GENSCAN 1.0	Date run:  6-Nov-116	Time: 22:51:42

Sequence gi568815586r:110811080_111019194 : 208115 bp : 46.92% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.04 Intr -    939    697  243  0  0  117   76    84 0.075   7.79
 1.03 Intr -   5679   5637   43  2  1   79   68    29 0.001  -1.76
 1.02 Intr -  15806  15731   76  0  1   57   67    80 0.015   1.37
 1.01 Init -  30865  30634  232  1  1   77   69   357 0.691  31.12
 1.00 Prom -  34231  34192   40                              -5.86

 2.00 Prom +  34386  34425   40                             -11.72
 2.01 Init +  35003  35033   31  1  1   62  115    -6 0.419  -0.53
 2.02 Intr +  35817  36026  210  1  0   77  119   139 0.362  14.78
 2.03 Intr +  37661  37881  221  0  2   49   99    -9 0.154  -5.68
 2.04 Intr +  42326  42495  170  1  2  102   86   182 0.969  18.14
 2.05 Intr +  47507  47696  190  2  1   50   70   211 0.171  15.09
 2.06 Intr +  59599  59682   84  0  0   71   63    47 0.112   0.52
 2.07 Intr +  62763  62882  120  2  0  111   46    39 0.260   2.69
 2.08 Intr +  68827  69008  182  0  2   52   64   313 0.648  23.97
 2.09 Intr +  70036  70217  182  1  2   72   81   379 0.173  35.11
 2.10 Intr +  72951  73171  221  1  2   84   71   405 0.875  36.42
 2.11 Intr +  81997  82071   75  0  0   66   78    58 0.245   2.31
 2.12 Intr +  87830  88046  217  1  1   36   97   227 0.914  16.48
 2.13 Intr +  93509  93712  204  0  0   83  101   265 0.981  26.47
 2.14 Intr +  96252  96393  142  1  1   37   56   184 0.297   9.51
 2.15 Term +  96458  96665  208  2  1   33   42   119 0.290  -1.39
 2.16 PlyA +  99655  99660    6                               1.05

 3.08 PlyA -  99785  99780    6                               1.05
 3.07 Term - 100096  99998   99  1  0   94   49   226 0.977  17.43
 3.06 Intr - 102065 102017   49  1  1  118   80    37 0.982   4.58
 3.05 Intr - 102245 102167   79  0  1   84   64   113 0.997   7.11
 3.04 Intr - 103211 103107  105  0  0  101   86   164 0.991  17.69
 3.03 Intr - 104711 104636   76  2  1  103   76   100 0.981   9.39
 3.02 Intr - 108114 108025   90  0  0  130   90    90 0.999  13.59
 3.01 Init - 109450 109448    3  1  0  101  101     0 0.809   2.60
 3.00 Prom - 114642 114603   40                              -3.16

 4.00 Prom + 120537 120576   40                              -1.06
 4.01 Init + 123552 123607   56  2  2   70  105     8 0.067   1.66
 4.02 Intr + 131989 132054   66  1  0   78   75    76 0.032   3.32
 4.03 Intr + 152003 152172  170  2  2   62   75    93 0.145   4.99
 4.04 Intr + 153177 153234   58  1  1  100   98    32 0.820   3.34
 4.05 Intr + 153738 154004  267  0  0  124   34    80 0.449   2.85
 4.06 Term + 160883 161006  124  2  1   81   54    60 0.267  -0.24
 4.07 PlyA + 162769 162774    6                               1.05

 5.06 PlyA - 162870 162865    6                               1.05
 5.05 Term - 166572 166393  180  0  0  100   44   110 0.404   5.41
 5.04 Intr - 176156 176131   26  0  2   90   82     2 0.012  -2.46
 5.03 Intr - 176666 176607   60  0  0   82   91    20 0.009   0.41
 5.02 Intr - 201485 201327  159  0  0   80   45    83 0.112   3.16
 5.01 Init - 206656 206443  214  1  1   62   91    69 0.091   3.51

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term +  69686  69860  175  2  1  -15   43   283 0.824  10.73


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815586r:110811080_111019194|GENSCAN_predicted_peptide_1|198_aa
MRFAKKHNKKSLKKMQANNAKAMGARAEAIKALAKPEEAKPKIPKGISHKLDRPACITHS
KLGKLHQPACITPLECSGNAIHVGAPGGATYTDNTVNAIPRVLVSNEFLVDFTWLSQATS
KEPHMEGFANQQRERFIQIFAKGRASSEPLTNSSLHDLKYNLLKTIFWEGRQRKKETKGQ
GGGSQDRIEEDPGNQKAP

>gi568815586r:110811080_111019194|GENSCAN_predicted_CDS_1|594_bp
atgcgctttgccaagaagcacaacaaaaagagcctgaagaagatgcaggccaacaatgcc
aaggccatgggtgcacgtgccgaggctatcaaggccctggcaaagcccgaggaggctaag
cccaagatcccaaagggcatcagccacaagcttgatcgacctgcctgcatcacccactcc
aagcttgggaagctccatcaacctgcctgcatcaccccactggagtgcagtggaaacgcc
attcatgttggtgcaccagggggcgccacttacacagacaatacagtgaacgccatcccc
agggtccttgtcagcaacgaattcctagtggattttacctggctatctcaggcaacaagc
aaagagccacacatggagggctttgcaaaccaacagcgtgagaggttcatccagattttt
gccaagggcagagctagctctgagcctctaaccaactcatcattacatgacttaaaatac
aatttgctgaagacaatcttctgggaagggagacagagaaagaaagaaaccaagggtcaa
ggaggaggcagccaagacaggatagaggaggaccctggaaaccagaaggctcct

>gi568815586r:110811080_111019194|GENSCAN_predicted_peptide_2|818_aa
MSQRTWPPKYADLQGRTSMFVRVTKAPVPGVPERPGVGLGVWRSEAAQQAVLPAPSEAQL
QQPSDKRPEQPRTSSPGPATDEETEAQRGQITLSVKVRYTQFMLLRWCITNPLRTQRALE
HRTAPGQYEIGAAPNSRAERGPRESILCPNLVSQLKKNRRKDSDTPQEPSEKAKEQQAEA
ELRKLRQQFRKMVESRKSFKFRNQQKIASQYKEIKTLKTEQDEITLLLSLMKSSRNMNRS
EKNYMELRLLLQTKEDYEALIKSLKVLLAELDEKSHPPLLEKDLSPSMTALVALIFTFYF
VKILQMEKKIANQKQIFAKMQEANNPRKLQKQIHILETRLNLVTVHFDKMLTTNAKLRKE
IEDLRFEKAAYDNVYQQLQHCLLMEKKTMNLAIEQSSQAYEQRVEAMARMAAMKDRQKKD
TSQYNLEIRELERLYAHESKLKSFLLVKLNDRNEFEEQAKREEALKAKKHVKKNRGESFE
SYEVAHLRLLKLAESGNLNQLIEDFLAKEEKNFARFTYVTELNNDMEMMHKRTQRIQDEI
ILLRSQQKLSHDDNHSVLRQLEVGIGVCHQDKLRKTTEEADMYESKYGEVSKTLDLLKNS
VEKLFKKINCDATKILVQLGETGKVTDINLPQYFAIIEKKTNDLLLLETYRRILEVEGAE
AEIPPPFINPFWGGSALLKPPEPIKVIPPVLGADPFSDRLDDVEQPLDHSSLRQLVLDNY
ILKENRSKEVRGDSLPEKVDDFRSRKKVTILVPVTHITKGFGYWGHLWAGAEEREVKAGT
GSGNHVSPSRPLETSELETSTGHPQICRDMDADAVHQM

>gi568815586r:110811080_111019194|GENSCAN_predicted_CDS_2|2457_bp
atgagccagcgcacctggcctccaaaatatgcggacttgcaggggagaacgtccatgttt
gtgcgagtcacaaaggcgcccgttccaggggtcccagaacgcccgggcgtggggctgggg
gtgtggcgcagcgaggccgcgcagcaagcagtcctcccggcaccgtcggaagcgcagttg
cagcagccgtcggacaagcggccggagcagccacggacaagcagtccgggccccgccact
gatgaggaaactgaagctcagagaggtcaaatcacactgtcagtgaaggtcagatatacc
cagttcatgttattaagatggtgcattacaaatccacttaggacccaaagggccctggaa
catagaacagctcctggacaatatgaaattggagctgccccaaattccagggctgaaaga
ggtcccagagagagcatcctgtgcccaaaccttgttagtcagttgaagaagaacaggaga
aaagactccgacactccccaggaaccttcggagaaggccaaagagcagcaggcggaggca
gagctccggaagctaaggcagcagttcaggaagatggtggaaagccggaagtcttttaag
ttccgaaaccagcagaagattgcgagtcagtacaaggagatcaagaccctgaagacagag
caggatgagatcaccctactgttgagtctcatgaaatcctcgaggaacatgaatcggagt
gagaagaactacatggagctgcgactcctgctccaaactaaggaggactatgaggcattg
attaaatccctgaaagtgctgttggctgaactggatgagaagtcacatcccccattatta
gagaaagacctctctccatcaatgaccgccctggttgctctcatcttcaccttctatttt
gtcaagattcttcagatggaaaaaaaaatcgcaaaccaaaaacagattttcgcaaaaatg
caggaggccaataacccccggaaactgcagaaacagattcacattttggaaacccgtttg
aatctcgtcactgttcactttgacaagatgctgaccactaatgccaagctccggaaggag
attgaagacctacgatttgagaaggctgcttatgacaatgtctaccagcagctccagcac
tgcctgttgatggagaagaaaaccatgaacttggccattgagcaatcttctcaggcctat
gagcagagggtggaggccatggctcgaatggctgccatgaaagaccgccagaagaaggac
acctctcagtacaacctggagatccgagagctggagcgtctctatgcccatgagagcaag
ctcaagtccttcctgctcgtcaagctgaatgatcgcaatgaattcgaggagcaggccaaa
agggaggaagctctcaaggcaaagaagcatgtcaagaagaacaggggagagagttttgag
agctatgaggtggcccacctccggctgctgaagctggctgagagtgggaacctaaaccag
ctcattgaagattttctggccaaggaggagaagaattttgctcggttcacgtatgtcacg
gagctcaacaacgacatggagatgatgcacaagaggacccaacgaatccaggacgagatc
atcctcttgcgatcccagcagaaattgtcccacgatgacaaccactctgtcctgagacag
ctggaggtgggaattggggtctgccaccaggataaactgaggaagaccacggaggaggca
gatatgtatgagagcaagtacggggaggtcagcaagaccttggatctattgaagaactca
gtggagaaactgttcaagaagataaactgtgacgccaccaagatcctggtgcagttaggg
gagacggggaaagtcactgacatcaaccttccgcagtattttgccatcattgaaaagaag
accaacgacctgctgctgttggagacctacaggcgcatcctggaagtggaaggggcagag
gctgagatcccgccacccttcatcaaccctttctggggtggctctgccctcctcaagccc
ccagaacccatcaaagtcatccccccagtgctgggggctgaccccttcagcgacaggttg
gatgatgtggaacagcccctggaccacagcagccttcggcagctggttctcgacaattat
atcctgaaggagaatcggagtaaggaagtgcgcggagacagcctgcctgagaaggtggat
gacttcagatccaggaagaaagtaaccatcctcgtgcctgtcacacacattactaagggc
tttgggtactggggccacctctgggctggggccgaggagcgagaagtaaaagcgggaaca
gggagtgggaaccatgtgagtccatcaaggcccctggaaacctctgagctggagaccagc
acaggccacccccagatatgcagagacatggatgcagatgcggtccaccagatgtaa

>gi568815586r:110811080_111019194|GENSCAN_predicted_peptide_3|166_aa
MAPKKAKKRAGGANSNVFSMFEQTQIQEFKEAFTIMDQNRDGFIDKNDLRDTFAALGRVN
VKNEEIDEMIKEAPGPINFTVFLTMFGEKLKGADPEETILNAFKVFDPEGKGVLKADYVR
EMLTTQAERFSKEEVDQMFAAFPPDVTGNLDYKNLVHIITHGEEKD

>gi568815586r:110811080_111019194|GENSCAN_predicted_CDS_3|501_bp
atggcacctaagaaagcaaagaagagagccgggggcgccaactccaacgtgttctccatg
ttcgaacagacccaaatccaggaatttaaggaggccttcactatcatggaccagaacagg
gatggcttcattgacaagaacgatctgagagacacctttgctgcccttgggcgagtgaac
gtgaaaaatgaagaaattgatgaaatgatcaaggaggctccgggtccaattaactttact
gtgttcctcacaatgtttggggagaaacttaagggagcggaccctgaggaaaccattctc
aacgcattcaaagtgtttgaccctgaaggcaaaggggtgctgaaggctgattacgttcgg
gaaatgctgaccacgcaggcggagaggttttccaaggaggaggttgaccagatgttcgcc
gccttcccccctgacgtgactggcaacttggactacaagaacctggtgcacatcatcacc
cacggagaagagaaggactag

>gi568815586r:110811080_111019194|GENSCAN_predicted_peptide_4|246_aa
MAHGILSGMKVCGQQGPRRIWDFLVDIKWLLQLQATHAPSRKDHISKFQMENGLVMASPC
GFLWQLKGLILQDPALGSLFLLCAGYDDSCQEGQGISVPTNAAYTWNDAAFHPIPTSWAW
VKVRRQSAQSGPRVEGGWCPKGKLGCWYLSRKKRYQEGQTTDIPCGHKVGTCKTAPIPGY
SCYQKNKELDRLPSFSEGHRGVSEGRLNKLSYLGTMEAFVVFSFLVWATVCTRIQITLEG
HASDYL

>gi568815586r:110811080_111019194|GENSCAN_predicted_CDS_4|741_bp
atggctcatggaatcctctctggaatgaaggtgtgtggccagcaagggcctcggaggata
tgggacttccttgtggacataaaatggctgctgcagctccaggccacacatgcaccttcc
aggaaagaccatatttccaagttccagatggaaaatggactggttatggccagtccctgt
ggcttcctatggcagcttaaagggctcatcttgcaggatcctgccctgggctccctcttc
ctcctgtgtgccggatatgatgacagctgtcaagagggacaaggcatttcagtacccacc
aatgctgcatatacctggaatgatgctgcttttcaccccattcccacaagctgggcttgg
gtcaaggtgaggagacaatcagcccaaagcggaccccgagtggaaggtggttggtgtccc
aaaggcaaattagggtgctggtatctgagcaggaaaaagagatatcaggaaggccaaaca
acagacattccctgtgggcataaagttggtacttgcaaaacagcgccaatacctggatat
tcctgttaccagaaaaacaaagagctggatcgccttcccagtttctcggaaggacaccgt
ggtgtttctgagggaaggctgaacaaactatcttacttggggacaatggaagcttttgtc
gtcttttccttcctcgtgtgggccactgtctgtacgagaatccagattacccttgagggc
cacgctagtgattacctctga

>gi568815586r:110811080_111019194|GENSCAN_predicted_peptide_5|212_aa
MRSCPSASPRRRPSGHNEWAPDVDSRTLSDTPNPTRTYFYEPIARGQWVCKNMFMVQGPE
ELMICSLHQPTGSFTSPPPGKKAGLRRSGRFRGDAQPLRSGLIWPSTCDFESWKREDYNS
EWHADYKYPLTELPEELNQVTVKSGIKTGMRFQTEATPLDPNKKMTEQSLKLPTIDMEPE
QEINLYGCKPWRLRRCLLLQHNPVSLTATEGE

>gi568815586r:110811080_111019194|GENSCAN_predicted_CDS_5|639_bp
atgaggtcttgcccatcagcatctcctagaagaagacccagtggacacaatgagtgggct
ccagacgtggattcccggacactttcagatacacccaatccaaccagaacatatttctat
gagcccattgcaagaggccagtgggtctgcaaaaatatgttcatggtgcaaggtccagag
gagcttatgatttgttccctccatcagccaacaggatccttcacatctcctccaccagga
aagaaagctggactgcgcaggtcgggaagattccggggagatgcacagcctttgcgttct
gggctcatctggccttcaacgtgtgattttgagagttggaagcgagaagattataactca
gaatggcacgcggattataaatatccactcacagagttgccagaagaattaaatcaagta
acagttaaatcagggattaaaacaggaatgaggtttcagacagaggccacgccactagat
cccaacaagaagatgacagaacagagcctcaagctacccaccattgacatggaacctgaa
caagaaataaacctgtatggttgtaagccatggagacttaggagatgtttgttgctgcag
cataatccagtctccctgactgctacagagggtgaatga