GENSCAN 1.0	Date run:  6-Nov-116	Time: 02:11:22

Sequence gi568815583r:63226288_63481720 : 255433 bp : 44.29% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   7902   7929   28  2  1   84   77    29 0.176   1.17
 1.02 Intr +  18469  18529   61  2  1  102  115   -15 0.031   0.39
 1.03 Intr +  23358  23418   61  0  1   95  101    33 0.040   4.04
 1.04 Intr +  29220  29297   78  2  0   90   87    69 0.853   6.75
 1.05 Intr +  30218  30307   90  1  0   95   94    62 0.973   7.69
 1.06 Intr +  33340  33405   66  0  0   95   94    55 0.889   5.90
 1.07 Term +  43599  43811  213  2  0   96   44    43 0.316  -2.07
 1.08 PlyA +  45282  45287    6                               1.05

 2.00 Prom +  50726  50765   40                              -5.26
 2.01 Init +  50913  50994   82  2  1   99   70   156 0.935  14.03
 2.02 Intr +  51245  51449  205  0  1   52   76   228 0.910  16.26
 2.03 Intr +  52874  53044  171  2  0   99  106    60 0.945   7.96
 2.04 Intr +  60271  60341   71  1  2   70  115    41 0.798   3.83
 2.05 Intr +  76058  76185  128  0  2   72  109    91 0.666  10.00
 2.06 Term +  79327  79494  168  0  0  114   37    44 0.508  -0.22
 2.07 PlyA +  79597  79602    6                               1.05

 3.15 PlyA -  80193  80188    6                               1.05
 3.14 Term -  83449  83198  252  1  0   89   32   126 0.310   2.74
 3.13 Intr -  95429  95230  200  0  2   67   95   108 0.851   8.47
 3.12 Intr - 112658 112532  127  2  1   87  100   117 0.975  13.05
 3.11 Intr - 114158 114001  158  0  2  100   93   199 0.999  21.33
 3.10 Intr - 114496 114433   64  1  1  127  100    60 0.867   9.39
 3.09 Intr - 115810 115715   96  1  0   76   94    97 0.998   9.31
 3.08 Intr - 119332 119190  143  2  2   94  107   255 0.999  28.07
 3.07 Intr - 120422 120243  180  0  0   64   94   221 0.999  20.14
 3.06 Intr - 127388 127272  117  0  0   53   79    54 0.131   1.44
 3.05 Intr - 133651 133577   75  2  0   28   84    92 0.132   2.29
 3.04 Intr - 142083 141965  119  2  2  134   24    63 0.438   4.61
 3.03 Intr - 142539 142368  172  1  1   21   94    95 0.324   2.40
 3.02 Intr - 149391 149371   21  1  0  118  111    -5 0.220   2.32
 3.01 Init - 155433 155349   85  0  1   91   55   148 0.222  10.91
 3.00 Prom - 165170 165131   40                              -3.66

 4.00 Prom + 168275 168314   40                              -5.96
 4.01 Init + 169340 169394   55  1  1  100   96     0 0.374   1.64
 4.02 Term + 186855 187063  209  1  2   84   42   121 0.476   4.60
 4.03 PlyA + 191361 191366    6                               1.05

 5.00 Prom + 201566 201605   40                              -2.06
 5.01 Init + 219179 219241   63  1  0   80   96    35 0.931   2.69
 5.02 Term + 219279 219368   90  2  0  134   53    53 0.461   4.12
 5.03 PlyA + 219789 219794    6                               1.05

 6.05 PlyA - 220591 220586    6                               1.05
 6.04 Term - 230505 230262  244  2  1   62   42   183 0.147   6.47
 6.03 Intr - 234881 234751  131  2  2  113   82    -7 0.067   0.69
 6.02 Intr - 247788 247678  111  0  0   62   26    96 0.275   1.38
 6.01 Intr - 254852 254680  173  0  2  111   64    66 0.195   6.16

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815583r:63226288_63481720|GENSCAN_predicted_peptide_1|198_aa
MHQVTAYAEGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITN
EKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSA
KSSANVEEVGHVLIPGTSECYFIWQKGLCRGDRVKDHEMGDYLDPSGPNVILGVLLMRGQ
EESEESHVMMDAEGEKVL

>gi568815583r:63226288_63481720|GENSCAN_predicted_CDS_1|597_bp
atgcatcaagtcacagcttatgctgaaggaattgattttaaaattagaacgatagaacta
gatggaaagaaaattaagcttcagatatgggacacagcgggtcaggaaagattccgaaca
atcacgacagcgtactacagaggagccatgggcattatgctggtctatgacatcacaaat
gaaaaatcctttgacaatattaaaaattggatcagaaacattgaagagcatgcctcttcc
gatgtcgaaagaatgatcctgggtaacaaatgtgatatgaatgacaaaagacaagtgtca
aaagaaagaggggagaagctagcaattgactatgggattaaattcttggagacaagcgca
aaatccagtgcaaatgtagaagaggttggtcatgtcttaatccccggaacctctgaatgt
tactttatatggcaaaaaggactttgcagaggggatcgagttaaggatcatgagatggga
gattatcttgatccaagtggacccaatgtaatcctaggggtccttctcatgagaggacag
gaagagtcagaagaaagccacgtgatgatggacgcagagggagaaaaggtgctgtga

>gi568815583r:63226288_63481720|GENSCAN_predicted_peptide_2|274_aa
MAGALTSPRTPASGAGAAAWPWRFRTPAPHPEPHPPNPARAGSISRPQRAPGSVSAVAMT
AAVFFGCAFIAFGPALALYVFTIATEPLRIIFLIAGAFFWLVSLLISSLVWFMARVIIDN
KDGPTQKYLLIFGAFVSVYIQEMFRFAYYKLLKKASEGLKSINPGETAPSMRLLAYAFMT
LVIILLHVFWGIVFFDGCEKKKWGILLIVLLTHLLVSAQTFISSYYGINLASAFIILVLM
GTWAFLAAGGSCRSLKLCLLCQDKNFLLYNQRSR

>gi568815583r:63226288_63481720|GENSCAN_predicted_CDS_2|825_bp
atggctggggccctaacgtcgccgaggacgcccgcctcgggagcaggagctgcggcgtgg
ccctggcgcttccggacacccgccccccaccccgagccccacccaccgaaccccgcccgc
gccgggagcatctcgcgtccccaacgggcccccgggtcggtttccgcggtggccatgact
gcggccgtgttcttcggctgcgccttcattgccttcgggcctgcgctcgccctttatgtc
ttcaccatcgccaccgagccgttgcgtatcatcttcctcatcgccggagctttcttctgg
ttggtgtctctactgatttcgtcccttgtttggttcatggcaagagtcattattgacaac
aaagatggaccaacacagaaatatctgctgatctttggagcgtttgtctctgtctatatc
caagaaatgttccgatttgcatattataaactcttaaaaaaagccagtgaaggtttgaag
agtataaacccaggtgagacagcaccctctatgcgactgctggcctatgctttcatgacg
ctggtcattatcttgctgcatgtattctggggcattgtattttttgatggctgtgagaag
aaaaagtggggcatcctccttatcgttctcctgacccacctgctggtgtcagcccagacc
ttcataagttcttattatggaataaacctggcgtcagcatttataatcctggtgctcatg
ggcacctgggcattcttagctgcgggaggcagctgccgaagcctgaaactctgcctgctc
tgccaagacaagaactttcttctttacaaccagcgctccagataa

>gi568815583r:63226288_63481720|GENSCAN_predicted_peptide_3|602_aa
MPRRSLHAAAVLLLVILKEQPSSPAPVNGSKWTYFAPFSHWGSIKPWNRRCSGLAGEEEG
RAVGLSCQGLSGLWLCSDLTILLPAGLEPRAFRGNCWAKGAGTTVERRHHGQSLPGATPP
GQEREIAPATVKGATEELSAENCLDLVCTVVESGELEDGFRGDMKSAVPSESCGLAVFSV
ALATRAGLLDDPQREAGPDGENSWSKKYPSCGGLLQSPIDLHSDILQYDASLTPLEFQGY
NLSANKQFLLTNNGHSVKLNLPSDMHIQGLQSRYSATQLHLHWGNPNDPHGSEHTVSGQH
FAAELHIVHYNSDLYPDASTASNKSEGLAVLAVLIEMGSFNPSYDKIFSHLQHVKYKGQE
AFVPGFNIEELLPERTAEYYRYRGSLTTPPCNPTVLWTVFRNPVQISQEQLLALETALYC
THMDDPSPREMINNFRQVQKFDERLVYTSFSQGVPLPLSRGLPAGYLEQLQPRFRKETGP
LGHRDHLPVRSSRAAIHTGDRPARGPRARIQLSQDVRGKVRSKEPLGPENVSSNNVINIA
CNSLISSQSEQASNGFEYRIIIPYVSCLMARAKLNPLAALSPHQGKEREKDSIGYSESPG
KS

>gi568815583r:63226288_63481720|GENSCAN_predicted_CDS_3|1809_bp
atgccccggcgcagcctgcacgcggcggccgtgctcctgctggtgatcttaaaggaacag
ccttccagcccggccccagtgaacggttccaagtggacttattttgcgcccttttcccac
tggggcagcatcaagccttggaaccgcaggtgcagcgggctggcaggtgaggaggaagga
cgagctgtggggctgtcctgccagggcctttcaggcctctggctgtgctccgacttgacc
attctgctacctgctggtcttgagccccgggcattcaggggcaactgctgggcgaagggt
gcaggcaccacggtggagcgcaggcaccatggccagtctcttccaggggccacaccacca
ggccaagaaagagagatagcacctgctacagtcaaaggagccactgaagaactttcagca
gagaactgtctggatctggtgtgcactgttgtggagagtggagagctggaggatggattt
agaggggacatgaagtctgcggtcccctctgagtcctgtggcttagctgtgttctctgtg
gctctagccacaagagcgggactgttggatgacccccagagagaggcaggtcctgatggg
gagaatagctggtccaagaagtacccgtcgtgtgggggcctgctgcagtcccccatagac
ctgcacagtgacatcctccagtatgacgccagcctcacgcccctcgagttccaaggctac
aatctgtctgccaacaagcagtttctcctgaccaacaatggccattcagtgaagctgaac
ctgccctcggacatgcacatccagggcctccagtctcgctacagtgccacgcagctgcac
ctgcactgggggaacccgaatgacccgcacggctctgagcacaccgtcagcggacagcac
ttcgccgccgagctgcacattgtccattataactcagacctttatcctgacgccagcact
gccagcaacaagtcagaaggcctcgctgtcctggctgttctcattgagatgggctccttc
aatccgtcctatgacaagatcttcagtcaccttcaacatgtaaagtacaaaggccaggaa
gcattcgtcccgggattcaacattgaagagctgcttccggagaggaccgctgaatattac
cgctaccgggggtccctgaccacacccccttgcaaccccactgtgctctggacagttttc
cgaaaccccgtgcaaatttcccaggagcagctgctggctttggagacagccctgtactgc
acacacatggacgacccttcccccagagaaatgatcaacaacttccggcaggtccagaag
ttcgatgagaggctggtatacacctccttctcccaaggagtgcccctcccgttgtcacgt
ggccttcctgctgggtatctggagcagttgcagcctcgcttccggaaggaaacggggcct
ctggggcacagggaccacctgccagtgcgttccagccgggctgccatccacactggagac
cgccccgcacgtggtcctcgggctcggattcagctgtcgcaggatgtgaggggaaaggtt
agaagcaaagagcccttgggacctgagaacgtttcatccaataacgtcatcaacatagcc
tgcaacagcctcatttcaagccagagtgaacaagcatcaaatggttttgagtatcgtatc
ataatcccctatgtatcctgtctgatggcaagggccaagctcaaccctttagctgcactg
tctcctcaccaagggaaagaaagagaaaaggactctataggctactcagaatcaccaggt
aaaagctaa

>gi568815583r:63226288_63481720|GENSCAN_predicted_peptide_4|87_aa
MARAHLDRGGAGVLIPDTARGKAREMQRVPNKDLSCPDLGLMLPLYLALPANGRPPLLKD
KGRGFGHLRPSDISGPSEKLQCRIQRD

>gi568815583r:63226288_63481720|GENSCAN_predicted_CDS_4|264_bp
atggcgagagcacacctggacaggggaggggcaggagttctgattcctgacacagcgagg
ggcaaagccagagaaatgcagagggtgccgaacaaggacctcagctgccctgatctgggg
ttgatgctgcctttgtacttagcactgcctgccaatggcaggccacctctgctgaaagac
aagggcagagggtttggccaccttaggcctagcgacatctctggacccagtgagaaactc
caatgtcgaattcagagggactga

>gi568815583r:63226288_63481720|GENSCAN_predicted_peptide_5|50_aa
MLWGQLLTRLYLIPRCSLGLRVLLSLLYLLMEQYQKQVRKRIKCERGTKL

>gi568815583r:63226288_63481720|GENSCAN_predicted_CDS_5|153_bp
atgctctggggccagcttctcaccaggctgtatttgatcccaagatgcagcctggggttg
agggtcctgctcagcttgctttatctcttgatggagcagtaccagaagcaggttagaaaa
agaatcaagtgtgagagaggaacaaagctctga

>gi568815583r:63226288_63481720|GENSCAN_predicted_peptide_6|219_aa
XSPQTLALWDLIQSQSFTPGSSYEKPGRPSKQRAKRNIPKQPEWALALCPPPLRHQTTAG
EMDRFWRCQNEQKEEEEEAVASSSVNPKSSGSQSKGGPAVTFFYGSDAAEVSTYPKLLQD
VTDETAGSPKDQTLGSHKSIQELDAYMMQSTVAEHLLSLGSQTLPATEQMTGKPSPLAVI
IPERSSGVPAIFRLNIYTRKAHNYHEHKTWECHGVTIEV

>gi568815583r:63226288_63481720|GENSCAN_predicted_CDS_6|660_bp
ngctcccctcagacacttgcactctgggacttgattcaaagccagtcatttaccccaggc
agcagctatgagaaaccaggtagaccctccaagcaacgagctaagagaaacatccccaaa
caaccagaatgggccctcgcactgtgccctcctcctctcagacaccagacaacggcaggt
gaaatggatcggttttggagatgtcaaaatgaacagaaagaggaggaggaggaggcagta
gcatcatcttctgttaaccccaagagcagtggttctcagagcaagggaggccccgcagta
acattcttttatgggtcagatgctgctgaggtttcaacctatcccaaactgttgcaggat
gtaactgacgaaactgcaggctccccaaaggatcagacactagggagccacaaaagtatc
caagagctggatgcctacatgatgcagtccacagtggctgagcaccttctgtccctggga
tctcagactctgcctgccacagagcagatgactggaaaaccctccccacttgctgtcatc
attcctgaaaggtcttcaggtgtgccagcaattttcagactgaatatctacaccagaaaa
gcacataactaccatgagcataagacgtgggagtgccatggagtgaccatagaagtatag