Result of FASTA (ccds) for pF1KB6792
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6792, 155 aa
  1>>>pF1KB6792 155 - 155 aa - 155 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2279+/-0.000674; mu= 12.0475+/- 0.041
 mean_var=55.8541+/-11.508, 0's: 0 Z-trim(109.4): 19  B-trim: 172 in 1/51
 Lambda= 0.171612
 statistics sampled from 10832 (10851) to 10832 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.734), E-opt: 0.2 (0.333), width:  16
 Scan time:  1.850

The best scores are:                                      opt bits E(32554)
CCDS2111.1 IL36RN gene_id:26525|Hs108|chr2         ( 155) 1060 269.9 4.4e-73
CCDS2115.1 IL1RN gene_id:3557|Hs108|chr2           ( 143)  414 109.9 5.8e-25
CCDS2113.1 IL1RN gene_id:3557|Hs108|chr2           ( 159)  414 110.0 6.3e-25
CCDS46396.1 IL1RN gene_id:3557|Hs108|chr2          ( 177)  414 110.0   7e-25
CCDS2114.1 IL1RN gene_id:3557|Hs108|chr2           ( 180)  414 110.0 7.1e-25
CCDS2112.1 IL1F10 gene_id:84639|Hs108|chr2         ( 152)  365 97.8 2.7e-21
CCDS2110.1 IL36B gene_id:27177|Hs108|chr2          ( 157)  260 71.8 1.9e-13
CCDS42734.1 IL36A gene_id:27179|Hs108|chr2         ( 158)  245 68.1 2.5e-12
CCDS62992.1 IL36G gene_id:56300|Hs108|chr2         ( 134)  230 64.4 2.8e-11
CCDS2108.1 IL36G gene_id:56300|Hs108|chr2          ( 169)  230 64.4 3.5e-11
CCDS2107.1 IL37 gene_id:27178|Hs108|chr2           ( 192)  229 64.2 4.6e-11
CCDS2104.1 IL37 gene_id:27178|Hs108|chr2           ( 197)  229 64.2 4.7e-11
CCDS2103.1 IL37 gene_id:27178|Hs108|chr2           ( 218)  229 64.2 5.2e-11


>>CCDS2111.1 IL36RN gene_id:26525|Hs108|chr2              (155 aa)
 initn: 1060 init1: 1060 opt: 1060  Z-score: 1425.5  bits: 269.9 E(32554): 4.4e-73
Smith-Waterman score: 1060; 100.0% identity (100.0% similar) in 155 aa overlap (1-155:1-155)

               10        20        30        40        50        60
pF1KB6 MVLSGALCFRMKDSALKVLYLHNNQLLAGGLHAGKVIKGEEISVVPNRWLDASLSPVILG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 MVLSGALCFRMKDSALKVLYLHNNQLLAGGLHAGKVIKGEEISVVPNRWLDASLSPVILG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 VQGGSQCLSCGVGQEPTLTLEPVNIMELYLGAKESKSFTFYRRDMGLTSSFESAAYPGWF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 VQGGSQCLSCGVGQEPTLTLEPVNIMELYLGAKESKSFTFYRRDMGLTSSFESAAYPGWF
               70        80        90       100       110       120

              130       140       150     
pF1KB6 LCTVPEADQPVRLTQLPENGGWNAPITDFYFQQCD
       :::::::::::::::::::::::::::::::::::
CCDS21 LCTVPEADQPVRLTQLPENGGWNAPITDFYFQQCD
              130       140       150     

>>CCDS2115.1 IL1RN gene_id:3557|Hs108|chr2                (143 aa)
 initn: 410 init1: 242 opt: 414  Z-score: 561.7  bits: 109.9 E(32554): 5.8e-25
Smith-Waterman score: 414; 49.3% identity (70.9% similar) in 148 aa overlap (9-153:4-141)

               10        20        30        40        50          
pF1KB6 MVLSGALCFRMKDSALKVLYLHNNQLLAGGLHAGKVIKGEEISVVPNRWLDASLSP--VI
               ::. :   :..::.::::.:: :.. .:   :.:.:::       . :  ..
CCDS21      MQAFRIWDVNQKTFYLRNNQLVAGYLQGPNVNLEEKIDVVP-------IEPHALF
                    10        20        30        40               

       60        70         80        90       100       110       
pF1KB6 LGVQGGSQCLSC-GVGQEPTLTLEPVNIMELYLGAKESKSFTFYRRDMGLTSSFESAAYP
       ::..::..::::   :.:  : :: ::: .:  . :..: :.: : : : :.:::::: :
CCDS21 LGIHGGKMCLSCVKSGDETRLQLEAVNITDLSENRKQDKRFAFIRSDSGPTTSFESAACP
       50        60        70        80        90       100        

       120       130       140       150     
pF1KB6 GWFLCTVPEADQPVRLTQLPENGGWNAPITDFYFQQCD
       ::::::. :::::: ::..:..:   . .: ::::.  
CCDS21 GWFLCTAMEADQPVSLTNMPDEG---VMVTKFYFQEDE
      110       120       130          140   

>>CCDS2113.1 IL1RN gene_id:3557|Hs108|chr2                (159 aa)
 initn: 410 init1: 242 opt: 414  Z-score: 560.9  bits: 110.0 E(32554): 6.3e-25
Smith-Waterman score: 414; 49.3% identity (70.9% similar) in 148 aa overlap (9-153:20-157)

                          10        20        30        40         
pF1KB6            MVLSGALCFRMKDSALKVLYLHNNQLLAGGLHAGKVIKGEEISVVPNRW
                          ::. :   :..::.::::.:: :.. .:   :.:.:::   
CCDS21 MALETICRPSGRKSSKMQAFRIWDVNQKTFYLRNNQLVAGYLQGPNVNLEEKIDVVP---
               10        20        30        40        50          

      50          60        70         80        90       100      
pF1KB6 LDASLSP--VILGVQGGSQCLSC-GVGQEPTLTLEPVNIMELYLGAKESKSFTFYRRDMG
           . :  ..::..::..::::   :.:  : :: ::: .:  . :..: :.: : : :
CCDS21 ----IEPHALFLGIHGGKMCLSCVKSGDETRLQLEAVNITDLSENRKQDKRFAFIRSDSG
            60        70        80        90       100       110   

        110       120       130       140       150     
pF1KB6 LTSSFESAAYPGWFLCTVPEADQPVRLTQLPENGGWNAPITDFYFQQCD
        :.:::::: :::::::. :::::: ::..:..:   . .: ::::.  
CCDS21 PTTSFESAACPGWFLCTAMEADQPVSLTNMPDEG---VMVTKFYFQEDE
           120       130       140          150         

>>CCDS46396.1 IL1RN gene_id:3557|Hs108|chr2               (177 aa)
 initn: 410 init1: 242 opt: 414  Z-score: 560.2  bits: 110.0 E(32554): 7e-25
Smith-Waterman score: 414; 49.3% identity (70.9% similar) in 148 aa overlap (9-153:38-175)

                                     10        20        30        
pF1KB6                       MVLSGALCFRMKDSALKVLYLHNNQLLAGGLHAGKVIK
                                     ::. :   :..::.::::.:: :.. .:  
CCDS46 RSHLITLLLFLFHSETICRPSGRKSSKMQAFRIWDVNQKTFYLRNNQLVAGYLQGPNVNL
        10        20        30        40        50        60       

       40        50          60        70         80        90     
pF1KB6 GEEISVVPNRWLDASLSP--VILGVQGGSQCLSC-GVGQEPTLTLEPVNIMELYLGAKES
        :.:.:::       . :  ..::..::..::::   :.:  : :: ::: .:  . :..
CCDS46 EEKIDVVP-------IEPHALFLGIHGGKMCLSCVKSGDETRLQLEAVNITDLSENRKQD
        70               80        90       100       110       120

         100       110       120       130       140       150     
pF1KB6 KSFTFYRRDMGLTSSFESAAYPGWFLCTVPEADQPVRLTQLPENGGWNAPITDFYFQQCD
       : :.: : : : :.:::::: :::::::. :::::: ::..:..:   . .: ::::.  
CCDS46 KRFAFIRSDSGPTTSFESAACPGWFLCTAMEADQPVSLTNMPDEG---VMVTKFYFQEDE
              130       140       150       160          170       

>>CCDS2114.1 IL1RN gene_id:3557|Hs108|chr2                (180 aa)
 initn: 410 init1: 242 opt: 414  Z-score: 560.1  bits: 110.0 E(32554): 7.1e-25
Smith-Waterman score: 414; 49.3% identity (70.9% similar) in 148 aa overlap (9-153:41-178)

                                     10        20        30        
pF1KB6                       MVLSGALCFRMKDSALKVLYLHNNQLLAGGLHAGKVIK
                                     ::. :   :..::.::::.:: :.. .:  
CCDS21 GGGGGEGEDNADSKETICRPSGRKSSKMQAFRIWDVNQKTFYLRNNQLVAGYLQGPNVNL
               20        30        40        50        60        70

       40        50          60        70         80        90     
pF1KB6 GEEISVVPNRWLDASLSP--VILGVQGGSQCLSC-GVGQEPTLTLEPVNIMELYLGAKES
        :.:.:::       . :  ..::..::..::::   :.:  : :: ::: .:  . :..
CCDS21 EEKIDVVP-------IEPHALFLGIHGGKMCLSCVKSGDETRLQLEAVNITDLSENRKQD
                      80        90       100       110       120   

         100       110       120       130       140       150     
pF1KB6 KSFTFYRRDMGLTSSFESAAYPGWFLCTVPEADQPVRLTQLPENGGWNAPITDFYFQQCD
       : :.: : : : :.:::::: :::::::. :::::: ::..:..:   . .: ::::.  
CCDS21 KRFAFIRSDSGPTTSFESAACPGWFLCTAMEADQPVSLTNMPDEG---VMVTKFYFQEDE
           130       140       150       160          170       180

>>CCDS2112.1 IL1F10 gene_id:84639|Hs108|chr2              (152 aa)
 initn: 342 init1: 210 opt: 365  Z-score: 495.7  bits: 97.8 E(32554): 2.7e-21
Smith-Waterman score: 365; 43.8% identity (68.8% similar) in 144 aa overlap (11-153:12-150)

                10        20        30        40        50         
pF1KB6  MVLSGALCFRMKDSALKVLYLHNNQLLAGGLHAGKVIKGEEISVVPNRWLDASLSPVIL
                  .: .  :.:: ...:::.:   : .   .:.: ..::: :  .  :..:
CCDS21 MCSLPMARYYIIKYADQKALYTRDGQLLVGDPVADNCC-AEKICILPNRGLARTKVPIFL
               10        20        30         40        50         

      60        70         80        90       100       110        
pF1KB6 GVQGGSQCLSCGVGQE-PTLTLEPVNIMELYLGAKESKSFTFYRRDMGLTSSFESAAYPG
       :.::::.::.:   .: :.: :: ::: ::: :..:.  :::.. . : .  .:.::.::
CCDS21 GIQGGSRCLACVETEEGPSLQLEDVNIEELYKGGEEATRFTFFQSSSGSAFRLEAAAWPG
      60        70        80        90       100       110         

      120       130       140       150     
pF1KB6 WFLCTVPEADQPVRLTQLPENGGWNAPITDFYFQQCD
       ::::   : .:::.::.  : ..     : :::.:  
CCDS21 WFLCGPAEPQQPVQLTKESEPSAR----TKFYFEQSW
     120       130       140           150  

>>CCDS2110.1 IL36B gene_id:27177|Hs108|chr2               (157 aa)
 initn: 224 init1: 187 opt: 260  Z-score: 355.0  bits: 71.8 E(32554): 1.9e-13
Smith-Waterman score: 260; 35.7% identity (59.7% similar) in 154 aa overlap (9-155:12-157)

                  10        20        30        40        50       
pF1KB6    MVLSGALCFRMKDSALKVLYLHNNQLLAGGLHAGKVIKGEEISVVPNRWLDASLSP-
                  . ..::   :  : .:.:.:. :  .. ::   . ..  :  :. .:  
CCDS21 MNPQREAAPKSYAIRDSRQMVWVLSGNSLIAAPL--SRSIKPVTLHLIACR--DTEFSDK
               10        20        30          40          50      

              60        70         80        90       100       110
pF1KB6 -----VILGVQGGSQCLSCGVGQ-EPTLTLEPVNIMELYLGAKESKSFTFYRRDMGLTSS
            : ::..: . :: :.  : .::: :.  :::.::.  : .: : :..   : :: 
CCDS21 EKGNMVYLGIKGKDLCLFCAEIQGKPTLQLKEKNIMDLYVEKKAQKPFLFFHNKEGSTSV
         60        70        80        90       100       110      

              120       130       140       150     
pF1KB6 FESAAYPGWFLCTVPEADQPVRLTQLPENGGWNAPITDFYFQQCD
       :.:..:::::. :   . ::. ::.  : :  :   :.::... .
CCDS21 FQSVSYPGWFIATSTTSGQPIFLTK--ERGITNN--TNFYLDSVE
        120       130       140           150       

>>CCDS42734.1 IL36A gene_id:27179|Hs108|chr2              (158 aa)
 initn: 224 init1: 192 opt: 245  Z-score: 334.9  bits: 68.1 E(32554): 2.5e-12
Smith-Waterman score: 245; 44.8% identity (68.8% similar) in 96 aa overlap (55-149:61-152)

           30        40        50        60        70         80   
pF1KB6 QLLAGGLHAGKVIKGEEISVVPNRWLDASLSPVILGVQGGSQCLSCG-VGQEPTLTLEPV
                                     .:. ::..: . :: :. ::..::: :.  
CCDS42 IAVPRKDRMSPVTIALISCRHVETLEKDRGNPIYLGLNGLNLCLMCAKVGDQPTLQLKEK
               40        50        60        70        80        90

            90       100       110       120       130       140   
pF1KB6 NIMELYLGAKESKSFTFYRRDMGLTSSFESAAYPGWFLCTVPEADQPVRLTQLPENGGWN
       .::.::   .  ::: ::. . : .:.:::.:.::::. .  :.  :. :::  : :  .
CCDS42 DIMDLYNQPEPVKSFLFYHSQSGRNSTFESVAFPGWFIAVSSEGGCPLILTQ--ELG--K
              100       110       120       130       140          

           150     
pF1KB6 APITDFYFQQCD
       :  :::      
CCDS42 ANTTDFGLTMLF
        150        

>>CCDS62992.1 IL36G gene_id:56300|Hs108|chr2              (134 aa)
 initn: 217 init1: 160 opt: 230  Z-score: 315.9  bits: 64.4 E(32554): 2.8e-11
Smith-Waterman score: 230; 45.0% identity (67.5% similar) in 80 aa overlap (56-134:39-117)

          30        40        50        60        70         80    
pF1KB6 LLAGGLHAGKVIKGEEISVVPNRWLDASLSPVILGVQGGSQCLSC-GVGQEPTLTLEPVN
                                     :. ::.:.  .:: :  ::..::: :.  .
CCDS62 DGGGRAVYQSITVAVITCKYPEALEQGRGDPIYLGIQNPEMCLYCEKVGEQPTLQLKEQK
       10        20        30        40        50        60        

           90       100       110       120       130       140    
pF1KB6 IMELYLGAKESKSFTFYRRDMGLTSSFESAAYPGWFLCTVPEADQPVRLTQLPENGGWNA
       ::.::   .  : : :::   : ::..::.:.: ::. .  . :::. ::          
CCDS62 IMDLYGQPEPVKPFLFYRAKTGRTSTLESVAFPDWFIAS-SKRDQPIILTSELGKSYNTA
       70        80        90       100        110       120       

          150     
pF1KB6 PITDFYFQQCD
                  
CCDS62 FELNIND    
       130        

>>CCDS2108.1 IL36G gene_id:56300|Hs108|chr2               (169 aa)
 initn: 217 init1: 160 opt: 230  Z-score: 314.3  bits: 64.4 E(32554): 3.5e-11
Smith-Waterman score: 230; 45.0% identity (67.5% similar) in 80 aa overlap (56-134:74-152)

          30        40        50        60        70         80    
pF1KB6 LLAGGLHAGKVIKGEEISVVPNRWLDASLSPVILGVQGGSQCLSC-GVGQEPTLTLEPVN
                                     :. ::.:.  .:: :  ::..::: :.  .
CCDS21 AVPRSDSVTPVTVAVITCKYPEALEQGRGDPIYLGIQNPEMCLYCEKVGEQPTLQLKEQK
            50        60        70        80        90       100   

           90       100       110       120       130       140    
pF1KB6 IMELYLGAKESKSFTFYRRDMGLTSSFESAAYPGWFLCTVPEADQPVRLTQLPENGGWNA
       ::.::   .  : : :::   : ::..::.:.: ::. .  . :::. ::          
CCDS21 IMDLYGQPEPVKPFLFYRAKTGRTSTLESVAFPDWFIAS-SKRDQPIILTSELGKSYNTA
           110       120       130       140        150       160  

          150     
pF1KB6 PITDFYFQQCD
                  
CCDS21 FELNIND    
                  




155 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 18:18:11 2016 done: Sat Nov  5 18:18:11 2016
 Total Scan time:  1.850 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com