Result of FASTA (omim) for pF1KB7591
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7591, 226 aa
  1>>>pF1KB7591 226 - 226 aa - 226 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.6821+/-0.000314; mu= 8.2913+/- 0.020
 mean_var=279.1817+/-57.285, 0's: 0 Z-trim(125.8): 197  B-trim: 1696 in 2/58
 Lambda= 0.076759
 statistics sampled from 49880 (50194) to 49880 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.853), E-opt: 0.2 (0.589), width:  16
 Scan time:  8.140

The best scores are:                                      opt bits E(85289)
NP_006252 (OMIM: 262600,601538) homeobox protein p ( 226) 1608 189.8 3.2e-48
NP_038463 (OMIM: 601881,611038) retinal homeobox p ( 346)  374 53.4 5.7e-07
NP_703149 (OMIM: 300154) homeobox protein ESX1 [Ho ( 406)  331 48.7 1.7e-05
NP_001306003 (OMIM: 605726,610362,610381,613757) r ( 230)  326 47.8 1.8e-05
NP_115485 (OMIM: 604529) homeobox protein orthoped ( 325)  323 47.7 2.8e-05
XP_016870292 (OMIM: 604675) PREDICTED: paired meso ( 193)  309 45.8 5.9e-05
NP_116142 (OMIM: 605726,610362,610381,613757) reti ( 184)  307 45.6 6.7e-05
NP_005160 (OMIM: 602078,602753) paired mesoderm ho ( 284)  307 45.8 8.7e-05
NP_057391 (OMIM: 604675) paired mesoderm homeobox  ( 253)  302 45.2 0.00012
XP_011537084 (OMIM: 601527,613456) PREDICTED: ALX  ( 231)  296 44.5 0.00018
NP_001297089 (OMIM: 106210,120430,136520,148190,16 ( 286)  297 44.7 0.00019
NP_001297090 (OMIM: 106210,120430,136520,148190,16 ( 286)  297 44.7 0.00019
NP_114150 (OMIM: 609852) homeobox protein MIXL1 is ( 232)  294 44.3 0.00021
NP_006483 (OMIM: 136760,606014) homeobox protein a ( 343)  297 44.8 0.00021
NP_008913 (OMIM: 601527,613456) ALX homeobox prote ( 326)  296 44.7 0.00022
NP_001245394 (OMIM: 106210,120430,136520,148190,16 ( 422)  297 45.0 0.00024
NP_001245393 (OMIM: 106210,120430,136520,148190,16 ( 422)  297 45.0 0.00024
NP_000271 (OMIM: 106210,120430,136520,148190,16555 ( 422)  297 45.0 0.00024
NP_001121084 (OMIM: 106210,120430,136520,148190,16 ( 422)  297 45.0 0.00024
NP_001245391 (OMIM: 106210,120430,136520,148190,16 ( 436)  297 45.0 0.00024
NP_001245392 (OMIM: 106210,120430,136520,148190,16 ( 436)  297 45.0 0.00024
NP_001297087 (OMIM: 106210,120430,136520,148190,16 ( 436)  297 45.0 0.00024
NP_001595 (OMIM: 106210,120430,136520,148190,16555 ( 436)  297 45.0 0.00024
NP_620689 (OMIM: 300004,300215,300382,300419,30835 ( 562)  296 45.0  0.0003
NP_001290437 (OMIM: 612019) intestine-specific hom ( 245)  289 43.8 0.00032
NP_006875 (OMIM: 602504) short stature homeobox pr ( 331)  291 44.2 0.00032
NP_000545 (OMIM: 120970,268000,602225,613829) cone ( 299)  289 43.9 0.00036
NP_003915 (OMIM: 209880,603851,613013) paired meso ( 314)  289 43.9 0.00037
NP_068745 (OMIM: 605420,609597,613451,615529) home ( 411)  291 44.3 0.00037
NP_003021 (OMIM: 602504) short stature homeobox pr ( 355)  288 43.9 0.00043
XP_006711451 (OMIM: 167420,202650) PREDICTED: pair ( 198)  278 42.4 0.00065
NP_008833 (OMIM: 167420,202650) paired mesoderm ho ( 217)  278 42.5 0.00069
NP_073207 (OMIM: 167420,202650) paired mesoderm ho ( 245)  278 42.5 0.00074
XP_016883326 (OMIM: 122000,148300,605020,614195) P ( 280)  278 42.6  0.0008
NP_001128726 (OMIM: 167410,268220) paired box prot ( 505)  282 43.4 0.00083
NP_001243201 (OMIM: 122000,148300,605020,614195) v ( 301)  278 42.7 0.00083
NP_039236 (OMIM: 167410,268220) paired box protein ( 518)  282 43.4 0.00084
NP_002575 (OMIM: 167410,268220) paired box protein ( 520)  282 43.4 0.00085
NP_005020 (OMIM: 107250,602669,610623) pituitary h ( 302)  277 42.6  0.0009
NP_055403 (OMIM: 122000,148300,605020,614195) visu ( 365)  278 42.8 0.00093
NP_001297088 (OMIM: 106210,120430,136520,148190,16 ( 401)  276 42.6  0.0011
NP_878314 (OMIM: 142993,610092,610093) visual syst ( 361)  273 42.2  0.0014
NP_852126 (OMIM: 122880,148820,193500,268220,60659 ( 403)  273 42.3  0.0015
NP_852125 (OMIM: 122880,148820,193500,268220,60659 ( 407)  273 42.3  0.0015
NP_852122 (OMIM: 122880,148820,193500,268220,60659 ( 479)  273 42.4  0.0016
NP_001120838 (OMIM: 122880,148820,193500,268220,60 ( 483)  273 42.4  0.0016
NP_852123 (OMIM: 122880,148820,193500,268220,60659 ( 484)  273 42.4  0.0016
NP_852124 (OMIM: 122880,148820,193500,268220,60659 ( 505)  273 42.4  0.0017
NP_001263380 (OMIM: 606701) dorsal root ganglia ho ( 263)  267 41.4  0.0018
NP_006184 (OMIM: 125853,167413,612225,612227) pair ( 343)  268 41.6  0.0019


>>NP_006252 (OMIM: 262600,601538) homeobox protein proph  (226 aa)
 initn: 1608 init1: 1608 opt: 1608  Z-score: 986.6  bits: 189.8 E(85289): 3.2e-48
Smith-Waterman score: 1608; 99.6% identity (100.0% similar) in 226 aa overlap (1-226:1-226)

               10        20        30        40        50        60
pF1KB7 MEAERRRQAEKPKKGRVGSSLLPERHPATGTPTTTVDSSAPPCRRLPGAGGGRSRFSPQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MEAERRRQAEKPKKGRVGSSLLPERHPATGTPTTTVDSSAPPCRRLPGAGGGRSRFSPQG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 GQRGRPHSRRRHRTTFSPVQLEQLESAFGRNQYPDIWARESLARDTGLSEARIQVWFQNR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 GQRGRPHSRRRHRTTFSPVQLEQLESAFGRNQYPDIWARESLARDTGLSEARIQVWFQNR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 RAKQRKQERSLLQPLAHLSPATFSSFLPESTACPYSYAAPPPPVTCFPHPYSHALPSQPS
       :::::::::::::::::::::.::::::::::::::::::::::::::::::::::::::
NP_006 RAKQRKQERSLLQPLAHLSPAAFSSFLPESTACPYSYAAPPPPVTCFPHPYSHALPSQPS
              130       140       150       160       170       180

              190       200       210       220      
pF1KB7 TGGAFALSHQSEDWYPTLHPAPAGHLPCPPPPPMLPLSLEPSKSWN
       ::::::::::::::::::::::::::::::::::::::::::::::
NP_006 TGGAFALSHQSEDWYPTLHPAPAGHLPCPPPPPMLPLSLEPSKSWN
              190       200       210       220      

>>NP_038463 (OMIM: 601881,611038) retinal homeobox prote  (346 aa)
 initn: 380 init1: 250 opt: 374  Z-score: 246.1  bits: 53.4 E(85289): 5.7e-07
Smith-Waterman score: 375; 37.0% identity (56.0% similar) in 243 aa overlap (2-221:62-295)

                                            10          20         
pF1KB7                              MEAERRRQAEK--PKKGRVGSSLLPERHPAT
                                     : .::  :.   ::  . ::   :   :: 
NP_038 LHSIEAILGFTKDDGILGTFPAERGARGAKERDRRLGARPACPKAPEEGSEPSPPPAPA-
              40        50        60        70        80        90 

      30        40        50        60                 70        80
pF1KB7 GTPTTTVDSSAPPCRRLPGAGGGRSRFSPQGGQRG--------RPHSR-RRHRTTFSPVQ
         :.   ..  : : . :: .     . : :   :        .:... ::.::::.  :
NP_038 --PAPEYEAPRPYCPKEPGEARPSPGL-PVGPATGEAKLSEEEQPKKKHRRNRTTFTTYQ
                100       110        120       130       140       

               90       100       110       120       130          
pF1KB7 LEQLESAFGRNQYPDIWARESLARDTGLSEARIQVWFQNRRAKQRKQERSLLQPLA-HLS
       :..:: :: ...:::...:: ::  ..: :.:.:::::::::: :.::.  .. .  . :
NP_038 LHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWRRQEKLEVSSMKLQDS
       150       160       170       180       190       200       

     140        150       160           170       180       190    
pF1KB7 PA-TFSSFLPESTACPYSYAAPP----PPVTCFPHPYSHALPSQPSTGGAFALSHQSEDW
       :  .::   : .:  : . :.:     :    .:   :   :  :. ::: ::  ::   
NP_038 PLLSFSRSPPSATLSPLG-AGPGSGGGPAGGALPLE-SWLGPPLPG-GGATAL--QSLPG
       210       220        230       240        250          260  

           200       210            220                            
pF1KB7 Y-PTLHPAPAGHLPCPPPPPML---PLS--LEPSKSWN                      
       . :  .  ::.. : :::::.:   ::.  :.:                           
NP_038 FGPPAQSLPASYTPPPPPPPFLNSPPLGPGLQPLAPPPPSYPCGPGFGDKFPLDEADPRN
            270       280       290       300       310       320  

NP_038 SSIAALRLKAKEHIQAIGKPWQAL
            330       340      

>>NP_703149 (OMIM: 300154) homeobox protein ESX1 [Homo s  (406 aa)
 initn: 291 init1: 239 opt: 331  Z-score: 219.7  bits: 48.7 E(85289): 1.7e-05
Smith-Waterman score: 347; 32.3% identity (52.4% similar) in 229 aa overlap (11-225:93-306)

                                   10        20        30        40
pF1KB7                     MEAERRRQAEKPKKGRVGSSLLPERHPATGTPTTTVDSSA
                                     ::.. .    ::  ..     : :::..  
NP_703 TEGSVPSDDQDREGGGGHEPEQQQEEPPLTKPEQQQEEPPLLELKQEQEEPPQTTVEGPQ
             70        80        90       100       110       120  

               50        60        70        80        90       100
pF1KB7 PPCRRLPGAGGGRSRFSPQGGQRGRPHSRRRHRTTFSPVQLEQLESAFGRNQYPDIWARE
       :       : : ..  .::      :. .::.::.:.  ::..::. : ..::::. :::
NP_703 P-------AEGPQTAEGPQP-----PERKRRRRTAFTQFQLQELENFFDESQYPDVVARE
                   130            140       150       160       170

              110       120       130       140       150       160
pF1KB7 SLARDTGLSEARIQVWFQNRRAKQRKQERSLLQPLAHLSPATFSSFLPESTACPYSYAAP
        ::   .:.: :.:::::::::: ....: :.  : . . : ..  :    .  : ::::
NP_703 RLAARLNLTEDRVQVWFQNRRAKWKRNQRVLM--LRNTATADLAHPLDMFLGGAY-YAAP
              180       190       200         210       220        

                     170       180       190        200         210
pF1KB7 P-PPVTC------FPHPYSHALPSQPSTGGAFALSHQSE-DWYPTLHPAPAGH--LPCPP
          :. :      .:.:    .: .:       .  .     .: . :.: :    : ::
NP_703 ALDPALCVHLVPQLPRPPVLPVPPMPPRPPMVPMPPRPPIAPMPPMAPVPPGSRMAPVPP
       230       240       250       260       270       280       

                  220                                              
pF1KB7 PPPMLPLS----LEPSKSWN                                        
        : : :.     . :   :                                         
NP_703 GPRMAPVPPWPPMAPVPPWPPMAPVPTGPPMAPVPPGPPMARVPPGPPMARVPPGPPMAP
       290       300       310       320       330       340       

>>NP_001306003 (OMIM: 605726,610362,610381,613757) retin  (230 aa)
 initn: 297 init1: 265 opt: 326  Z-score: 219.3  bits: 47.8 E(85289): 1.8e-05
Smith-Waterman score: 326; 38.9% identity (57.2% similar) in 180 aa overlap (12-183:11-183)

               10          20          30        40         50     
pF1KB7 MEAERRRQAEKPKKGRV--GSSLL--PERHPATGTPTTTVDSSAPPCRRL-PGAGGGRSR
                  :  ::   ::  :  :   ::.. :.. . :       : :: : .   
NP_001  MPAPVEGTDFPGAGRQAWGSPALSLPVAPPAVSPPSVPLPSHQVGAMFLSPGEGPATEG
                10        20        30        40        50         

          60        70        80        90       100       110     
pF1KB7 FSPQGGQRGRPHSRRRHRTTFSPVQLEQLESAFGRNQYPDIWARESLARDTGLSEARIQV
        .   :...  ...::.::::.  ::.::: ::  ..:::...:: ::  . : :.:.::
NP_001 GGLGPGEEAPKKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQV
      60        70        80        90       100       110         

         120       130       140       150       160          170  
pF1KB7 WFQNRRAKQRKQERSLLQPLAHLSPATFSSFLPESTACPYSYAAPPP---PVTCFPHPYS
       :::::::: :.:::     :   : :. .  :::. : :.  : ::    :.  .  :  
NP_001 WFQNRRAKWRRQER-----LESGSGAVAAPRLPEAPALPF--ARPPAMSLPLEPWLGPGP
     120       130            140       150         160       170  

            180       190       200       210       220          
pF1KB7 HALPSQPSTGGAFALSHQSEDWYPTLHPAPAGHLPCPPPPPMLPLSLEPSKSWN    
        :.:. :   :                                               
NP_001 PAVPGLPRLLGPGPGLQASFGPHAFAPTFADGFALEEASLRLLAKEHAQALDRAWPPA
            180       190       200       210       220       230

>>NP_115485 (OMIM: 604529) homeobox protein orthopedia [  (325 aa)
 initn: 361 init1: 276 opt: 323  Z-score: 215.9  bits: 47.7 E(85289): 2.8e-05
Smith-Waterman score: 330; 33.7% identity (60.2% similar) in 196 aa overlap (18-210:54-224)

                            10        20          30        40     
pF1KB7              MEAERRRQAEKPKKGRVGSSLLPERHPAT--GTPTTTVDSSAPPCRR
                                     :..::: .  .:  .::.. . :.  : ..
NP_115 REAVKCRLGVGGSDPGGHPGDLAPNSDPVEGATLLPGEDITTVGSTPASLAVSAKDPDKQ
            30        40        50        60        70        80   

          50        60        70        80        90       100     
pF1KB7 LPGAGGGRSRFSPQGGQRGRPHSRRRHRTTFSPVQLEQLESAFGRNQYPDIWARESLARD
        ::  :: .    :.::.   ....:::: :.:.::..:: .:....::::. :: ::  
NP_115 -PGPQGGPN--PSQAGQQQGQQKQKRHRTRFTPAQLNELERSFAKTHYPDIFMREELALR
             90         100       110       120       130       140

         110       120       130       140       150       160     
pF1KB7 TGLSEARIQVWFQNRRAKQRKQERSLLQPLAHLSPATFSSFLPESTACPYSYAAPPPPVT
        ::.:.:.:::::::::: .:....     .  .:.:.                : : . 
NP_115 IGLTESRVQVWFQNRRAKWKKRKKTT---NVFRAPGTL---------------LPTPGLP
              150       160          170                      180  

         170       180       190        200       210       220    
pF1KB7 CFPHPYSHALPSQPSTGGAFALSHQSED-WYPTLHPAPAGHLPCPPPPPMLPLSLEPSKS
        ::   : :  .  . : ..   : ..  :  .  :. ...:: ::              
NP_115 QFP---SAAAAAAAAMGDSLCSFHANDTRWAAAAMPG-VSQLPLPPALGRQQAMAQSLSQ
               190       200       210        220       230        

                                                                   
pF1KB7 WN                                                          
                                                                   
NP_115 CSLAAGPPPNSMGLSNSLAGSNGAGLQSHLYQPAFPGMVPASLPGPSNVSGSPQLCSSPD
      240       250       260       270       280       290        

>>XP_016870292 (OMIM: 604675) PREDICTED: paired mesoderm  (193 aa)
 initn: 340 init1: 261 opt: 309  Z-score: 209.9  bits: 45.8 E(85289): 5.9e-05
Smith-Waterman score: 309; 40.4% identity (65.2% similar) in 141 aa overlap (48-183:23-160)

        20        30        40        50        60        70       
pF1KB7 GSSLLPERHPATGTPTTTVDSSAPPCRRLPGAGGGRSRFSPQGGQRGRPHSRRRHRTTFS
                                     : : :.     .:.   : ...::.::::.
XP_016         MGPLHRETGPERSGHRLKVTELGCGEGECPSPGRGSAAKRKKKQRRNRTTFN
                       10        20        30        40        50  

        80        90       100       110       120       130       
pF1KB7 PVQLEQLESAFGRNQYPDIWARESLARDTGLSEARIQVWFQNRRAKQRKQERSLLQPLAH
         ::. :: .: :..::: ..:: ::: ..:::::.:::::::::: :..::..:   : 
XP_016 SSQLQALERVFERTHYPDAFVREELARRVNLSEARVQVWFQNRRAKFRRNERAML---AS
             60        70        80        90       100            

       140       150           160        170       180       190  
pF1KB7 LSPATFSSFLPEST----ACPYSYAAPPPPVT-CFPHPYSHALPSQPSTGGAFALSHQSE
        : . ..:.  :..    . :   :  :  ..     ::: . : .:...:         
XP_016 RSASLLKSYSQEAAIEQPVAPRPTALSPDYLSWTASSPYSTVPPYSPGSSGPATPGVNMA
     110       120       130       140       150       160         

            200       210       220      
pF1KB7 DWYPTLHPAPAGHLPCPPPPPMLPLSLEPSKSWN
                                         
XP_016 NSIASLRLKAKEFSLHHSQVPTVN          
     170       180       190             

>>NP_116142 (OMIM: 605726,610362,610381,613757) retina a  (184 aa)
 initn: 313 init1: 265 opt: 307  Z-score: 208.9  bits: 45.6 E(85289): 6.7e-05
Smith-Waterman score: 307; 41.4% identity (61.4% similar) in 140 aa overlap (47-183:5-137)

         20        30        40        50        60        70      
pF1KB7 VGSSLLPERHPATGTPTTTVDSSAPPCRRLPGAGGGRSRFSPQGGQRGRPHSRRRHRTTF
                                     :: : .    .   :...  ...::.::::
NP_116                           MFLSPGEGPATEGGGLGPGEEAPKKKHRRNRTTF
                                         10        20        30    

         80        90       100       110       120       130      
pF1KB7 SPVQLEQLESAFGRNQYPDIWARESLARDTGLSEARIQVWFQNRRAKQRKQERSLLQPLA
       .  ::.::: ::  ..:::...:: ::  . : :.:.:::::::::: :.:::     : 
NP_116 TTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQVWFQNRRAKWRRQER-----LE
           40        50        60        70        80              

        140       150       160          170       180       190   
pF1KB7 HLSPATFSSFLPESTACPYSYAAPPP---PVTCFPHPYSHALPSQPSTGGAFALSHQSED
         : :. .  :::. : :  .: ::    :.  .  :   :.:. :   :          
NP_116 SGSGAVAAPRLPEAPALP--FARPPAMSLPLEPWLGPGPPAVPGLPRLLGPGPGLQASFG
      90       100         110       120       130       140       

           200       210       220          
pF1KB7 WYPTLHPAPAGHLPCPPPPPMLPLSLEPSKSWN    
                                            
NP_116 PHAFAPTFADGFALEEASLRLLAKEHAQALDRAWPPA
       150       160       170       180    

>>NP_005160 (OMIM: 602078,602753) paired mesoderm homeob  (284 aa)
 initn: 296 init1: 252 opt: 307  Z-score: 206.9  bits: 45.8 E(85289): 8.7e-05
Smith-Waterman score: 318; 37.1% identity (55.1% similar) in 205 aa overlap (19-217:36-227)

                           10        20        30        40        
pF1KB7             MEAERRRQAEKPKKGRVGSSLLPERHPATGTPTTTVDSSAPPCRRL--
                                     : : :   ::.: :  .. ::      :  
NP_005 LNSYDSCVAAMEASAYGDFGACSQPGGFQYSPLRPA-FPAAGPPCPALGSSNCALGALRD
          10        20        30        40         50        60    

           50         60        70        80        90       100   
pF1KB7 --PGAGGGRS-RFSPQGGQRGRPHSRRRHRTTFSPVQLEQLESAFGRNQYPDIWARESLA
         :.  ..   .: :. .   . ...:: ::::. .::..:: .:....::::..:: ::
NP_005 HQPAPYSAVPYKFFPEPSGLHEKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELA
           70        80        90       100       110       120    

           110       120       130       140       150       160   
pF1KB7 RDTGLSEARIQVWFQNRRAKQRKQERSLLQPLAHLSPATFSSFLPESTACPYSYAAPPPP
           :.:::.:::::::::: :::::.     :  . :. ..   .. :   :       
NP_005 LKIDLTEARVQVWFQNRRAKFRKQERA-----ASAKGAAGAAGAKKGEARCSSEDDDSKE
          130       140       150            160       170         

           170        180       190       200       210       220  
pF1KB7 VTCFPHPYSHA-LPSQPSTGGAFALSHQSEDWYPTLHPAPAGHLPCPPPPPMLPLSLEPS
        :: : : : : ::  :. : :      :    :.  :.  :  : : : :. ::     
NP_005 STCSPTPDSTASLPPPPAPGLA------SPRLSPSPLPVALGSGPGPGPGPQ-PLKGALW
     180       190       200             210       220        230  

                                                           
pF1KB7 KSWN                                                
                                                           
NP_005 AGVAGGGGGGPGAGAAELLKAWQPAESGPGPFSGVLSSFHRKPGPALKTNLF
            240       250       260       270       280    

>>NP_057391 (OMIM: 604675) paired mesoderm homeobox prot  (253 aa)
 initn: 317 init1: 261 opt: 302  Z-score: 204.5  bits: 45.2 E(85289): 0.00012
Smith-Waterman score: 320; 40.5% identity (66.0% similar) in 153 aa overlap (45-183:71-220)

           20        30        40        50        60              
pF1KB7 GRVGSSLLPERHPATGTPTTTVDSSAPPCRRLPGAGGGRSRFSPQGGQ-----RG----R
                                     : :..:.. :. .:: :.     ::    :
NP_057 SHLLDLEEVAAAGRLAARPGARAEAREGAAREPSGGSSGSEAAPQDGECPSPGRGSAAKR
               50        60        70        80        90       100

          70        80        90       100       110       120     
pF1KB7 PHSRRRHRTTFSPVQLEQLESAFGRNQYPDIWARESLARDTGLSEARIQVWFQNRRAKQR
        ...::.::::.  ::. :: .: :..::: ..:: ::: ..:::::.:::::::::: :
NP_057 KKKQRRNRTTFNSSQLQALERVFERTHYPDAFVREELARRVNLSEARVQVWFQNRRAKFR
              110       120       130       140       150       160

         130       140       150           160        170       180
pF1KB7 KQERSLLQPLAHLSPATFSSFLPEST----ACPYSYAAPPPPVT-CFPHPYSHALPSQPS
       ..::..   ::  : . ..:.  :..    . :   :  :  ..     ::: . : .:.
NP_057 RNERAM---LASRSASLLKSYSQEAAIEQPVAPRPTALSPDYLSWTASSPYSTVPPYSPG
                 170       180       190       200       210       

              190       200       210       220      
pF1KB7 TGGAFALSHQSEDWYPTLHPAPAGHLPCPPPPPMLPLSLEPSKSWN
       ..:                                           
NP_057 SSGPATPGVNMANSIASLRLKAKEFSLHHSQVPTVN          
       220       230       240       250             

>>XP_011537084 (OMIM: 601527,613456) PREDICTED: ALX home  (231 aa)
 initn: 296 init1: 276 opt: 296  Z-score: 201.3  bits: 44.5 E(85289): 0.00018
Smith-Waterman score: 304; 41.0% identity (65.3% similar) in 144 aa overlap (69-192:37-176)

       40        50        60        70        80        90        
pF1KB7 SAPPCRRLPGAGGGRSRFSPQGGQRGRPHSRRRHRTTFSPVQLEQLESAFGRNQYPDIWA
                                     .:::::::. .:::.::..: ...:::...
XP_011 LRMSPVKGMQEKGELDELGDKCDSNVSSSKKRRHRTTFTSLQLEELEKVFQKTHYPDVYV
         10        20        30        40        50        60      

      100       110       120         130       140        150     
pF1KB7 RESLARDTGLSEARIQVWFQNRRAKQRKQER--SLLQPLAHLSPATFS-SFLPESTACPY
       ::.::  : :.:::.:::::::::: ::.::  .. :  .:.. ::.. : ::.. . : 
XP_011 REQLALRTELTEARVQVWFQNRRAKWRKRERYGQIQQAKSHFA-ATYDISVLPRTDSYPQ
         70        80        90       100        110       120     

                          160       170       180       190        
pF1KB7 -----------------SYAAPPPPVTCFPHPYSHALPSQPSTGGAFALSHQSEDWYPTL
                        :   :    .:.  ::::. :   :.  .:. .::..      
XP_011 IQNNLWAGNASGGSVVTSCMLPRDTSSCMT-PYSHS-PRTDSSYTGFS-NHQNQFSHVPL
         130       140       150        160        170        180  

      200       210       220                           
pF1KB7 HPAPAGHLPCPPPPPMLPLSLEPSKSWN                     
                                                        
XP_011 NNFFTDSLLTGATNGHAFETKPEFERRSSSIAVLRMKAKEHTANISWAM
            190       200       210       220       230 




226 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 01:28:30 2016 done: Sat Nov  5 01:28:31 2016
 Total Scan time:  8.140 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com