GENSCAN 1.0	Date run:  6-Nov-116	Time: 23:02:19

Sequence gi568815596r:9306837_9518697 : 211861 bp : 45.07% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   3458   3474   17  1  2   76  110    12 0.305   1.02
 1.02 Intr +   5531   5661  131  2  2  116   66    36 0.743   4.54
 1.03 Intr +  11892  11983   92  1  2   40   73    54 0.537  -1.19
 1.04 Intr +  13452  13501   50  2  2  104   82    52 0.819   3.68
 1.05 Intr +  16285  16414  130  1  1   67   94   152 0.991  14.40
 1.06 Intr +  20990  21075   86  1  2   73  108    76 0.972   6.72
 1.07 Intr +  27902  27977   76  2  1   87  113    65 0.957   8.42
 1.08 Intr +  28257  28343   87  2  0   62   78    70 0.903   3.57
 1.09 Intr +  37696  37803  108  0  0   66   55   119 0.292   6.88
 1.10 Intr +  43630  43731  102  0  0   53   94    37 0.470   1.17
 1.11 Intr +  43972  44059   88  0  1   71   85    86 0.941   6.14
 1.12 Intr +  49211  49259   49  0  1   76  101    37 0.935   1.54
 1.13 Intr +  49343  49509  167  2  2  100   60   235 0.993  21.50
 1.14 Intr +  51920  52053  134  0  2   87   51    83 0.900   4.86
 1.15 Intr +  61589  61683   95  1  2   80  103    70 0.955   6.46
 1.16 Intr +  67919  68108  190  2  1   41   66   243 0.823  16.99
 1.17 Intr +  72028  72223  196  0  1   93   95   215 0.864  21.69
 1.18 Intr +  73905  73972   68  1  2   62  105   105 0.998   8.22
 1.19 Intr +  78409  78522  114  0  0   79   62   175 0.998  14.64
 1.20 Intr +  81458  81710  253  1  1  100   86   187 0.998  16.71
 1.21 Intr +  82927  83058  132  2  0   60   59    62 0.443   1.12
 1.22 Intr +  86646  86811  166  1  1  149   86    68 0.911  11.72
 1.23 Intr +  92465  92595  131  2  2   66   38    85 0.521   1.64
 1.24 Intr +  93906  93994   89  1  2   95   92    19 0.987   2.69
 1.25 Intr +  94438  94560  123  0  0   90   92   239 0.999  25.28
 1.26 Term +  96417  96491   75  2  0  110   38    78 0.991   2.84
 1.27 PlyA +  96816  96821    6                               1.05

 2.08 PlyA -  97883  97878    6                               1.05
 2.07 Term - 100069  99998   72  1  0   60   41    34 0.362  -6.19
 2.06 Intr - 100762 100613  150  1  0   85   85    72 0.711   6.96
 2.05 Intr - 105569 105433  137  0  2  113   98    96 0.999  13.39
 2.04 Intr - 107420 107342   79  2  1   89   88    31 0.570   2.32
 2.03 Intr - 113264 113154  111  2  0  100   66    51 0.474   4.68
 2.02 Intr - 116985 116912   74  1  2   98   60    49 0.115   2.23
 2.01 Init - 117848 117842    7  2  1   76   64     0 0.102  -2.53
 2.00 Prom - 124016 123977   40                              -5.66

 3.00 Prom + 124519 124558   40                              -7.26
 3.01 Init + 125694 125852  159  2  0   85   75   111 0.769   9.32
 3.02 Intr + 127035 127124   90  2  0   87   87    43 0.896   4.29
 3.03 Intr + 129375 129525  151  2  1   48   57    30 0.711  -4.36
 3.04 Intr + 133655 133830  176  0  2   54  113   153 0.740  14.06
 3.05 Intr + 134982 135140  159  2  0  101   86    41 0.976   5.38
 3.06 Intr + 136679 136825  147  1  0   88   37    50 0.537   0.33
 3.07 Intr + 141362 141514  153  1  0   41   93   148 0.952  10.87
 3.08 Intr + 146077 146185  109  0  1   99  100     1 0.996   2.26
 3.09 Intr + 148823 148921   99  0  0   92   89    78 0.988   8.38
 3.10 Intr + 150097 150191   95  2  2   76   63    39 0.810  -0.12
 3.11 Intr + 152695 152782   88  0  1   94  116    29 0.855   5.84
 3.12 Intr + 160871 160940   70  0  1  129  100     5 0.967   4.04
 3.13 Intr + 164507 164603   97  2  1  104   79    84 0.998   9.11
 3.14 Term + 166080 166181  102  2  0   87   53   178 0.999  12.48
 3.15 PlyA + 166238 166243    6                               1.05

 4.00 Prom + 167171 167210   40                             -11.92
 4.01 Init + 167731 167811   81  0  0   73   96   153 0.911  13.59
 4.02 Intr + 170003 170034   32  1  2   83   92    13 0.720  -1.87
 4.03 Intr + 171386 171534  149  2  2   76   93    55 0.974   4.68
 4.04 Intr + 174450 174611  162  1  0   16   92   161 0.943   9.25
 4.05 Intr + 177596 177714  119  0  2  105   96   137 0.997  16.38
 4.06 Term + 179307 179405   99  2  0   69   47    90 0.915   1.13
 4.07 PlyA + 181602 181607    6                               1.05

 5.11 PlyA - 181671 181666    6                               1.05
 5.10 Term - 183682 183341  342  1  0   84   28   350 0.877  23.11
 5.09 Intr - 184315 184265   51  1  0  116   84     8 0.750   2.30
 5.08 Intr - 186150 186062   89  1  2   56  103    10 0.864  -1.01
 5.07 Intr - 186989 186911   79  2  1  106   74    74 0.947   6.92
 5.06 Intr - 187931 187801  131  0  2   89   82    73 0.996   7.21
 5.05 Intr - 190412 190278  135  0  0  104   89   127 0.960  14.94
 5.04 Intr - 195440 195337  104  1  2  100   79    64 0.920   6.52
 5.03 Intr - 198529 198330  200  1  2   72   94   225 0.976  19.65
 5.02 Intr - 203295 203143  153  0  0   27   95   105 0.782   5.37
 5.01 Init - 211287 211267   21  0  0  101  110    10 0.643   4.19

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815596r:9306837_9518697|GENSCAN_predicted_peptide_1|982_aa
MQASLSCCLLLTPRLPRLAGPTPALRPPSMPFLLPSLPLPPPHDAPSFEASSDLPSWDHL
SAKKVVTSGLSGRPVGTTKLDLKKPFDKAWKDYETKITKIEKEKKEHAKLHGMIRTEISG
AEIAEEMEKERRFFQLQMCEYLLKVNEIKIKKGVDLLQNLIKYFHAQCNFFQDGLKAVES
LKPSIETLSTDLHTIKQAQDEERRQLIQLRDILKSALQVEQKEDSQIRQSTAYSLHQPQG
NKEHGTERNGSLYKKSDGYESELNVLGLAMQYLDLKAPTASSLKAGIACPLVQANRPPAK
LNLLTCQVKTNPEEKKCFDLISHDRTYHFQAEDEQECQIWMSVLQNSKEEALNNAFKGDD
NTGENNIVQELTKEIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGV
HYSRMQSLTLDVLGTSELLLAKNIGNAGFNEIMECCLPAEDSVKPNPGSDMNARKDYITA
KYIERRYARKKHADNAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHPRLPAG
QSLVVQPVTHYALSLFLFSGSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIA
NESGETPLDIAKRLKHEHCEELLTQALSGRFNSHVHVEYEWRLLHEDLDESDDDMDEKLQ
PSPNRREDRPISFYQLGSNQLQSNAVSLARDAANLAKEKQRAFMPSILQNETYGALLSGS
PPPAQPAAPSTTSAPPLPPRNVGKAHIPDRVHPWLDEDVPEHRRQLQDEATQSHLLPVKP
PGWLVGAQDPLTPTPPPPVAKTPSVMEALSQPSKPAPPGISQIRPPPLPPQPPSRLPQKK
PAPGSRRSTGELKPLALVLSSGVDGSCVTPFADENADSPEPIYPGLPVDLSATEALGPLS
NAMVLQPPAPMPRKSQATKLKPKRVKALYNCVADNPDELTFSEGDVIIVDGEEDQEWWIG
HIDGDPGRKGAFPVSFVHFIAD

>gi568815596r:9306837_9518697|GENSCAN_predicted_CDS_1|2949_bp
atgcaggcaagcctcagctgctgccttctgctgactcctcgactgccacggctggcaggg
cccacaccagcacttcgaccaccctctatgccattccttttgcccagtctacccctgccc
ccacctcacgatgccccatcttttgaagcttcctctgatttgccatcttgggaccacctt
tcagccaaaaaggtggtgacttctggcctttctggccgtcctgttggcacaacaaagttg
gatctgaaaaagccttttgataaagcttggaaggactatgaaacaaaaataaccaagata
gaaaaggagaaaaaggaacacgccaagctccatgggatgattcggactgaaataagcgga
gcggaaattgccgaagagatggaaaaggagaggcgcttcttccagctacagatgtgcgag
tatctgctgaaggtcaacgaaatcaagattaaaaagggagtagatttacttcagaatctg
atcaaatactttcatgcccaatgcaatttttttcaggatggactcaaagccgtggaaagc
ctcaaaccttccattgaaacgctgtctacggatcttcacacgatcaaacaggcccaggat
gaagaaagaaggcagttgatacagcttcgagatattttgaaatccgcattgcaggttgaa
cagaaagaggactcccaaattcgtcagagcacagcttatagcttacatcagcctcaggga
aacaaggaacatgggaccgagcggaacggcagcctctacaagaagagtgacgggtacgaa
tcagaactgaatgttttgggcttagccatgcaatatcttgatctgaaggcacccactgcc
agcagcctcaaagctggcatcgcttgtcctcttgtccaggctaaccggcctcctgcaaag
ctcaacctgctaacctgccaggtgaagaccaaccctgaggagaagaagtgctttgacctc
atttcacatgacagaacttaccactttcaagctgaagatgaacaggaatgtcaaatatgg
atgtctgtgctgcaaaatagcaaagaagaagctttaaacaatgcatttaagggggatgac
aatactggagaaaataacatcgtccaagaactgacaaaggagatcatctcagaagtgcag
aggatgacgggcaatgacgtctgctgtgactgtggggcgccagatcctacatggctttcc
accaacctgggcatcctgacctgcatcgagtgttccggaatccaccgagagctgggggtt
cattattccaggatgcagtccctgaccttagatgtactgggaacatctgagctgctgctc
gccaagaatattgggaatgcaggctttaatgagatcatggaatgttgcctaccagctgag
gactcagtcaaacccaacccaggcagcgacatgaatgcaagaaaggactacatcacagcc
aagtacatcgagaggagatacgcaaggaagaagcacgcggataacgcggcgaagcttcac
agtctttgcgaggccgtcaaaacgagagatatttttggattgctccaagcttatgctgat
ggtgtggatcttacggaaaaaatcccactggccaacggacatcccaggctccctgccggg
cagtccctggtcgtccagcctgtgacacactatgctctctctctgttcctgttctcgggc
agtgggaacctggataaacagacagggaaaggcagcacagccctgcactactgctgcctg
accgacaatgccgagtgcctcaagttgctcctgcgggggaaggcctccatcgagatagca
aacgagtcaggagagactccgctggacattgccaagcgcctcaagcacgagcactgtgag
gagctgctgacccaagccttatctggaagatttaattctcacgttcacgttgaatatgaa
tggcgactactccacgaagacctggatgaaagtgatgacgacatggatgagaaattgcag
cccagtcccaaccggcgggaagaccggcccatcagcttctaccagctgggctccaaccag
cttcagtctaacgctgtatctttggccagagatgctgcaaaccttgccaaggagaagcag
agggctttcatgcccagcatcttgcagaatgagacttacggagccctcctgagtggcagc
ccacctcccgcccagcctgcagcccccagcaccaccagcgcccccccgcttcctccacgg
aatgttggcaaagcccacatcccagaccgcgtccatccctggcttgatgaggacgtccct
gagcacagaaggcagctacaagatgaagccacacagtcgcatctcctccctgtcaaaccc
ccaggctggctggtcggggcccaggatcccctgacccccacgccgcccccacccgttgcc
aagacgcccagcgtaatggaagccttgagccagccgagcaagcctgccccgcctgggatc
tcacagatcaggcccccacctctgcccccacagccgcccagccgcctcccgcagaagaag
cctgcgccggggtccaggagatccaccggggagctgaagccactggcactggtccttagc
tctggagttgacggatcttgtgtcacaccttttgcagatgaaaatgctgactctccagaa
cccatttatccagggctgccagtggatctctctgcaacggaagctctgggtcctctgtcc
aatgctatggtcctgcagccccctgcacccatgcctaggaagtcgcaggcaaccaagttg
aagcctaagcgggtgaaagcgctctataactgtgtggctgacaaccccgatgagctcacc
ttctccgagggggatgtgatcatcgtggacggggaggaggaccaggagtggtggattggc
cacattgatggagatcctggtcgcaaaggcgcattcccggtgtcatttgtgcactttatc
gctgactga

>gi568815596r:9306837_9518697|GENSCAN_predicted_peptide_2|209_aa
MTGVGSAAGRSPQQESQTSRKCEGEAGVRSFSEKHHPGQNERKLSVQTAVCGTFEDSQIV
FNSISVDSSLGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLKLSEGK
GLEGPLDLINYIDVAQDVLHRHALYLIIRMVCYDDGLGAGKSLLALKTTDASNEEYSLWV
YQCNSLEQAQAICKVLSTAFDSVLTSEKP

>gi568815596r:9306837_9518697|GENSCAN_predicted_CDS_2|630_bp
atgacaggggtcggatcagcagctggtcgctctcctcagcaggaatcgcagacatcccga
aagtgtgagggcgaagcgggggtgcgtagtttctctgaaaagcatcacccaggtcagaat
gaaaggaaactctctgtgcagaccgctgtatgtgggacctttgaagacagtcaaatagtg
ttcaattctatatctgtggattctagccttgggggtctttcacgatccagcactgtggcc
agcctcgacacagattccaccaaaagctcaggacaaagcaacaataattcagatacctgt
gcagaatttcgaataaaatatgttggtgccattgagaaactgaaactctccgagggaaaa
ggccttgaagggccattagacctgataaattatatagacgttgcccaggatgttttgcac
aggcatgctctctacttaataatccggatggtgtgttacgatgacggtctgggggcggga
aaaagcttactggctctgaagaccacagatgcaagcaatgaggaatacagcctgtgggtt
tatcagtgcaacagcctggaacaagcacaagccatttgcaaggttttatccaccgctttt
gactctgtattaacatctgagaaaccctga

>gi568815596r:9306837_9518697|GENSCAN_predicted_peptide_3|564_aa
MLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDF
SRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPV
FALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININ
NPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVE
GTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGE
QNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQR
VSGILVKRNFNYHILSPCDLSNYTDLAMSTVKQTQAIPYTGPFNLLCYQLQKLTGDVEEL
EIQEKPALKVFKNITVIQEPGMVVLEWLANPSNDMYADTVTTVILEVQSNPKIRKGAVQK
VSKKLEMHVYSKRLEIMLQDIFGEDCVSVKDDSILSVTVDGKTANLNLETRTVECEEGSE
DDESLREMVELAAQRLYEALTPVH

>gi568815596r:9306837_9518697|GENSCAN_predicted_CDS_3|1695_bp
atgctgtataccgagacagatttggaagaaagcatggacaaaattgaaactatcaacttt
catgaagttaaggaagttgcgggaatcaagttttggtgttaccatgcaggtcacgtccta
ggagccgccatgttcatgattgagatcgcaggcgtgaagcttttgtacactggtgatttc
tcaagacaagaagataggcacttaatggcagctgaaattcctaatattaagcctgatatt
cttatcattgaatctacttatgggacccatatccatgagaaacgtgaagagcgagaagca
agattctgtaacactgtccacgatattgtaaacagaggaggcaggggtctcattcctgtc
tttgctcttggaagggctcaggagctgctcttgattctagatgagtactggcagaatcac
ccagaactacatgacattccaatatactatgcatcatctttggccaagaagtgtatggca
gtgtaccagacatatgtaaatgccatgaatgacaaaatccgcaaacagatcaacatcaat
aatccctttgttttcaaacacattagtaacctcaagagcatggatcattttgatgacatt
ggtcccagtgttgtaatggcctccccaggcatgatgcaaagtggcttatccagagaatta
tttgaaagctggtgtactgataagaggaatggtgtcattatagcgggatactgtgtagaa
gggacacttgccaagcacatcatgtctgaacctgaagaaatcactactatgtctggacag
aagttaccactgaaaatgtctgttgattacatttctttctcagctcacacggattaccag
caaaccagtgaatttattcgtgctttgaaaccgcctcatgtgattttagtccatggagaa
cagaatgaaatggccagattgaaagcagcactgattcgagaatatgaagataacgatgaa
gttcacatagaggttcataatcctcggaatacagaagcagtgaccttaaacttcagagga
gaaaaactagccaaggttatgggatttttagcagacaaaaaaccagaacaaggccagcgg
gtctcaggaatacttgttaaaagaaactttaattatcacatactttctccttgcgacctg
tccaattatactgacctggccatgagcacggtgaagcagacccaagccattccatatact
ggtccctttaatttgctctgttaccagctgcagaaattgacaggtgatgtggaagaatta
gaaattcaagaaaaacctgctctgaaagtgttcaaaaatattactgtaatacaagaacca
ggcatggtggtattagaatggctggcaaacccttctaatgatatgtatgcagatacagta
acaactgtgatattggaagttcagtcaaatcccaaaataagaaaaggtgcagtacagaag
gtttctaaaaaattagaaatgcacgtttacagcaagaggttggagatcatgctccaggac
atatttggagaagactgtgtaagtgtaaaggatgactctattcttagcgtcacagtggac
gggaaaactgccaaccttaacttggagacacggactgtagaatgtgaagagggaagtgaa
gacgatgaatccctccgagaaatggtggagctggctgcacagagactgtacgaggccctg
acgccagttcactga

>gi568815596r:9306837_9518697|GENSCAN_predicted_peptide_4|213_aa
MALCEAAGCGSALLWPRLLLFGDSITQLLQATWMYTCRKCDVLNRGFSGYNTRWAKIILP
RLIRKGNSLDIPVAVTIFFGANDSALKDENPKQHIPLEEYAANLKSMVQYLKSVDIPENR
VILITPTPLCETAWEEQCIIQGCKLNRLNSVVGEYANACLQVAQDCGTDVLDLWTLMQDS
QGKWSPVGKSYYHVDAESPVTFGGPESLSRSGP

>gi568815596r:9306837_9518697|GENSCAN_predicted_CDS_4|642_bp
atggcgctgtgcgaggccgcgggctgcgggagtgccctgctctggcctcgcttgttgctc
ttcggggactccatcacccagttgctccaggccacctggatgtatacgtgcagaaaatgt
gatgttctgaatcgtggattttcaggttacaataccaggtgggccaaaattatccttcca
agattaatcaggaaaggaaacagtttggacatcccagtagcagttacaattttctttggg
gccaatgacagtgcactaaaagatgagaatcccaagcagcacattcccctggaggagtac
gctgcgaacctaaagagcatggtgcagtacctgaagtccgtggacatccctgagaatcga
gtcattctcatcacgccgaccccactttgtgaaacagcctgggaagaacagtgcatcata
caaggttgcaaactaaatcgcctgaactctgttgttggtgaatatgccaatgcgtgttta
caagtggcccaagactgtgggactgacgtacttgacctgtggaccctgatgcaggacagc
cagggaaaatggtcaccagtgggaaagtcatactaccacgtggatgccgagtcaccagtc
acctttggaggccctgagagcctaagcagatctggaccctag

>gi568815596r:9306837_9518697|GENSCAN_predicted_peptide_5|434_aa
MEVFVQREADLVTTHELGHNFGAEHDPDGLAECAPNEDQGGKYVMYPIAVSGDHENNKMF
SNCSKQSIYKTIESKAQECFQERSNKVCGNSRVDEGEECDPGIMYLNNDTCCNSDCTLKE
GVQCSDRNSPCCKNCQFETAQKKCQEAINATCKGVSYCTGNSSECPPPGNAEDDTVCLDL
GKCKDGKCIPFCEREQQLESCACNETDNSCKVCCRDLSGRCVPYVDAEQKNLFLRKGKPC
TVGFCDMNGKCEKRVQDVIERFWDFIDQLSINTFGKFLADNIVGSVLVFSLIFWIPFSIL
VHCVDKKLDKQYESLSLFHPSNVEMLSSMDSASVRIIKPFPAPQTPGRLQPAPVIPSAPA
APKLDHQRMDTIQEDPSTDSHMDEDGFEKDPFPNSSTAAKSFEDLTDHPVTRSEKAASFK
LQRQNRVDSKETEC

>gi568815596r:9306837_9518697|GENSCAN_predicted_CDS_5|1305_bp
atggaggtgtttgtccaaagggaagctgacctggttacaactcatgaattgggacataat
tttggagcagaacatgatccggatggtctagcagaatgtgccccgaatgaggaccaggga
gggaaatatgtcatgtatcccatagctgtgagtggcgatcacgagaacaataagatgttt
tcaaactgcagtaaacaatcaatctataagaccattgaaagtaaggcccaggagtgtttt
caagaacgcagcaataaagtttgtgggaactcgagggtggatgaaggagaagagtgtgat
cctggcatcatgtatctgaacaacgacacctgctgcaacagcgactgcacgttgaaggaa
ggtgtccagtgcagtgacaggaacagtccttgctgtaaaaactgtcagtttgagactgcc
cagaagaagtgccaggaggcgattaatgctacttgcaaaggcgtgtcctactgcacaggt
aatagcagtgagtgcccgcctccaggaaatgctgaagatgacactgtttgcttggatctt
ggcaagtgtaaggatgggaaatgcatccctttctgcgagagggaacagcagctggagtcc
tgtgcatgtaatgaaactgacaactcctgcaaggtgtgctgcagggacctttctggccgc
tgtgtgccctatgtcgatgctgaacaaaagaacttatttttgaggaaaggaaagccctgt
acagtaggattttgtgacatgaatggcaaatgtgagaaacgagtacaggatgtaattgaa
cgattttgggatttcattgaccagctgagcatcaatacttttggaaagtttttagcagac
aacatcgttgggtctgtcctggttttctccttgatattttggattcctttcagcattctt
gtccattgtgtggataagaaattggataaacagtatgaatctctgtctctgtttcacccc
agtaacgtcgaaatgctgagcagcatggattctgcatcggttcgcattatcaaacccttt
cctgcgccccagactccaggccgcctgcagcctgcccctgtgatcccttcggcgccagca
gctccaaaactggaccaccagagaatggacaccatccaggaagaccccagcacagactca
catatggacgaggatgggtttgagaaggaccccttcccaaatagcagcacagctgccaag
tcatttgaggatctcacggaccatccggtcaccagaagtgaaaaggctgcctcctttaaa
ctgcagcgtcagaatcgtgttgacagcaaagaaacagagtgctaa