Result of FASTA (ccds) for pF1KB6668
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6668, 453 aa
  1>>>pF1KB6668 453 - 453 aa - 453 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7285+/-0.000832; mu= 16.8388+/- 0.051
 mean_var=88.2570+/-17.662, 0's: 0 Z-trim(109.6): 8  B-trim: 155 in 1/51
 Lambda= 0.136521
 statistics sampled from 11009 (11014) to 11009 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.704), E-opt: 0.2 (0.338), width:  16
 Scan time:  3.360

The best scores are:                                      opt bits E(32554)
CCDS977.1 PRUNE1 gene_id:58497|Hs108|chr1          ( 453) 2949 590.7  1e-168
CCDS76211.1 PRUNE1 gene_id:58497|Hs108|chr1        ( 271) 1764 357.1 1.3e-98
CCDS78407.1 PRUNE2 gene_id:158471|Hs108|chr9       (3062)  441 97.3 2.3e-19
CCDS47982.1 PRUNE2 gene_id:158471|Hs108|chr9       (3088)  441 97.3 2.4e-19


>>CCDS977.1 PRUNE1 gene_id:58497|Hs108|chr1               (453 aa)
 initn: 2949 init1: 2949 opt: 2949  Z-score: 3142.3  bits: 590.7 E(32554): 1e-168
Smith-Waterman score: 2949; 100.0% identity (100.0% similar) in 453 aa overlap (1-453:1-453)

               10        20        30        40        50        60
pF1KB6 MEDYLQGCRAALQESRPLHVVLGNEACDLDSTVSALALAFYLAKTTEAEEVFVPVLNIKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 MEDYLQGCRAALQESRPLHVVLGNEACDLDSTVSALALAFYLAKTTEAEEVFVPVLNIKR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 SELPLRGDIVFFLQKVHIPESILIFRDEIDLHALYQAGQLTLILVDHHILSKSDTALEEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 SELPLRGDIVFFLQKVHIPESILIFRDEIDLHALYQAGQLTLILVDHHILSKSDTALEEA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 VAEVLDHRPIEPKHCPPCHVSVELVGSCATLVTERILQGAPEILDRQTAALLHGTIILDC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 VAEVLDHRPIEPKHCPPCHVSVELVGSCATLVTERILQGAPEILDRQTAALLHGTIILDC
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 VNMDLKIGKATPKDSKYVEKLEALFPDLPKRNDIFDSLQKAKFDVSGLTTEQMLRKDQKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 VNMDLKIGKATPKDSKYVEKLEALFPDLPKRNDIFDSLQKAKFDVSGLTTEQMLRKDQKT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 IYRQGVKVAISAIYMDLEAFLQRSNLLADLHAFCQAHSYDVLVAMTIFFNTHNEPVRQLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 IYRQGVKVAISAIYMDLEAFLQRSNLLADLHAFCQAHSYDVLVAMTIFFNTHNEPVRQLA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 IFCPHVALQTTICEVLERSHSPPLKLTPASSTHPNLHAYLQGNTQVSRKKLLPLLQEALS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 IFCPHVALQTTICEVLERSHSPPLKLTPASSTHPNLHAYLQGNTQVSRKKLLPLLQEALS
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB6 AYFDSMKIPSGQPETADVSREQVDKELDRASNSLISGLSQDEEDPPLPPTPMNSLVDECP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 AYFDSMKIPSGQPETADVSREQVDKELDRASNSLISGLSQDEEDPPLPPTPMNSLVDECP
              370       380       390       400       410       420

              430       440       450   
pF1KB6 LDQGLPKLSAEAVFEKCSQISLSQSTTASLSKK
       :::::::::::::::::::::::::::::::::
CCDS97 LDQGLPKLSAEAVFEKCSQISLSQSTTASLSKK
              430       440       450   

>>CCDS76211.1 PRUNE1 gene_id:58497|Hs108|chr1             (271 aa)
 initn: 1764 init1: 1764 opt: 1764  Z-score: 1884.1  bits: 357.1 E(32554): 1.3e-98
Smith-Waterman score: 1764; 100.0% identity (100.0% similar) in 271 aa overlap (183-453:1-271)

            160       170       180       190       200       210  
pF1KB6 TERILQGAPEILDRQTAALLHGTIILDCVNMDLKIGKATPKDSKYVEKLEALFPDLPKRN
                                     ::::::::::::::::::::::::::::::
CCDS76                               MDLKIGKATPKDSKYVEKLEALFPDLPKRN
                                             10        20        30

            220       230       240       250       260       270  
pF1KB6 DIFDSLQKAKFDVSGLTTEQMLRKDQKTIYRQGVKVAISAIYMDLEAFLQRSNLLADLHA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 DIFDSLQKAKFDVSGLTTEQMLRKDQKTIYRQGVKVAISAIYMDLEAFLQRSNLLADLHA
               40        50        60        70        80        90

            280       290       300       310       320       330  
pF1KB6 FCQAHSYDVLVAMTIFFNTHNEPVRQLAIFCPHVALQTTICEVLERSHSPPLKLTPASST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 FCQAHSYDVLVAMTIFFNTHNEPVRQLAIFCPHVALQTTICEVLERSHSPPLKLTPASST
              100       110       120       130       140       150

            340       350       360       370       380       390  
pF1KB6 HPNLHAYLQGNTQVSRKKLLPLLQEALSAYFDSMKIPSGQPETADVSREQVDKELDRASN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 HPNLHAYLQGNTQVSRKKLLPLLQEALSAYFDSMKIPSGQPETADVSREQVDKELDRASN
              160       170       180       190       200       210

            400       410       420       430       440       450  
pF1KB6 SLISGLSQDEEDPPLPPTPMNSLVDECPLDQGLPKLSAEAVFEKCSQISLSQSTTASLSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 SLISGLSQDEEDPPLPPTPMNSLVDECPLDQGLPKLSAEAVFEKCSQISLSQSTTASLSK
              220       230       240       250       260       270

        
pF1KB6 K
       :
CCDS76 K
        

>>CCDS78407.1 PRUNE2 gene_id:158471|Hs108|chr9            (3062 aa)
 initn: 718 init1: 325 opt: 441  Z-score: 461.0  bits: 97.3 E(32554): 2.3e-19
Smith-Waterman score: 734; 33.3% identity (66.5% similar) in 409 aa overlap (1-406:1-397)

               10           20        30        40        50       
pF1KB6 MEDYLQGCRAALQESRPL---HVVLGNEACDLDSTVSALALAFYLAKTTEAEEVFVPVLN
       ::..::  .. :..:. :   :::.: ..::::: .:... :..: :..    . .::::
CCDS78 MEEFLQRAKSKLNRSKRLEKVHVVIGPKSCDLDSLISTFTYAYFLDKVSPPGVLCLPVLN
               10        20        30        40        50        60

        60        70        80        90       100       110       
pF1KB6 IKRSELPLRGDIVFFLQKVHIPESILIFRDEIDLHALYQAGQLTLILVDHHILSKSDTAL
       : :.:.    .  :.:....: ::. ::::::.:: : . :.:.. ::   .:.. : .:
CCDS78 IPRTEFNYFTETRFILEELNISESFHIFRDEINLHQLNDEGKLSITLVGSSVLASEDKTL
               70        80        90       100       110       120

       120       130       140       150       160       170       
pF1KB6 EEAVAEVLDHRPIEPKHCPPCHVSVELVGSCATLVTERILQGAPEILDRQTAALLHGTII
       : ::..:..  :.: .      ..::.  : ..:: ..::: :::.. .: :  :.:.:.
CCDS78 ESAVVKVIN--PVEQSD-----ANVEFRESSSSLVLKEILQEAPELITEQLAHRLRGSIL
                130            140       150       160       170   

       180       190       200       210       220       230       
pF1KB6 LDCVNMDLKIGKATPKDSKYVEKLEALFPDLPKRNDIFDSLQKAKFDVSGLTTEQMLRKD
       .  ..:. .  : . :. . .  ::  ::.:: :.::.. ::...:...::. :: . ::
CCDS78 FKWMTMESE--KISEKQEEILSILEEKFPNLPPREDIINVLQETQFSAQGLSIEQTMLKD
           180         190       200       210       220       230 

       240       250       260       270       280       290       
pF1KB6 QKTIYRQGVKVAISAIYMDLEAFLQRSNLLADLHAFCQAHSYDVLVAMTIFFNTHNEPVR
        : .    .:::::.. :.::  : .::. .::.:: .  ..:::. .. ... ...: :
CCDS78 LKELSDGEIKVAISTVSMNLENCLFHSNITSDLKAFTDKFGFDVLILFSSYLSEEQQPRR
             240       250       260       270       280       290 

       300       310       320       330       340       350       
pF1KB6 QLAIFCPHVALQTTICEVLERSHSPPLKLTPASSTHPNLHAYLQGNTQVSRKKLLPLLQE
       :.:..  .. : . ::  ::. ..: :.: : .    .. .: : . .:.  ... ...:
CCDS78 QIAVYSENMELCSQICCELEECQNPCLELEPFDCGCDEILVYQQEDPSVTCDQVVLVVKE
             300       310       320       330       340       350 

       360       370       380       390       400       410       
pF1KB6 ALSAYFDSMKIPSGQPETADVSREQVDKELDRASNSLISGLSQDEEDPPLPPTPMNSLVD
       ...     :   :    :  :.    .  :...:....   ..: :  :           
CCDS78 VINRRCPEMVSNSRTSSTEAVAG---SAPLSQGSSGIMELYGSDIEPQPSSVNFIENPPD
             360       370          380       390       400        

       420       430       440       450                           
pF1KB6 ECPLDQGLPKLSAEAVFEKCSQISLSQSTTASLSKK                        
                                                                   
CCDS78 LNDSNQAQVDANVDLVSPDSGLATIRSSRSSKESSVFLSDDSPVGEGAGPHHTLLPGLDS
      410       420       430       440       450       460        

>>CCDS47982.1 PRUNE2 gene_id:158471|Hs108|chr9            (3088 aa)
 initn: 718 init1: 325 opt: 441  Z-score: 461.0  bits: 97.3 E(32554): 2.4e-19
Smith-Waterman score: 734; 33.3% identity (66.5% similar) in 409 aa overlap (1-406:1-397)

               10           20        30        40        50       
pF1KB6 MEDYLQGCRAALQESRPL---HVVLGNEACDLDSTVSALALAFYLAKTTEAEEVFVPVLN
       ::..::  .. :..:. :   :::.: ..::::: .:... :..: :..    . .::::
CCDS47 MEEFLQRAKSKLNRSKRLEKVHVVIGPKSCDLDSLISTFTYAYFLDKVSPPGVLCLPVLN
               10        20        30        40        50        60

        60        70        80        90       100       110       
pF1KB6 IKRSELPLRGDIVFFLQKVHIPESILIFRDEIDLHALYQAGQLTLILVDHHILSKSDTAL
       : :.:.    .  :.:....: ::. ::::::.:: : . :.:.. ::   .:.. : .:
CCDS47 IPRTEFNYFTETRFILEELNISESFHIFRDEINLHQLNDEGKLSITLVGSSVLASEDKTL
               70        80        90       100       110       120

       120       130       140       150       160       170       
pF1KB6 EEAVAEVLDHRPIEPKHCPPCHVSVELVGSCATLVTERILQGAPEILDRQTAALLHGTII
       : ::..:..  :.: .      ..::.  : ..:: ..::: :::.. .: :  :.:.:.
CCDS47 ESAVVKVIN--PVEQSD-----ANVEFRESSSSLVLKEILQEAPELITEQLAHRLRGSIL
                130            140       150       160       170   

       180       190       200       210       220       230       
pF1KB6 LDCVNMDLKIGKATPKDSKYVEKLEALFPDLPKRNDIFDSLQKAKFDVSGLTTEQMLRKD
       .  ..:. .  : . :. . .  ::  ::.:: :.::.. ::...:...::. :: . ::
CCDS47 FKWMTMESE--KISEKQEEILSILEEKFPNLPPREDIINVLQETQFSAQGLSIEQTMLKD
           180         190       200       210       220       230 

       240       250       260       270       280       290       
pF1KB6 QKTIYRQGVKVAISAIYMDLEAFLQRSNLLADLHAFCQAHSYDVLVAMTIFFNTHNEPVR
        : .    .:::::.. :.::  : .::. .::.:: .  ..:::. .. ... ...: :
CCDS47 LKELSDGEIKVAISTVSMNLENCLFHSNITSDLKAFTDKFGFDVLILFSSYLSEEQQPRR
             240       250       260       270       280       290 

       300       310       320       330       340       350       
pF1KB6 QLAIFCPHVALQTTICEVLERSHSPPLKLTPASSTHPNLHAYLQGNTQVSRKKLLPLLQE
       :.:..  .. : . ::  ::. ..: :.: : .    .. .: : . .:.  ... ...:
CCDS47 QIAVYSENMELCSQICCELEECQNPCLELEPFDCGCDEILVYQQEDPSVTCDQVVLVVKE
             300       310       320       330       340       350 

       360       370       380       390       400       410       
pF1KB6 ALSAYFDSMKIPSGQPETADVSREQVDKELDRASNSLISGLSQDEEDPPLPPTPMNSLVD
       ...     :   :    :  :.    .  :...:....   ..: :  :           
CCDS47 VINRRCPEMVSNSRTSSTEAVAG---SAPLSQGSSGIMELYGSDIEPQPSSVNFIENPPD
             360       370          380       390       400        

       420       430       440       450                           
pF1KB6 ECPLDQGLPKLSAEAVFEKCSQISLSQSTTASLSKK                        
                                                                   
CCDS47 LNDSNQAQVDANVDLVSPDSGLATIRSSRSSKESSVFLSDDSPVGEGAGPHHTLLPGLDS
      410       420       430       440       450       460        




453 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 11:42:13 2016 done: Sat Nov  5 11:42:14 2016
 Total Scan time:  3.360 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]
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