.....:.. ...:.:.: :.. . ... 
CCDS64 NQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLEACVIQEVG
       70        80        90       100       110       120        

      130       140       150       160       170       180        
pF1KB6 KEDFTRGKLMSSLHLKRYYGRILHYLKAKEYSHCAWTIVRVEILRNFYFINRLTGYLRN 
        :.    .  : : ...:. ::  ::  ..:: ::: .::.::.:.. : . :   ::  
CCDS64 VEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTNLQKRLRRK
      130       140       150       160       170       180        

CCDS64 D
        




187 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 20:27:19 2016 done: Sat Nov  5 20:27:19 2016
 Total Scan time:  1.690 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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