GENSCAN 1.0	Date run:  7-Nov-116	Time: 22:28:56

Sequence gi568815594f:153250063_153514854 : 264792 bp : 41.21% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.04 PlyA -    853    848    6                               1.05
 1.03 Term -   4020   3903  118  2  1  106   42    86 0.139   2.83
 1.02 Intr -   7316   7106  211  0  1   13   92    95 0.022  -0.55
 1.01 Init -  10747  10660   88  1  1   58    3   196 0.405   8.95
 1.00 Prom -  10974  10935   40                              -6.95

 2.00 Prom +  17094  17133   40                              -4.65
 2.01 Init +  20324  20457  134  1  2   64   99    93 0.932   7.66
 2.02 Intr +  25831  26068  238  1  1   93  101   233 0.931  21.79
 2.03 Intr +  42920  43071  152  1  2   93   81   178 0.774  15.64
 2.04 Intr +  44243  44423  181  2  1   69   69   196 0.977  14.75
 2.05 Term +  45251  46006  756  1  0  114   49  1086 0.973  99.74
 2.06 PlyA +  56273  56278    6                               1.05

 3.04 PlyA -  57155  57150    6                               1.05
 3.03 Term -  58345  57647  699  1  0   13   42   736 0.482  54.05
 3.02 Intr -  58716  58380  337  2  1   16   -1   305 0.242   9.00
 3.01 Init -  59530  59475   56  1  2   72   58    48 0.496   1.01
 3.00 Prom -  61550  61511   40                              -8.25

 4.00 Prom +  62673  62712   40                              -3.65
 4.01 Init +  63762  63810   49  2  1   86   91    36 0.990   2.86
 4.02 Intr +  65423  65526  104  0  2   88   80    35 0.995   1.67
 4.03 Intr +  65770  65937  168  0  0   53  116   191 0.993  17.62
 4.04 Intr +  72586  72754  169  0  1   62   86   195 0.692  15.30
 4.05 Intr +  74016  74086   71  1  2  100   74     4 0.708  -1.82
 4.06 Intr +  78468  78608  141  2  0   40   76   164 0.812  10.03
 4.07 Term +  84752  84904  153  1  0  119   39   136 0.999   8.74
 4.08 PlyA +  86341  86346    6                               1.05

 5.03 PlyA -  86616  86611    6                               1.05
 5.02 Term -  94107  94034   74  1  2  107   54    39 0.695  -0.51
 5.01 Init -  94677  94554  124  0  1   88   59   181 0.897  13.58
 5.00 Prom - 102916 102877   40                              -4.55

 6.00 Prom + 103350 103389   40                              -8.35
 6.01 Init + 108417 108560  144  2  0   40  115   148 0.859  12.87
 6.02 Term + 112373 112480  108  1  0   70   46    65 0.429  -1.97
 6.03 PlyA + 114016 114021    6                               1.05

 7.04 PlyA - 114657 114652    6                               1.05
 7.03 Term - 116107 115910  198  1  0  -21   54   212 0.018   3.32
 7.02 Intr - 138817 138706  112  0  1   80   80    92 0.040   7.06
 7.01 Init - 162408 162305  104  0  2   77   81    96 0.240   7.56
 7.00 Prom - 172581 172542   40                              -4.05

 8.03 PlyA - 172603 172598    6                               1.05
 8.02 Term - 180502 180345  158  2  2   75   43   135 0.283   4.81
 8.01 Init - 197119 196936  184  1  1   80   14   188 0.509   9.93
 8.00 Prom - 199461 199422   40                              -0.75

 9.02 PlyA - 200869 200864    6                               1.05
 9.01 Sngl - 202507 202088  420  1  0   67   49   319 0.610  21.95
 9.00 Prom - 205596 205557   40                              -5.05

10.00 Prom + 210900 210939   40                              -5.65
10.01 Init + 210954 211577  624  2  0   71   60   228 0.256  13.69
10.02 Intr + 215043 215156  114  2  0   66   92    49 0.022   2.82
10.03 Term + 216521 216619   99  1  0  120   47    46 0.212   0.85
10.04 PlyA + 217340 217345    6                               1.05

11.05 PlyA - 217794 217789    6                               1.05
11.04 Term - 221373 221268  106  2  1   75   48   107 0.298   2.30
11.03 Intr - 223390 223104  287  1  2   93   45   221 0.351  13.52
11.02 Intr - 224107 224055   53  2  2   25   97    56 0.657  -2.09
11.01 Init - 230931 230727  205  0  1   45   86   218 0.396  16.36
11.00 Prom - 232433 232394   40                              -3.65

12.03 PlyA - 232534 232529    6                               1.05
12.02 Term - 238884 238714  171  0  0   64   48   230 0.635  13.44
12.01 Init - 257495 257427   69  2  0   75   87    46 0.041   4.30

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Sngl - 116065 115910  156  1  0   63   54   182 0.913   6.45
S.002 Intr + 144200 144274   75  1  0   49  127    96 0.803   8.39


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815594f:153250063_153514854|GENSCAN_predicted_peptide_1|138_aa
MGHFVNQKARCIIFPDDDDDDHDDDDDDVYCSKPGKGLWDRDAAASCNEIRGWLAFPLSQ
QSAVSMLSCWAAELHHQKVTAGFTRGEATSAVSVQRSRGSHTLFIRHSVTGKRSRSRPQE
RVLGSPARRNSGRVHSAK

>gi568815594f:153250063_153514854|GENSCAN_predicted_CDS_1|417_bp
atgggccattttgtaaatcagaaggctagatgcattatctttcctgatgatgatgatgat
gatcatgatgatgatgatgatgatgtgtactgcagcaaaccaggcaagggattatgggat
agggatgcagcagcgagctgcaatgagattcgtgggtggcttgctttccctctgagtcag
cagtcagctgtttccatgctctcgtgctgggccgctgagctccatcaccagaaagtgact
gcaggattcaccaggggagaggcgaccagtgcagtctccgtgcaacgcagccggggcagt
cacactctgttcataagacattctgttactggaaagcggtcccgatccagaccccaagag
agggttcttggatctcctgcaagaaggaattcagggcgagtccacagtgcaaagtaa

>gi568815594f:153250063_153514854|GENSCAN_predicted_peptide_2|486_aa
MASEGTNIPSPVVRQIDKQFLICSICLERYKNPKVLPCLHTFCERCLQNYIPAHSLTLSC
PVCRQTSILPEKGVAALQNNFFITNLMDVLQRTPGSNAEESSILETVTAVAAGKPLSCPN
HDGNVMEFYCQSCETAMCRECTEGEHAEHPTVPLKDVVEQHKASLQVQLDAVNKRLPEID
SALQFISEIIHQLTNQKASIVDDIHSTFDELQKTLNVRKSVLLMELEVNYGLKHKVLQSQ
LDTLLQGQESIKSCSNFTAQALNHGTETEVLLVKKQMSEKLNELADQDFPLHPRENDQLD
FIVETEGLKKSIHNLGTILTTNAVASETVATGEGLRQTIIGQPMSVTITTKDKDGELCKT
GNAYLTAELSTPDGSVADGEILDNKNGTYEFLYTVQKEGDFTLSLRLYDQHIRGSPFKLK
VIRSADVSPTTEGVKRRVKSPGSGHVKQKAVKRPASMYSTGKRKENPIEDDLIFRVGKER
ASVPDA

>gi568815594f:153250063_153514854|GENSCAN_predicted_CDS_2|1461_bp
atggccagtgaaggcaccaacatcccaagtcctgtggtgcgccagattgacaagcagttt
ctgatttgcagtatatgcctggaacggtacaagaatcccaaggttctcccctgtctgcac
actttctgcgagaggtgcctgcagaactacattcctgcccacagtttaaccctctcctgc
ccagtgtgccgccagacctccatcctgcccgagaaaggggtggccgcgctccagaacaat
ttcttcatcacaaacctgatggacgtgctgcagcgaactccaggcagcaacgctgaggag
tcttccatcctggagacagtcactgctgtggctgcgggaaagcctctctcttgcccaaac
cacgatgggaatgtgatggaattttactgccagtcctgtgagactgccatgtgtcgggag
tgcacggagggggagcacgcagagcaccccacagttccactcaaggatgtggtggaacag
cacaaggcctcgctccaggtccagctggatgctgtcaacaaaaggctcccagaaatagat
tctgctcttcagttcatctctgaaatcattcatcagttaaccaaccaaaaggccagcatc
gtggatgacattcattccacctttgatgagctccagaagactttaaatgtgcgcaagagt
gtgctgcttatggaattggaggtcaactatggcctcaaacacaaagtcctccagtcgcag
ctggatactctgctccaggggcaggagagcattaagagctgcagcaacttcacagcgcag
gccctcaaccatggcacggagaccgaggtcctactggtgaagaagcagatgagcgagaag
ctgaacgagctggccgaccaggacttccccttgcacccgcgggagaacgaccagctggat
ttcatcgtggaaaccgaggggctgaagaagtccatccacaacctcgggacgatcttaacc
accaacgccgttgcctcagagacagtggccacgggcgaggggctgcggcagaccatcatc
gggcagcccatgtccgtcaccatcaccaccaaggacaaagacggtgagctgtgcaaaacc
ggcaacgcctacctcaccgccgaactgagcacccccgacgggagcgtggcagacggggag
atcctggacaacaagaacggcacctatgagtttttgtacactgtccagaaggaaggggac
tttaccctgtctctgagactctatgaccagcacatccgaggcagcccgtttaagctgaaa
gtgatccgatccgctgatgtgtctcccaccacagaaggcgtgaagaggcgcgttaagtcc
ccggggagcggccacgtcaagcagaaagctgtgaaaagacccgcaagcatgtacagcact
ggaaaacgaaaagagaatcccatcgaagacgatttgatctttcgagtgggtaaggagagg
gcttctgtgcccgacgcctga

>gi568815594f:153250063_153514854|GENSCAN_predicted_peptide_3|363_aa
MQQDETEPSVRSNTGSSINPASFKISAVHEILCKLSLEGEHSTLPSAFGSVKAYTKFDAE
QDALNIEMAIKTKGVDEITTVNILTNHSNAQRQDIAFTYQRRTKKELVSALKSALSGHLD
SGFGPIKDTCSGLGTNKDSLIEIICSRTNQELQEINRVYKEMYKTDLEKDIISDTSGDFC
KLMVALAKGRRAEDGSVIDYELIDQDARDLYDAGVKRKGTEVPKWISVMTERSMSHFQKV
FDRYKSYSPYDMLESIKKEVKGDLENSFLNLVQCIQNKPLYFADRLYDSIMGMGTQDKVL
IRIMVSHNEVDMLKIRSEFKRKYSKSLYYYIQQDTKGAVPVWWRWLKSDTARASRNGAPH
ASS

>gi568815594f:153250063_153514854|GENSCAN_predicted_CDS_3|1092_bp
atgcaacaagatgaaactgagccaagtgtaagatctaacacaggatcttcaatcaaccca
gcttccttcaaaatatctgctgttcatgaaatcctgtgcaagctcagcttggagggtgaa
cactctacactcccaagtgcatttgggtcagtcaaagcctacaccaaatttgatgctgag
caggatgctttgaacattgaaatggccatcaagaccaaaggtgtggatgagatcaccact
gtcaacattttgactaaccacagcaatgcacagagacaggatattgccttcacctaccag
agaaggaccaaaaaggaacttgtatcagcacttaagtcagccttatctggccacctagat
agtggctttgggcctattaaagacacctgctcagggctgggaaccaacaaggactccctc
attgagatcatctgctcaagaaccaaccaagagctgcaggaaattaacagagtctacaag
gaaatgtacaagactgatctggagaaggacattatttcggacacatctggtgacttctgc
aagctgatggttgccctggcaaagggtagaagagcagaggatggctctgtcattgattat
gaactgattgaccaagatgcccgggatctctatgacgctggggtgaagaggaaaggaact
gaagttcccaagtggatcagcgtcatgaccgagcggagcatgtcccacttccagaaagta
tttgataggtacaagagctacagtccttatgacatgttggagagcatcaagaaagaggtt
aaaggagacctggaaaattctttcctgaacctggtccagtgtattcagaacaagcccctg
tatttcgctgaccggctgtacgactccataatgggcatggggactcaagataaggtcctg
atcagaatcatggtctcccacaatgaagtggacatgttgaaaattaggtctgaattcaag
agaaagtatagcaagtccctgtactattacatccagcaagacactaagggtgctgtacct
gtgtggtggagatggctgaagtccgacacagcacgagcgtccagaaatggtgctccccat
gcttccagctaa

>gi568815594f:153250063_153514854|GENSCAN_predicted_peptide_4|284_aa
MGFHHVGQAGLELLTSGTKGRNKGEFTNLQGVAASTNGKILIADSNNQCVQIFSNDGQFK
SRFGIRGRSPGQLQRPTGVAVHPSGDIIIADYDNKWVSIFSSDGKFKTKIGSGKLMGPKG
VSVDRNGHIIVVDNKACCVFIFQPNGKIVTRFGSRGNGDRQFAGPHFAAVNSNNEIIITD
FHNHSVKVFNQEGEFMLKFGSNGEGNGQFNAPTGVAVDSNGNIIVADWGNSRIQVFDGSG
SFLSYINTSADPLYGPQGLALTSDGHVVVADSGNHCFKVYRYLQ

>gi568815594f:153250063_153514854|GENSCAN_predicted_CDS_4|855_bp
atggggtttcaccatgttggccaggctggtctcgaactcctgacctcaggtaccaaagga
agaaataaaggagagtttacaaatcttcagggggtagctgcatctacaaatggaaagata
ttaattgcagacagtaacaaccaatgtgtgcagatattttccaatgatggccagttcaaa
agtcgttttggcatacggggacgctctccggggcagctgcagcggcccacaggagtggct
gtacatcccagtggggacataatcattgccgattatgataataaatgggtcagcattttc
tcctccgatgggaaatttaagacaaaaattggatcaggaaagctgatgggacccaaagga
gtttctgtggaccgcaatgggcacattattgttgtggacaacaaggcgtgctgcgtgttt
atcttccagccaaacgggaaaatagtcaccaggtttggtagccgaggaaatggggacagg
cagtttgcaggtccccattttgcagctgtaaatagcaataatgagattattattacagat
ttccataatcattctgtcaaggtgtttaatcaggaaggagaattcatgttgaagtttggc
tcaaatggagaaggaaatgggcagtttaatgctccaacaggtgtagcagtggattcaaat
ggaaacatcattgtggccgactggggaaacagcaggatccaggtttttgatgggagtgga
tcatttttgtcctacattaacacatctgctgacccactctatggcccccaaggcctggcc
ctaacttcagatggtcatgttgtggttgcagactctggaaatcactgtttcaaagtctat
cgatacttacagtaa

>gi568815594f:153250063_153514854|GENSCAN_predicted_peptide_5|65_aa
MARAQGLPLAGPALGERGGTGQDAFDFGADYAAGAEQRDGGGFKKEGNNGMNFKSTWSKI
RYFMA

>gi568815594f:153250063_153514854|GENSCAN_predicted_CDS_5|198_bp
atggcgcgggcgcaggggcttccgctggccgggcccgcgcttggggagaggggcgggaca
ggccaggacgcgtttgattttggcgccgactacgccgcgggggcggagcagcgagacggt
ggaggttttaaaaaagaaggaaacaacggaatgaatttcaaatcaacatggtcaaaaata
cgctacttcatggcttga

>gi568815594f:153250063_153514854|GENSCAN_predicted_peptide_6|83_aa
MSVKEVLQSLVDDGMVDCERIGTSNYYWAFPSKALHARKHKLEVLESQSCFCHVKCLLAL
SKGSLRPPQKQKPPCFQVEPAEA

>gi568815594f:153250063_153514854|GENSCAN_predicted_CDS_6|252_bp
atgtcagtaaaagaagtccttcaaagcttagttgatgatggtatggttgactgtgagagg
atcggaacttctaattattattgggcttttccaagtaaagctcttcatgcaaggaaacat
aagttggaggttctggaatctcagtcctgcttctgccatgtaaaatgcctgctcgccctg
agtaaaggatccctgaggcctccccagaagcagaagccaccatgcttccaagtagagcct
gcagaagcatga

>gi568815594f:153250063_153514854|GENSCAN_predicted_peptide_7|137_aa
MERHRKNCERTQGEGRPGETKPANILILKFDPPGCEILLCPSLPFNCQYILVLLGSRIRA
REPPMAVQAVTQQSRKQCDQEAEIRVMQQQVKECWQPTEIERGKEDYPREPLEEQQLCQH
FDFGLVTLIFNFWPPEL

>gi568815594f:153250063_153514854|GENSCAN_predicted_CDS_7|414_bp
atggagagacacaggaaaaactgtgagaggacacagggagaaggaagacctggagaaacc
aaacctgccaacatcttgatcttgaaatttgatcctccaggatgtgaaattcttctctgt
ccatccttacccttcaactgtcagtatattcttgttcttcttggaagcagaataagagct
cgggaaccgccaatggcagtacaagctgtaacacagcagagcagaaagcaatgtgaccaa
gaggcagaaattagagtgatgcagcaacaagtcaaagaatgctggcagcccacagaaatt
gaaagaggcaaggaagattatcccagagagcctctggaggagcaacagctgtgccaacac
tttgattttggcctagtaacactgatttttaacttctggcctccagagctgtga

>gi568815594f:153250063_153514854|GENSCAN_predicted_peptide_8|113_aa
MAKTCLHVCDLRTGSGKGEERDQMSLATCHREYVKEKQEVDGIFSEVPGPTVSEEPQFGA
HVLIDMHYQFDFCFCTKTDYLSDSDLAIPLCEWYKVGISKVTGEALVFQESLL

>gi568815594f:153250063_153514854|GENSCAN_predicted_CDS_8|342_bp
atggctaaaacttgtcttcatgtttgtgacttgagaactggaagtggaaagggggaggag
agggaccaaatgtcactagcaacctgccatcgagaatatgttaaggagaagcaggaggtt
gatggaatcttctcagaggtccctggtcccacagtgtctgaggagcctcaatttggtgcc
catgtgcttattgacatgcactaccaattcgatttctgtttctgcaccaagaccgattat
ctttcggactcagaccttgccattcctctttgtgaatggtataaagtaggcatttcaaaa
gtgactggagaagctctggtgttccaagaatctcttttgtag

>gi568815594f:153250063_153514854|GENSCAN_predicted_peptide_9|139_aa
MIRGGLHQQRKLVPCESQSSHPGWPWQTHREQGLSAQEEKPGRRQTGRAVENTTQSKSTA
NSSFSETAGRSPDERMQLSEARGLQAARAKGQNHNQRVCEPHAVALAAAARGLQRKATAS
PSSPAETSELPESSEKGKM

>gi568815594f:153250063_153514854|GENSCAN_predicted_CDS_9|420_bp
atgatcagagggggcctccaccagcaaagaaaattggttccatgcgaatcacagtcctca
caccctggctggccgtggcagacacacagagagcagggtctgtcagctcaggaagagaaa
ccaggcaggaggcaaacgggccgggccgtggagaacacgacccaaagcaagtcaactgcc
aacagtagcttctcggaaacagcaggacgcagcccagacgagcgaatgcagctctcagag
gcgcgaggactccaggccgccagagccaaggggcagaatcacaatcagcgggtgtgtgaa
cctcatgcagtggccctggcggctgctgccagagggctgcagagaaaggctacggcatcg
cccagcagccctgctgagacgtcggaactcccagaaagtagtgagaagggcaagatgtag

>gi568815594f:153250063_153514854|GENSCAN_predicted_peptide_10|278_aa
MGKGFMTKTPKAMAAKAKIDKGDLIKLKSFCTAKETTIRVNRQPTEWEKIFTINPSDKGL
ISRIYKELKQIYKKKSNNPIKKWAKDMNRHFSKEDIYAANRHMKKCSSSLAVREMQIKTT
MRYHLTPVRMAIIKKSGNNRCWRGCGEIGTLLHCWWDCKLLQPLWKTVWRFLKDLELEIP
VSRNTQPSHYWVYTERIINHAGIKTHAHERGSRFHFVLLRIVSAMQALVFYSLACKAQGA
IKQRIKGTAEIYKRARGGKGKGQEEEGKLLRFSADNIF

>gi568815594f:153250063_153514854|GENSCAN_predicted_CDS_10|837_bp
atgggcaagggcttcatgactaaaacaccaaaagcaatggcagcaaaagccaaaattgac
aaaggggatctaattaaactaaagagcttctgcacagcaaaagaaactaccatcagagtg
aacaggcaacctacagaatgggagaaaatttttacaatcaacccatctgacaaagggcta
atatccagaatctacaaagaacttaaacaaatttacaagaaaaaatcaaacaaccccatc
aaaaagtgggcgaaggatatgaacagacacttctcaaaagaagacatttatgcagccaac
agacacatgaaaaaatgctcatcatcactggccgtcagagaaatgcaaatcaaaaccaca
atgagataccatctcacaccagttagaatggcgatcattaaaaagtcaggaaacaacagg
tgctggagaggatgtggagaaataggaacacttttacactgttggtgggactgtaaacta
cttcaaccattgtggaagacagtgtggcgattcctcaaggatctagaactagaaatacca
gtttctagaaatacccagccatcccattactgggtatataccgaaaggattataaatcat
gctggtataaagacacatgcacacgaaagaggatctagatttcattttgtccttctcagg
attgtgtctgctatgcaagcactggttttctatagtctggcttgtaaggcacaaggagca
attaaacagaggattaagggaactgctgaaatctataagagggcgaggggaggaaaggga
aaggggcaggaggaggaaggaaagctgttgcgattctccgctgataacattttctga

>gi568815594f:153250063_153514854|GENSCAN_predicted_peptide_11|216_aa
MTGKDVGQMDVRRTGWGGYRMETEDHMKTQPHLVTAGTGTGDSERPRSSVQDTVILWHLQ
AKGELWGEDVYKQEGGHKHIMEKVKLKDLPTHGKPSSYLSFLPTQQPTPSVAPAVLEDKR
SFLLCLQTAACNHPVHHRTLCSKDQSPHIIHSLSPLSHSKDPALNVITSVPAQEPTMAPS
NWTTSWAVLNVYCMQDTVATAGHQPLAAQPLKGEPS

>gi568815594f:153250063_153514854|GENSCAN_predicted_CDS_11|651_bp
atgacaggaaaggatgtaggacaaatggacgtgaggagaacaggatggggtggctacaga
atggagacagaagaccacatgaagactcaaccacacctcgtgacggcaggcacaggaact
ggggacagcgagaggcccagaagctcagttcaggacacagtaattttgtggcacctgcaa
gctaaaggagaactctggggagaagatgtttataaacaagagggagggcacaagcacatc
atggaaaaagtgaaattgaaagacctacccactcacgggaaacccagttcctacctgtcc
tttcttccaacacagcagcccacaccatcagtagccccggctgtattagaagacaaacgc
agctttcttctctgcctgcagactgctgcctgcaaccatccggtgcaccatcgcactctg
tgcagcaaagaccagtctcctcatatcattcactccttatcacccttatcacacagtaag
gacccagcactcaatgtcatcacttcagtccctgctcaagaacctactatggctccctcc
aactggacgacttcatgggcagtactgaatgtctactgtatgcaggacactgtggccaca
gcagggcaccaacccttagcagcccagcccctcaaaggagaacccagttaa

>gi568815594f:153250063_153514854|GENSCAN_predicted_peptide_12|79_aa
MRTHNVENNTNVNTMFQTLGSHKPRESTETPRESAVRQETGVPQLQAKKPHRLPASPQKL
GKGEGGLPEGFRGSVALPA

>gi568815594f:153250063_153514854|GENSCAN_predicted_CDS_12|240_bp
atgaggactcacaatgtggagaataatacaaatgtgaacacgatgttccagactcttgga
agccataagccacgtgaaagcacggagacacccagggagagcgctgtgcgacaagagact
ggagtgccgcagctgcaagccaagaaaccccacaggctgccggcgagcccgcagaagcta
ggaaaaggcgagggcggactccccgagggtttcagaggcagcgtggccctgccggcttga