Result of FASTA (ccds) for pF1KE1355
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1355, 282 aa
  1>>>pF1KE1355 282 - 282 aa - 282 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9800+/-0.000853; mu= 16.2474+/- 0.052
 mean_var=54.2118+/-10.745, 0's: 0 Z-trim(104.3): 16  B-trim: 0 in 0/50
 Lambda= 0.174192
 statistics sampled from 7837 (7845) to 7837 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.624), E-opt: 0.2 (0.241), width:  16
 Scan time:  2.310

The best scores are:                                      opt bits E(32554)
CCDS10507.1 DNASE1 gene_id:1773|Hs108|chr16        ( 282) 1875 479.2 1.4e-135
CCDS2886.1 DNASE1L3 gene_id:1776|Hs108|chr3        ( 305)  795 207.8 7.7e-54
CCDS14747.1 DNASE1L1 gene_id:1774|Hs108|chrX       ( 302)  626 165.4 4.6e-41
CCDS42105.1 DNASE1L2 gene_id:1775|Hs108|chr16      ( 299)  556 147.8 9.1e-36
CCDS58836.1 DNASE1L3 gene_id:1776|Hs108|chr3       ( 275)  547 145.5 4.1e-35


>>CCDS10507.1 DNASE1 gene_id:1773|Hs108|chr16             (282 aa)
 initn: 1875 init1: 1875 opt: 1875  Z-score: 2547.4  bits: 479.2 E(32554): 1.4e-135
Smith-Waterman score: 1875; 100.0% identity (100.0% similar) in 282 aa overlap (1-282:1-282)

               10        20        30        40        50        60
pF1KE1 MRGMKLLGALLALAALLQGAVSLKIAAFNIQTFGETKMSNATLVSYIVQILSRYDIALVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MRGMKLLGALLALAALLQGAVSLKIAAFNIQTFGETKMSNATLVSYIVQILSRYDIALVQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 EVRDSHLTAVGKLLDNLNQDAPDTYHYVVSEPLGRNSYKERYLFVYRPDQVSAVDSYYYD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 EVRDSHLTAVGKLLDNLNQDAPDTYHYVVSEPLGRNSYKERYLFVYRPDQVSAVDSYYYD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 DGCEPCGNDTFNREPAIVRFFSRFTEVREFAIVPLHAAPGDAVAEIDALYDVYLDVQEKW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 DGCEPCGNDTFNREPAIVRFFSRFTEVREFAIVPLHAAPGDAVAEIDALYDVYLDVQEKW
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 GLEDVMLMGDFNAGCSYVRPSQWSSIRLWTSPTFQWLIPDSADTTATPTHCAYDRIVVAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 GLEDVMLMGDFNAGCSYVRPSQWSSIRLWTSPTFQWLIPDSADTTATPTHCAYDRIVVAG
              190       200       210       220       230       240

              250       260       270       280  
pF1KE1 MLLRGAVVPDSALPFNFQAAYGLSDQLAQAISDHYPVEVMLK
       ::::::::::::::::::::::::::::::::::::::::::
CCDS10 MLLRGAVVPDSALPFNFQAAYGLSDQLAQAISDHYPVEVMLK
              250       260       270       280  

>>CCDS2886.1 DNASE1L3 gene_id:1776|Hs108|chr3             (305 aa)
 initn: 678 init1: 364 opt: 795  Z-score: 1080.1  bits: 207.8 E(32554): 7.7e-54
Smith-Waterman score: 795; 44.8% identity (72.4% similar) in 279 aa overlap (7-282:5-282)

               10        20        30        40        50        60
pF1KE1 MRGMKLLGALLALAALLQGAVSLKIAAFNIQTFGETKMSNATLVSYIVQILSRYDIALVQ
             :. :: :   ...:....: .::...:::.:. . . .. ::....: :: ::.
CCDS28   MSRELAPLLLLLLSIHSALAMRICSFNVRSFGESKQEDKNAMDVIVKVIKRCDIILVM
                 10        20        30        40        50        

               70        80          90       100       110        
pF1KE1 EVRDSHLTAVGKLLDNLNQDAPD--TYHYVVSEPLGRNSYKERYLFVYRPDQVSAVDSYY
       :..::.      :...::...    ::.::.:  ::::.:::.: :.:.   ::.  ::.
CCDS28 EIKDSNNRICPILMEKLNRNSRRGITYNYVISSRLGRNTYKEQYAFLYKEKLVSVKRSYH
       60        70        80        90       100       110        

      120       130       140       150       160       170        
pF1KE1 YDDGCEPCGNDTFNREPAIVRFFSRFTEVREFAIVPLHAAPGDAVAEIDALYDVYLDVQE
       : :  .    :.:.::: .: : :  : :..:.:.:::..:  .: ::: : .:: ::..
CCDS28 YHDY-QDGDADVFSREPFVVWFQSPHTAVKDFVIIPLHTTPETSVKEIDELVEVYTDVKH
      120        130       140       150       160       170       

      180       190       200       210       220        230       
pF1KE1 KWGLEDVMLMGDFNAGCSYVRPSQWSSIRLWTSPTFQWLIPDSADTTATP-THCAYDRIV
       .:  :. ..:::::::::::  . :..::: :.: : ::: :. :::.   :.:::::::
CCDS28 RWKAENFIFMGDFNAGCSYVPKKAWKNIRLRTDPRFVWLIGDQEDTTVKKSTNCAYDRIV
       180       190       200       210       220       230       

       240       250       260       270       280                 
pF1KE1 VAGMLLRGAVVPDSALPFNFQAAYGLSDQLAQAISDHYPVEVMLK               
       . :. . ..::: :   :.:: :: :... :  .:::.:::  :.               
CCDS28 LRGQEIVSSVVPKSNSVFDFQKAYKLTEEEALDVSDHFPVEFKLQSSRAFTNSKKSVTLR
       240       250       260       270       280       290       

CCDS28 KKTKSKRS
       300     

>>CCDS14747.1 DNASE1L1 gene_id:1774|Hs108|chrX            (302 aa)
 initn: 562 init1: 275 opt: 626  Z-score: 850.6  bits: 165.4 E(32554): 4.6e-41
Smith-Waterman score: 626; 39.1% identity (68.8% similar) in 276 aa overlap (9-282:6-273)

               10        20        30        40        50        60
pF1KE1 MRGMKLLGALLALAALLQGAVSLKIAAFNIQTFGETKMSNATLVSYIVQILSRYDIALVQ
               ::: :  : .:: ...: ::: : .  .:..   ... .:.::.: :: ..:
CCDS14    MHYPTALLFLI-LANGAQAFRICAFNAQRLTLAKVAREQVMDTLVRILARCDIMVLQ
                  10         20        30        40        50      

               70         80        90       100       110         
pF1KE1 EVRDSHLTAVGKLLDNLNQ-DAPDTYHYVVSEPLGRNSYKERYLFVYRPDQVSAVDSYYY
       :: ::  .:.  :: .::. :.   :  . :  :::..: : :.. ::  ......:: :
CCDS14 EVVDSSGSAIPLLLRELNRFDGSGPYSTLSSPQLGRSTYMETYVYFYRSHKTQVLSSYVY
         60        70        80        90       100       110      

     120       130       140       150       160       170         
pF1KE1 DDGCEPCGNDTFNREPAIVRFFSRFTEVREFAIVPLHAAPGDAVAEIDALYDVYLDVQEK
       .:      .:.: ::: ...:    . .  ...::::..:  .  :..:::::.:.:...
CCDS14 NDE-----DDVFAREPFVAQFSLPSNVLPSLVLVPLHTTPKAVEKELNALYDVFLEVSQH
             120       130       140       150       160       170 

     180       190       200       210       220        230        
pF1KE1 WGLEDVMLMGDFNAGCSYVRPSQWSSIRLWTSPTFQWLIPDSADTTA-TPTHCAYDRIVV
       :  .::.:.::::: :. .  .. ....: : : :.:.: :. :::. . :::.:::.:.
CCDS14 WQSKDVILLGDFNADCASLTKKRLDKLELRTEPGFHWVIADGEDTTVRASTHCTYDRVVL
             180       190       200       210       220       230 

      240       250       260       270       280                  
pF1KE1 AGMLLRGAVVPDSALPFNFQAAYGLSDQLAQAISDHYPVEVMLK                
        :   :. .   .:  :.: ... :... :  ::::::::: ::                
CCDS14 HGERCRSLL--HTAAAFDFPTSFQLTEEEALNISDHYPVEVELKLSQAHSVQPLSLTVLL
             240         250       260       270       280         

CCDS14 LLSLLSPQLCPAA
     290       300  

>>CCDS42105.1 DNASE1L2 gene_id:1775|Hs108|chr16           (299 aa)
 initn: 898 init1: 556 opt: 556  Z-score: 755.6  bits: 147.8 E(32554): 9.1e-36
Smith-Waterman score: 916; 51.2% identity (73.4% similar) in 297 aa overlap (6-282:7-296)

                10        20        30        40        50         
pF1KE1  MRGMKLLGALLALAALLQGAVSLKIAAFNIQTFGETKMSNATLVSYIVQILSRYDIALV
             ::.:: :: :   :...:.:.:::::.::..:.:. .  : :..::. ::.:::
CCDS42 MGGPRALLAALWALEA--AGTAALRIGAFNIQSFGDSKVSDPACGSIIAKILAGYDLALV
               10          20        30        40        50        

      60        70        80        90       100       110         
pF1KE1 QEVRDSHLTAVGKLLDNLNQDAPDTYHYVVSEPLGRNSYKERYLFVYRPDQVSAVDSYYY
       :::::  :.::. :....:. .   : .: :.::::..::: :::::: : ::.::.: :
CCDS42 QEVRDPDLSAVSALMEQINSVSEHEYSFVSSQPLGRDQYKEMYLFVYRKDAVSVVDTYLY
       60        70        80        90       100       110        

     120       130       140                           150         
pF1KE1 DDGCEPCGNDTFNREPAIVRFFSRFTEVR--------------------EFAIVPLHAAP
        :   :  .:.:.::: .:.: .  :  :                    .....::::::
CCDS42 PD---P--EDVFSREPFVVKFSAPGTGERAPPLPSRRALTPPPLPAAAQNLVLIPLHAAP
      120            130       140       150       160       170   

     160       170       180       190       200       210         
pF1KE1 GDAVAEIDALYDVYLDVQEKWGLEDVMLMGDFNAGCSYVRPSQWSSIRLWTSPTFQWLIP
        .::::::::::::::: .::: .:....::::: ::::: ..:..::: .: .:.::::
CCDS42 HQAVAEIDALYDVYLDVIDKWGTDDMLFLGDFNADCSYVRAQDWAAIRLRSSEVFKWLIP
           180       190       200       210       220       230   

     220       230       240       250       260       270         
pF1KE1 DSADTTATPTHCAYDRIVVAGMLLRGAVVPDSALPFNFQAAYGLSDQLAQAISDHYPVEV
       ::::::.  . :::::::. :  :: .. :.::   .::  .::..  : :::::.::::
CCDS42 DSADTTVGNSDCAYDRIVACGARLRRSLKPQSATVHDFQEEFGLDQTQALAISDHFPVEV
           240       250       260       270       280       290   

     280     
pF1KE1 MLK   
        ::   
CCDS42 TLKFHR
             

>>CCDS58836.1 DNASE1L3 gene_id:1776|Hs108|chr3            (275 aa)
 initn: 694 init1: 364 opt: 547  Z-score: 744.0  bits: 145.5 E(32554): 4.1e-35
Smith-Waterman score: 644; 40.1% identity (65.3% similar) in 277 aa overlap (7-282:5-252)

               10        20        30        40        50        60
pF1KE1 MRGMKLLGALLALAALLQGAVSLKIAAFNIQTFGETKMSNATLVSYIVQILSRYDIALVQ
             :. :: :   ...:....: .::...:::.:. . . .. ::....: :: ::.
CCDS58   MSRELAPLLLLLLSIHSALAMRICSFNVRSFGESKQEDKNAMDVIVKVIKRCDIILVM
                 10        20        30        40        50        

               70        80        90       100       110       120
pF1KE1 EVRDSHLTAVGKLLDNLNQDAPDTYHYVVSEPLGRNSYKERYLFVYRPDQVSAVDSYYYD
       :..::.      :...::                    .:. . : :        ::.: 
CCDS58 EIKDSNNRICPILMEKLN--------------------REKLVSVKR--------SYHYH
       60        70                            80                90

              130       140       150       160       170       180
pF1KE1 DGCEPCGNDTFNREPAIVRFFSRFTEVREFAIVPLHAAPGDAVAEIDALYDVYLDVQEKW
       :  .    :.:.::: .: : :  : :..:.:.:::..:  .: ::: : .:: ::...:
CCDS58 DY-QDGDADVFSREPFVVWFQSPHTAVKDFVIIPLHTTPETSVKEIDELVEVYTDVKHRW
               100       110       120       130       140         

              190       200       210       220        230         
pF1KE1 GLEDVMLMGDFNAGCSYVRPSQWSSIRLWTSPTFQWLIPDSADTTATP-THCAYDRIVVA
         :. ..:::::::::::  . :..::: :.: : ::: :. :::.   :.:::::::. 
CCDS58 KAENFIFMGDFNAGCSYVPKKAWKNIRLRTDPRFVWLIGDQEDTTVKKSTNCAYDRIVLR
     150       160       170       180       190       200         

     240       250       260       270       280                   
pF1KE1 GMLLRGAVVPDSALPFNFQAAYGLSDQLAQAISDHYPVEVMLK                 
       :. . ..::: :   :.:: :: :... :  .:::.:::  :.                 
CCDS58 GQEIVSSVVPKSNSVFDFQKAYKLTEEEALDVSDHFPVEFKLQSSRAFTNSKKSVTLRKK
     210       220       230       240       250       260         

CCDS58 TKSKRS
     270     




282 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 22:31:13 2016 done: Sun Nov  6 22:31:13 2016
 Total Scan time:  2.310 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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