Result of FASTA (omim) for pF1KB5687
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5687, 244 aa
  1>>>pF1KB5687 244 - 244 aa - 244 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.4882+/-0.000464; mu= 20.0043+/- 0.029
 mean_var=93.7330+/-19.225, 0's: 0 Z-trim(111.9): 367  B-trim: 502 in 1/52
 Lambda= 0.132473
 statistics sampled from 20201 (20634) to 20201 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.625), E-opt: 0.2 (0.242), width:  16
 Scan time:  5.540

The best scores are:                                      opt bits E(85289)
NP_005159 (OMIM: 602924) rho-related GTP-binding p ( 244) 1615 318.9 5.2e-87
NP_001241667 (OMIM: 602924) rho-related GTP-bindin ( 244) 1615 318.9 5.2e-87
NP_005431 (OMIM: 601555) rho-related GTP-binding p ( 227) 1021 205.3 7.5e-53
XP_011523618 (OMIM: 601555) PREDICTED: rho-related ( 234) 1016 204.4 1.5e-52
NP_055285 (OMIM: 609038) rho-related GTP-binding p ( 232)  988 199.0   6e-51
XP_011523619 (OMIM: 601555) PREDICTED: rho-related ( 206)  861 174.7 1.1e-43
NP_001300870 (OMIM: 165390) transforming protein R ( 193)  661 136.4 3.5e-32
NP_001655 (OMIM: 165390) transforming protein RhoA ( 193)  661 136.4 3.5e-32
NP_001036143 (OMIM: 165380) rho-related GTP-bindin ( 193)  658 135.8 5.2e-32
NP_001036144 (OMIM: 165380) rho-related GTP-bindin ( 193)  658 135.8 5.2e-32
NP_786886 (OMIM: 165380) rho-related GTP-binding p ( 193)  658 135.8 5.2e-32
NP_004031 (OMIM: 165370) rho-related GTP-binding p ( 196)  643 133.0 3.8e-31
NP_055393 (OMIM: 605781) rho-related GTP-binding p ( 210)  577 120.4 2.5e-27
NP_008839 (OMIM: 602048) ras-related C3 botulinum  ( 192)  569 118.8 6.9e-27
XP_005252973 (OMIM: 179505) PREDICTED: rho-related ( 191)  565 118.0 1.2e-26
NP_001656 (OMIM: 179505) rho-related GTP-binding p ( 191)  565 118.0 1.2e-26
XP_016873208 (OMIM: 179505) PREDICTED: rho-related ( 191)  565 118.0 1.2e-26
NP_005043 (OMIM: 602050) ras-related C3 botulinum  ( 192)  555 116.1 4.4e-26
NP_001300872 (OMIM: 165390) transforming protein R ( 187)  548 114.8 1.1e-25
NP_036381 (OMIM: 605857) rho-related GTP-binding p ( 205)  544 114.1   2e-25
NP_002863 (OMIM: 602049,608203) ras-related C3 bot ( 192)  543 113.8 2.1e-25
NP_426359 (OMIM: 116952,616737) cell division cont ( 191)  513 108.1 1.1e-23
NP_001782 (OMIM: 116952,616737) cell division cont ( 191)  508 107.1 2.2e-23
NP_001034891 (OMIM: 116952,616737) cell division c ( 191)  508 107.1 2.2e-23
NP_001303236 (OMIM: 602050) ras-related C3 botulin ( 170)  501 105.7 5.2e-23
NP_065714 (OMIM: 607653) rho-related GTP-binding p ( 214)  500 105.7 6.8e-23
NP_067028 (OMIM: 606366) rho-related GTP-binding p ( 258)  495 104.8 1.5e-22
XP_006724349 (OMIM: 602049,608203) PREDICTED: ras- ( 161)  489 103.4 2.5e-22
XP_011531028 (OMIM: 605857) PREDICTED: rho-related ( 192)  463 98.6 8.6e-21
XP_016859205 (OMIM: 605857) PREDICTED: rho-related ( 172)  462 98.3 9.2e-21
XP_006720277 (OMIM: 607653) PREDICTED: rho-related ( 176)  430 92.2 6.5e-19
NP_001265292 (OMIM: 602037) rho-related GTP-bindin ( 191)  429 92.0 7.8e-19
NP_001265288 (OMIM: 602037) rho-related GTP-bindin ( 191)  429 92.0 7.8e-19
NP_001265291 (OMIM: 602037) rho-related GTP-bindin ( 191)  429 92.0 7.8e-19
NP_001265295 (OMIM: 602037) rho-related GTP-bindin ( 191)  429 92.0 7.8e-19
NP_001265294 (OMIM: 602037) rho-related GTP-bindin ( 191)  429 92.0 7.8e-19
NP_001265297 (OMIM: 602037) rho-related GTP-bindin ( 191)  429 92.0 7.8e-19
NP_004301 (OMIM: 602037) rho-related GTP-binding p ( 191)  429 92.0 7.8e-19
NP_001265293 (OMIM: 602037) rho-related GTP-bindin ( 191)  429 92.0 7.8e-19
XP_016863678 (OMIM: 602037) PREDICTED: rho-related ( 191)  429 92.0 7.8e-19
NP_001265298 (OMIM: 602037) rho-related GTP-bindin ( 191)  429 92.0 7.8e-19
XP_011511994 (OMIM: 602037) PREDICTED: rho-related ( 191)  429 92.0 7.8e-19
NP_001265290 (OMIM: 602037) rho-related GTP-bindin ( 191)  429 92.0 7.8e-19
NP_001265296 (OMIM: 602037) rho-related GTP-bindin ( 191)  429 92.0 7.8e-19
NP_001265289 (OMIM: 602037) rho-related GTP-bindin ( 191)  429 92.0 7.8e-19
XP_016863677 (OMIM: 602037) PREDICTED: rho-related ( 191)  429 92.0 7.8e-19
NP_001300873 (OMIM: 165390) transforming protein R ( 173)  397 85.9 5.1e-17
XP_011531030 (OMIM: 605857) PREDICTED: rho-related ( 157)  360 78.7 6.4e-15
NP_061485 (OMIM: 602048) ras-related C3 botulinum  ( 211)  323 71.8   1e-12
NP_001300874 (OMIM: 165390) transforming protein R ( 112)  309 68.8 4.5e-12


>>NP_005159 (OMIM: 602924) rho-related GTP-binding prote  (244 aa)
 initn: 1615 init1: 1615 opt: 1615  Z-score: 1683.0  bits: 318.9 E(85289): 5.2e-87
Smith-Waterman score: 1615; 100.0% identity (100.0% similar) in 244 aa overlap (1-244:1-244)

               10        20        30        40        50        60
pF1KB5 MKERRASQKLSSKSIMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MKERRASQKLSSKSIMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 IQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 IQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 QSENSVRDIFHVATLACVNKTNKNVKRNKSQRATKRISHMPSRPELSAVATDLRKDKAKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 QSENSVRDIFHVATLACVNKTNKNVKRNKSQRATKRISHMPSRPELSAVATDLRKDKAKS
              190       200       210       220       230       240

           
pF1KB5 CTVM
       ::::
NP_005 CTVM
           

>>NP_001241667 (OMIM: 602924) rho-related GTP-binding pr  (244 aa)
 initn: 1615 init1: 1615 opt: 1615  Z-score: 1683.0  bits: 318.9 E(85289): 5.2e-87
Smith-Waterman score: 1615; 100.0% identity (100.0% similar) in 244 aa overlap (1-244:1-244)

               10        20        30        40        50        60
pF1KB5 MKERRASQKLSSKSIMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKERRASQKLSSKSIMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 IQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 QSENSVRDIFHVATLACVNKTNKNVKRNKSQRATKRISHMPSRPELSAVATDLRKDKAKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QSENSVRDIFHVATLACVNKTNKNVKRNKSQRATKRISHMPSRPELSAVATDLRKDKAKS
              190       200       210       220       230       240

           
pF1KB5 CTVM
       ::::
NP_001 CTVM
           

>>NP_005431 (OMIM: 601555) rho-related GTP-binding prote  (227 aa)
 initn: 1015 init1: 975 opt: 1021  Z-score: 1069.8  bits: 205.3 E(85289): 7.5e-53
Smith-Waterman score: 1021; 64.0% identity (89.3% similar) in 225 aa overlap (20-244:4-227)

               10        20        30        40        50        60
pF1KB5 MKERRASQKLSSKSIMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY
                          :. .::::::::..:::::::.::::: .: .:::::::::
NP_005                 MEGQSGRCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENY
                               10        20        30        40    

               70        80        90       100       110       120
pF1KB5 TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGE
       ::::::: .::::..:::::: ::::::::.::::::::::::::::::::::::::.::
NP_005 TASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGE
           50        60        70        80        90       100    

              130       140       150       160       170       180
pF1KB5 IQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL
        ::::::.:..::::: :.:::..:: :::..:  ::...::. .:::.::..:.:::. 
NP_005 TQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSR
          110       120       130       140       150       160    

              190       200       210       220       230       240
pF1KB5 QSENSVRDIFHVATLACVNKTNKNVKRNKSQRATKRISHMPSRPELSAVATDLRKDKAKS
       .:: ::::.:::::.: ... .....:. :.:. .: ... .::.  .   ...::.:::
NP_005 SSERSVRDVFHVATVASLGRGHRQLRRTDSRRGMQRSAQLSGRPD-RGNEGEIHKDRAKS
          170       180       190       200        210       220   

           
pF1KB5 CTVM
       :..:
NP_005 CNLM
           

>>XP_011523618 (OMIM: 601555) PREDICTED: rho-related GTP  (234 aa)
 initn: 1010 init1: 975 opt: 1016  Z-score: 1064.5  bits: 204.4 E(85289): 1.5e-52
Smith-Waterman score: 1016; 63.6% identity (89.3% similar) in 225 aa overlap (20-244:4-227)

               10        20        30        40        50        60
pF1KB5 MKERRASQKLSSKSIMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY
                          :. .::::::::..:::::::.::::: .: .:::::::::
XP_011                 MEGQSGRCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENY
                               10        20        30        40    

               70        80        90       100       110       120
pF1KB5 TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGE
       ::::::: .::::..:::::: ::::::::.::::::::::::::::::::::::::.::
XP_011 TASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGE
           50        60        70        80        90       100    

              130       140       150       160       170       180
pF1KB5 IQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL
        ::::::.:..::::: :.:::..:: :::..:  ::...::. .:::.::..:.:::. 
XP_011 TQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSR
          110       120       130       140       150       160    

              190       200       210       220       230       240
pF1KB5 QSENSVRDIFHVATLACVNKTNKNVKRNKSQRATKRISHMPSRPELSAVATDLRKDKAKS
       .:: ::::.:::::.: ... .....:. :.:. .: ... .::.  .   ...::.:::
XP_011 SSERSVRDVFHVATVASLGRGHRQLRRTDSRRGMQRSAQLSGRPD-RGNEGEIHKDRAKS
          170       180       190       200        210       220   

                  
pF1KB5 CTVM       
       :...       
XP_011 CNLIYSHTSNL
           230    

>>NP_055285 (OMIM: 609038) rho-related GTP-binding prote  (232 aa)
 initn: 970 init1: 936 opt: 988  Z-score: 1035.6  bits: 199.0 E(85289): 6e-51
Smith-Waterman score: 1001; 58.2% identity (83.2% similar) in 244 aa overlap (1-244:1-232)

               10        20        30        40        50        60
pF1KB5 MKERRASQKLSSKSIMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY
       :::::: : . ..          ::.:.::: ::::::.:.:.::::.::.:::::::::
NP_055 MKERRAPQPVVAR----------CKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY
               10                  20        30        40        50

               70        80        90       100       110       120
pF1KB5 TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGE
       :: .: . ::.::::::::::::::::::: : ::::::.:::::::::.::.::::. :
NP_055 TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTE
               60        70        80        90       100       110

              130       140       150       160       170       180
pF1KB5 IQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL
       : ..::.:..::.:::.:::::.:::.:::...:.:.::.::  .:::.::  :.: ::.
NP_055 ILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAF
              120       130       140       150       160       170

              190       200       210       220       230       240
pF1KB5 QSENSVRDIFHVATLACVNKTNKNVKRNKSQRATKRISHMPSRPELSAVATDLRKDKAKS
        ::.:...::..:.. :.:: .   ...  .  .::. :.::: ::  ... ..:.::::
NP_055 TSEKSIHSIFRTASMLCLNKPSPLPQKSPVRSLSKRLLHLPSRSEL--ISSTFKKEKAKS
              180       190       200       210         220        

           
pF1KB5 CTVM
       :..:
NP_055 CSIM
      230  

>>XP_011523619 (OMIM: 601555) PREDICTED: rho-related GTP  (206 aa)
 initn: 861 init1: 826 opt: 861  Z-score: 905.0  bits: 174.7 E(85289): 1.1e-43
Smith-Waterman score: 861; 62.4% identity (89.2% similar) in 194 aa overlap (51-244:7-199)

               30        40        50        60        70        80
pF1KB5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSG
                                     .:::::::::::::::: .::::..:::::
XP_011                         MGMGTRSYVPTVFENYTASFEIDKRRIELNMWDTSG
                                       10        20        30      

               90       100       110       120       130       140
pF1KB5 SPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR
       : ::::::::.::::::::::::::::::::::::::.:: ::::::.:..::::: :.:
XP_011 SSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMR
         40        50        60        70        80        90      

              150       160       170       180       190       200
pF1KB5 TDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVNK
       ::..:: :::..:  ::...::. .:::.::..:.:::. .:: ::::.:::::.: ...
XP_011 TDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSSERSVRDVFHVATVASLGR
        100       110       120       130       140       150      

              210       220       230       240           
pF1KB5 TNKNVKRNKSQRATKRISHMPSRPELSAVATDLRKDKAKSCTVM       
        .....:. :.:. .: ... .::. .    ...::.::::...       
XP_011 GHRQLRRTDSRRGMQRSAQLSGRPDRGN-EGEIHKDRAKSCNLIYSHTSNL
        160       170       180        190       200      

>>NP_001300870 (OMIM: 165390) transforming protein RhoA   (193 aa)
 initn: 627 init1: 627 opt: 661  Z-score: 698.7  bits: 136.4 E(85289): 3.5e-32
Smith-Waterman score: 661; 52.0% identity (84.0% similar) in 175 aa overlap (22-196:4-177)

               10        20        30        40        50        60
pF1KB5 MKERRASQKLSSKSIMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY
                            .. :.:.:::. :::: :: ::.:: ::: :::::::::
NP_001                   MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY
                                 10        20        30        40  

               70        80        90       100       110       120
pF1KB5 TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGE
       .:..:.: ...::.::::.:.  :: .:::::::.:..:.::.:. :..:... .::  :
NP_001 VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE
             50        60        70        80        90       100  

              130       140       150       160       170       180
pF1KB5 IQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL
       ...::::. ..::: :.:::.:  :  ::.. .: ::. ..: .::..:::  :.:::: 
NP_001 VKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSA-
            110       120       130       140       150       160  

              190       200       210       220       230       240
pF1KB5 QSENSVRDIFHVATLACVNKTNKNVKRNKSQRATKRISHMPSRPELSAVATDLRKDKAKS
       .....::..:..:: :                                            
NP_001 KTKDGVREVFEMATRAALQARRGKKKSGCLVL                            
             170       180       190                               

>>NP_001655 (OMIM: 165390) transforming protein RhoA iso  (193 aa)
 initn: 627 init1: 627 opt: 661  Z-score: 698.7  bits: 136.4 E(85289): 3.5e-32
Smith-Waterman score: 661; 52.0% identity (84.0% similar) in 175 aa overlap (22-196:4-177)

               10        20        30        40        50        60
pF1KB5 MKERRASQKLSSKSIMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY
                            .. :.:.:::. :::: :: ::.:: ::: :::::::::
NP_001                   MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY
                                 10        20        30        40  

               70        80        90       100       110       120
pF1KB5 TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGE
       .:..:.: ...::.::::.:.  :: .:::::::.:..:.::.:. :..:... .::  :
NP_001 VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE
             50        60        70        80        90       100  

              130       140       150       160       170       180
pF1KB5 IQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL
       ...::::. ..::: :.:::.:  :  ::.. .: ::. ..: .::..:::  :.:::: 
NP_001 VKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSA-
            110       120       130       140       150       160  

              190       200       210       220       230       240
pF1KB5 QSENSVRDIFHVATLACVNKTNKNVKRNKSQRATKRISHMPSRPELSAVATDLRKDKAKS
       .....::..:..:: :                                            
NP_001 KTKDGVREVFEMATRAALQARRGKKKSGCLVL                            
             170       180       190                               

>>NP_001036143 (OMIM: 165380) rho-related GTP-binding pr  (193 aa)
 initn: 619 init1: 619 opt: 658  Z-score: 695.6  bits: 135.8 E(85289): 5.2e-32
Smith-Waterman score: 658; 48.7% identity (80.6% similar) in 191 aa overlap (22-212:4-188)

               10        20        30        40        50        60
pF1KB5 MKERRASQKLSSKSIMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY
                            .. :.:.:::. :::: :: ::.:: ::: :::::::::
NP_001                   MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY
                                 10        20        30        40  

               70        80        90       100       110       120
pF1KB5 TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGE
        :..:.: ...::.::::.:.  :: .:::::::.:..:.::.:. :..:... .::  :
NP_001 IADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE
             50        60        70        80        90       100  

              130       140       150       160       170       180
pF1KB5 IQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL
       ...::::. ..::: :.::: :  :  ::.. .: ::  ..: .::..:.:  :.:::: 
NP_001 VKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSA-
            110       120       130       140       150       160  

              190       200       210       220       230       240
pF1KB5 QSENSVRDIFHVATLACVNKTNKNVKRNKSQRATKRISHMPSRPELSAVATDLRKDKAKS
       .....::..:..::     ... .:..:: .:                            
NP_001 KTKEGVREVFEMAT-----RAGLQVRKNKRRRGCPIL                       
             170            180       190                          

           
pF1KB5 CTVM

>>NP_001036144 (OMIM: 165380) rho-related GTP-binding pr  (193 aa)
 initn: 619 init1: 619 opt: 658  Z-score: 695.6  bits: 135.8 E(85289): 5.2e-32
Smith-Waterman score: 658; 48.7% identity (80.6% similar) in 191 aa overlap (22-212:4-188)

               10        20        30        40        50        60
pF1KB5 MKERRASQKLSSKSIMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY
                            .. :.:.:::. :::: :: ::.:: ::: :::::::::
NP_001                   MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY
                                 10        20        30        40  

               70        80        90       100       110       120
pF1KB5 TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGE
        :..:.: ...::.::::.:.  :: .:::::::.:..:.::.:. :..:... .::  :
NP_001 IADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE
             50        60        70        80        90       100  

              130       140       150       160       170       180
pF1KB5 IQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL
       ...::::. ..::: :.::: :  :  ::.. .: ::  ..: .::..:.:  :.:::: 
NP_001 VKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSA-
            110       120       130       140       150       160  

              190       200       210       220       230       240
pF1KB5 QSENSVRDIFHVATLACVNKTNKNVKRNKSQRATKRISHMPSRPELSAVATDLRKDKAKS
       .....::..:..::     ... .:..:: .:                            
NP_001 KTKEGVREVFEMAT-----RAGLQVRKNKRRRGCPIL                       
             170            180       190                          

           
pF1KB5 CTVM




244 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 13:12:53 2016 done: Sat Nov  5 13:12:54 2016
 Total Scan time:  5.540 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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