GENSCAN 1.0	Date run:  5-Nov-116	Time: 14:36:43

Sequence gi568815597r:28505372_28722081 : 216710 bp : 47.64% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +  12785  12937  153  1  0   64  100    74 0.132   4.21
 1.02 Intr +  24487  24568   82  0  1   50  110    96 0.240   7.21
 1.03 Intr +  26432  26619  188  0  2   76   96   103 0.981   9.31
 1.04 Intr +  26800  26979  180  0  0   31   90   232 0.999  17.76
 1.05 Intr +  29679  29775   97  2  1  135   94   131 0.999  17.98
 1.06 Intr +  29887  30009  123  2  0  102  123   137 0.999  19.16
 1.07 Intr +  30500  30655  156  0  0  129   85   194 0.999  23.18
 1.08 Intr +  30891  31010  120  1  0  104   97    56 0.996   8.57
 1.09 Intr +  31376  31528  153  0  0  132  101   110 0.999  16.74
 1.10 Term +  32461  32636  176  2  2  125   45   188 0.999  16.12
 1.11 PlyA +  32831  32836    6                               1.05

 2.00 Prom +  47431  47470   40                              -3.76
 2.01 Init +  47740  47766   27  0  0   76   86    40 0.576   0.97
 2.02 Intr +  48269  48366   98  1  2  101  106   173 0.979  19.21
 2.03 Intr +  55262  55361  100  2  1  102   67    27 0.991   2.11
 2.04 Intr +  55975  56027   53  0  2   91   96    67 0.993   5.51
 2.05 Intr +  59332  59463  132  1  0  119   69   153 0.999  16.26
 2.06 Intr +  61923  62042  120  0  0   70   75   120 0.994   8.51
 2.07 Intr +  65805  65967  163  0  1   79   91   241 0.999  23.48
 2.08 Intr +  66496  66529   34  0  1   99  116    59 0.999   7.60
 2.09 Term +  72129  72265  137  1  2  128   42   196 0.999  17.18
 2.10 PlyA +  73050  73055    6                              -0.45

 3.05 PlyA -  73176  73171    6                               1.05
 3.04 Term -  73309  73260   50  2  2   91   43    12 0.674  -5.53
 3.03 Intr -  74216  74162   55  2  1  106  106    52 0.851   7.35
 3.02 Intr -  74610  74541   70  2  1  107   98    29 0.823   4.98
 3.01 Init -  75781  75723   59  1  2   58   94    37 0.563   2.08
 3.00 Prom -  75861  75822   40                              -7.26

 4.00 Prom +  80369  80408   40                              -0.36
 4.01 Init +  87141  87373  233  2  2  111   80   400 0.985  39.23
 4.02 Term +  88323  88746  424  0  1  134   41   508 0.954  45.47
 4.03 PlyA +  90053  90058    6                               1.05

 5.07 PlyA -  90796  90791    6                               1.05
 5.06 Term -  98203  98168   36  1  0  120   41    39 0.652  -0.26
 5.05 Intr - 100089 100001   89  1  2  104   94    71 0.909   8.99
 5.04 Intr - 107990 107876  115  2  1  111   77   163 0.994  17.52
 5.03 Intr - 112659 112582   78  0  0   48   94   123 0.994   8.65
 5.02 Intr - 116794 116600  195  1  0   82   48   183 0.663  13.31
 5.01 Init - 118646 118575   72  2  0   66   87    42 0.683   2.97
 5.00 Prom - 119846 119807   40                              -2.56

 6.05 PlyA - 123406 123401    6                               1.05
 6.04 Term - 137599 137382  218  2  2   43   55   157 0.195   5.21
 6.03 Intr - 149240 148631  610  2  1   97   55   130 0.002   2.59
 6.02 Intr - 150843 150668  176  1  2    4   55   115 0.235  -0.54
 6.01 Init - 151498 151249  250  1  1   45   36   143 0.833   2.43
 6.00 Prom - 151951 151912   40                              -6.66

 7.00 Prom + 159186 159225   40                              -5.46
 7.01 Init + 163413 163468   56  2  2   30   89   151 0.652   8.16
 7.02 Intr + 184703 184815  113  2  2   31   87   124 0.952   6.62
 7.03 Intr + 186214 186338  125  2  2  124   86    68 0.970  10.50
 7.04 Intr + 187571 187674  104  1  2   83  115   100 0.998  11.17
 7.05 Intr + 191556 191713  158  0  2   72   54   114 0.958   6.05
 7.06 Intr + 197067 197198  132  1  0  102   66   133 0.987  13.12
 7.07 Intr + 198821 198958  138  0  0   81  111    52 0.976   7.24
 7.08 Intr + 205149 205271  123  1  0   61   91    69 0.927   5.06
 7.09 Term + 208702 209402  701  2  2   97   36   637 0.884  53.10
 7.10 PlyA + 212817 212822    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term - 149485 149324  162  1  0   72   52   146 0.911   7.34


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815597r:28505372_28722081|GENSCAN_predicted_peptide_1|475_aa
MQILGWPPGAAGLFVFLSHPGRGQRPAERMLWGSSRPGGERRSSLWPTCTKDRKMSPKRI
AKRRSPPADAIPKSKKVKVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIP
EDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSA
GDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVM
LTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAF
CGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHT
VCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPAVSSVACGASVGYAVTKDGRV
FAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVKDKEQS

>gi568815597r:28505372_28722081|GENSCAN_predicted_CDS_1|1428_bp
atgcagatcctgggatggccgccaggggccgccgggctctttgttttcctttctcacccg
ggtcggggccagaggcctgcagagcgcatgctctggggcagttcgcggcccggcggggag
cgccggagttccttgtggccgacgtgcaccaaggacaggaagatgtcacccaagcgcata
gctaaaagaaggtcccccccagcagatgccatccccaaaagcaagaaggtgaaggtctca
cacaggtcccacagcacagaacccggcttggtgctgacactaggccagggcgacgtgggc
cagctggggctgggtgagaatgtgatggagaggaagaagccggccctggtatccattccg
gaggatgttgtgcaggctgaggctgggggcatgcacaccgtgtgtctaagcaaaagtggc
caggtctattccttcggctgcaatgatgagggtgccctgggaagggacacatcagtggag
ggctcggagatggtccctgggaaagtggagctgcaagagaaggtggtacaggtgtcagca
ggagacagtcacacagcagccctcaccgatgatggccgtgtcttcctctggggctccttc
cgggacaataacggtgtgattggactgttggagcccatgaagaagagcatggtgcctgtg
caggtgcagctggatgtgcctgtggtaaaggtggcctcaggaaacgaccacttggtgatg
ctgacagctgatggtgacctctacaccttgggctgcggggaacagggccagctaggccgt
gtgcctgagttatttgccaaccgtggtggccggcaaggcctcgaacgactcctggtcccc
aagtgtgtgatgctgaaatccaggggaagccggggccacgtgagattccaggatgccttt
tgtggtgcctatttcacctttgccatctcccatgagggccacgtgtacggcttcggcctc
tccaactaccatcagcttggaactccgggcacagaatcttgcttcataccccagaaccta
acatccttcaagaattccaccaagtcctgggtgggcttctctggtggccagcaccataca
gtctgcatggattcggaaggaaaagcatacagcctgggccgggctgagtatgggcggctg
ggccttggagagggtgctgaggagaagagcatacccaccctcatctccaggctgcctgct
gtctcctcggtggcttgtggggcctctgtggggtatgctgtgaccaaggatggtcgtgtt
ttcgcctggggcatgggcaccaactaccagctgggcacagggcaggatgaggacgcctgg
agccctgtggagatgatgggcaaacagctggagaaccgtgtggtcttatctgtgtccagc
gggggccagcatacagtcttattagtcaaggacaaagaacagagctga

>gi568815597r:28505372_28722081|GENSCAN_predicted_peptide_2|287_aa
MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEK
CLHKINGKPLPGATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVY
PSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASRV
KPVEYSQMYSYSYNQYYQQYQNYYAQWGYDQNTGSYSYSYPQYGYTQSTMQTYEEVGDDA
LEDPMPQLDVTEANKEFMEQSEELYDALMDCHWQPLDTVSSEIPAMM

>gi568815597r:28505372_28722081|GENSCAN_predicted_CDS_2|864_bp
atggcggccagcctgtggatgggcgacctggaaccctacatggatgagaacttcatctcc
agagcctttgccaccatgggggagaccgtaatgagcgtcaaaattatccgaaaccgcctc
actgggatcccagctggctactgctttgtagaatttgcagatttggccacagctgagaag
tgtttgcataaaattaatgggaaaccccttccaggagccacacctgcgaaacgttttaaa
ctgaactatgccacttacgggaaacaaccagataacagccctgagtattccctctttgtg
ggggacctgaccccggacgtggatgatggcatgctgtatgaattcttcgtcaaagtctac
ccctcctgtcggggaggcaaggtggttttggaccagacaggcgtgtctaagggttatggt
tttgtgaaattcacagatgaactggaacagaagcgagccctgacggagtgccagggagca
gtgggactggggtctaagcctgtgcggctgagcgtggcaatccctaaagcgagccgtgta
aagccagtggaatatagtcagatgtacagttatagctacaaccagtattatcagcagtac
cagaactactatgctcagtggggctatgaccagaacacaggcagctacagctacagttac
ccccagtatggctatacccagagcaccatgcagacatatgaagaagttggagatgatgca
ttggaagaccccatgccacagctggatgtgactgaggccaacaaggagttcatggaacag
agtgaggagctgtatgacgctctgatggactgtcactggcagcccctggacacagtgtct
tcagagatccctgccatgatgtag

>gi568815597r:28505372_28722081|GENSCAN_predicted_peptide_3|77_aa
MTDLVYRDPGVLKQVVMMDRLPPSFLAVCDTEEVSLFLELCFKIHVTCKAVLICDYGPME
LGQSLWEAEGKDPGHFR

>gi568815597r:28505372_28722081|GENSCAN_predicted_CDS_3|234_bp
atgactgacttagtctacagagatcccggcgtacttaagcaggtagtaatgatggacagg
ttgcccccaagtttcctggcagtgtgtgatactgaggaggtgagcttgtttctggagctg
tgctttaagattcatgttacatgtaaagctgtcctcatttgtgactatggacctatggag
ttgggacaatctctatgggaagcagaaggcaaggaccccggtcattttaggtag

>gi568815597r:28505372_28722081|GENSCAN_predicted_peptide_4|218_aa
MEAEGCRYQFRVALLGDAAVGKTSLLRSYVAGAPGAPEPEPEPEPTVGAECYRRALQLRA
GPRVKLQLWDTAGHERFRCITRSFYRNVVGVLLVFDVTNRKSFEHIQDWHQEVMATQGPD
KVIFLLVGHKSDLQSTRCVSAQEAEELAASLGMAFVETSVKNNCNVDLAFDTLADAIQQA
LQQGDIKLEEGWGGVRLIHKTQIPRSPSRKQHSGPCQC

>gi568815597r:28505372_28722081|GENSCAN_predicted_CDS_4|657_bp
atggaggccgagggctgccgctaccaatttcgggtcgcgctgctgggggacgcggcggtg
ggcaagacgtcgctgctgcggagctacgtggcaggcgcgcctggcgccccggagccggag
cccgagcccgagcccacggtgggcgccgagtgctaccgccgcgcgctgcagctgcgggcc
gggccgcgggtcaagctgcaactctgggacaccgcgggccacgagcgcttcaggtgcatc
accaggtccttttaccggaatgtggtgggtgtcctgctggtctttgatgtgacaaacagg
aagtcctttgaacacatccaagactggcaccaggaggtcatggccactcagggcccggac
aaggtcatcttcctgctggttggccacaagagtgacctgcagagcacccgctgtgtctca
gcccaggaggccgaggagctagctgcctccctgggcatggccttcgtggagacctcggtt
aaaaacaactgcaatgtggacctggcctttgacaccctcgctgatgctatccagcaggcc
ctgcagcagggggacatcaagctagaagagggctgggggggtgtccggctcatccacaag
acccaaatccccaggtcccccagcaggaagcagcactcaggcccatgccagtgttga

>gi568815597r:28505372_28722081|GENSCAN_predicted_peptide_5|194_aa
MAASHFTGLTAVADVIKDLDTQIALIGLGPHSSKKKQDLDKLYELKSKARQIMNQFGPSA
LINLSNFSSIKPEPASTPPQGSMANSTAVVLTKKKLQDLVREVDPNEQLDEDVEEMLLQI
ADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQWNMWIPGFGSEEIRPYKKACTTEA
HKQRMALIRKTTKK

>gi568815597r:28505372_28722081|GENSCAN_predicted_CDS_5|585_bp
atggctgcctctcatttcaccgggctcacagctgttgctgatgtaattaaagatctagac
actcagatagctttaattggccttggtcctcacagctccaaaaagaaacaggatctcgat
aagctctatgagctgaagtccaaagctcggcagattatgaaccagtttggcccctcagcc
ctaatcaacctctccaatttctcatccataaaaccggaaccagccagcacccctccacaa
ggctccatggccaatagtactgcagtggtattgaccaagaagaaattacaggacttagta
agagaagtggatcctaatgagcagttggatgaagatgtggaggagatgctgctgcagatt
gctgatgattttatcgagagtgtggtgacagcagcctgtcagcttgcgcggcatcgcaag
tctagcaccctggaggtgaaagatgtccagctgcatttagagcgccagtggaacatgtgg
atcccaggatttggctctgaagaaatccgaccctacaaaaaagcttgcaccacagaagct
cacaaacagagaatggcattgatccggaaaacaaccaagaaataa

>gi568815597r:28505372_28722081|GENSCAN_predicted_peptide_6|417_aa
MTVDYCKLNQVVTPVAAAEPDVALLLEQINTSPGTCYAATDLANAFFSIPVHKAHERQFA
FSLQGRQYTFTILPQGYINSHKAVTRKTASFEWSPKQDKALQQVQAVVQAALPFGPYDPA
DPMVLEVSVADRVAVWCLWQAPKGQRFILAGIDTYSKYGFAYLACNASAKTIIRGLTECL
IHHHGIPHSTASDHGTDFTAKQVQQWALAHGIHLSYHVPHYPEAAGLIEQRNGLLKSQLQ
RQLGDNSLQGWGKVLQKAVYALNQHPIYGTVSPITRIQGSRNQEVEMEVAPLTITLSDPL
ANFLLPVPMALCSADLEVLVLEGGMLPPGGTRIPLNWKLRLPPRPVEEQEREEGVRTQTY
SGSVFEGPGCGRDGAVRIQALGKGLTERIRLGEDAAVGTRALRRDLGNGDGCEFSGI

>gi568815597r:28505372_28722081|GENSCAN_predicted_CDS_6|1254_bp
atgacagtggattattgtaagcttaaccaagtggtgactccagttgcagctgctgaacca
gatgtggctttattgcttgagcaaattaacacatctcctggtacctgttatgcagctact
gatttggcaaatgcctttttctccattcctgtccacaaggcccacgagaggcaattcgcc
ttcagcttgcaaggccggcaatatactttcactatcttacctcaggggtatatcaactct
cacaaagctgtgacccgaaagactgccagttttgagtggagtccaaaacaggacaaggct
ctgcaacaggtccaggctgttgtgcaagctgctctgccatttggaccatatgacccagca
gatccaatggtgcttgaggtgtcagtggcagatagggttgctgtttggtgcctttggcag
gcccccaaagggcagaggtttatcctcgctggaatagacacttactctaaatatgggttt
gcctatcttgcatgcaatgcttctgccaagactatcatccgtggacttacagaatgcctt
atccaccatcacggtattccacacagcactgcctctgaccacggcactgactttacagct
aaacaagtgcaacagtgggctcttgctcatggaattcacttgtcttaccatgttccccat
tatcctgaagcagctggattgatagaacagcggaatggccttttgaagtcacaattacaa
cgccaactaggtgacaattctttgcagggctggggaaaagttctccagaaggctgtgtat
gctctgaatcagcatccaatatatggtactgtttctcccataaccaggattcaagggtcc
aggaatcaagaggtggaaatggaagtggctccactcaccatcacccttagtgatccactg
gcaaacttcttgcttcctgttcccatggcattatgttctgctgacctagaggtcttagtt
ctagagggaggaatgctgccaccaggaggcacaaggattccattaaactggaagttaaga
ttgcctcctaggccagttgaggaacaagagcgggaggagggagtcaggacccagacctac
agtgggtcagtgttcgaaggaccaggttgtggacgagacggggctgtgaggattcaggct
cttgggaagggactgactgagaggatcaggctcggagaagacgcggctgtggggacccgg
gctctaagacgggacttagggaacggggacggatgcgagttctccggcatctga

>gi568815597r:28505372_28722081|GENSCAN_predicted_peptide_7|549_aa
MLRRLPALAARRPPARRRRLFIDGHFYNRIYEAGSENNTAVVAVETHTIHKIEEGIDTGT
IEANEDMEIAYPITCGESKAILLWKKFVCPGINVKCVKFNDQLISPKHFVHLAGKSTLKD
WKRAIRLGGIMLRKMMDSGQIDFYQHDKVCSNTCRSTKFDLLISSARAPVPGQQTSVVQT
PTSADGSITQIAISEESMEEAGLEWNSALTAAVTMATEEGVKKDSEEISEDTLMFWKGIA
DVGLMEEVVCNIQKEIEELLRGVQQRLIQAPFQVTDAAVLNNVAHTFGLMDTVKKVLDNR
RNQVEQGEEQFLYTLTDLERQLEEQKKQGQDHRLKSQTVQNVVLMPVSTPKPPKRPRLQR
PASTTVLSPSPPVQQPQFTVISPITITPVGQSFSMGNIPVATLSQGSSPVTVHTLPSGPQ
LFRYATVVSSAKSSSPDTVTIHPSSSLALLSSTAMQDGSTLGNMTTMVSPVELVAMESGL
TSAIQAVESTSEDGQTIIEIDPAPDPEAEDTEGKAVILETELRTEEKVVAEMEEHQHQVH
NVEIVVLED

>gi568815597r:28505372_28722081|GENSCAN_predicted_CDS_7|1650_bp
atgctccgtcgcctgcccgccctggccgctcgccgcccgcccgcccgacggagacgtttg
tttatcgatggacacttttacaacaggatttatgaagctgggtcggagaacaacacggca
gttgtagcagtagaaactcacacgatacacaaaattgaagaagggattgatacaggcact
atagaagcaaatgaggatatggaaattgcttaccccataacttgtggggagagcaaagcc
atcctcctctggaagaagtttgtatgtccaggaataaacgtgaagtgtgtcaagttcaat
gatcagttgatcagccccaagcactttgttcatctggctggcaagtccactctgaaggac
tggaagagagctattcgtctgggtgggatcatgctcaggaaaatgatggactccggacag
attgatttttaccaacatgacaaagtttgctccaatacctgcagaagcaccaaatttgat
cttctgatcagcagtgcaagagctccagtgccaggacagcagacaagtgtggtgcagaca
cccacttcggctgatggtagcatcacgcagattgccatctcagaagagagcatggaagag
gcagggctggaatggaactcagctctcaccgctgctgtcaccatggccacggaggagggt
gtaaagaaagactcagaggaaatttcagaggacactttgatgttctggaaaggaatagct
gatgtagggctgatggaagaggttgtctgcaatatacagaaggaaatagaggagctactc
aggggagttcagcagcggctcatccaggctcccttccaagtcacagatgctgctgttctc
aacaatgtagcacacacatttggcctaatggacacagtcaagaaggttttagacaacaga
aggaaccaagtagagcagggagaagaacagtttctctatactctgacagacttggaacgc
cagttggaggagcagaagaagcaaggccaggatcacaggctgaaatctcagacagttcaa
aatgtggtactgatgcctgtgagcactcctaagcctccaaaaaggccccggctccagcgg
ccagcctccaccactgtcttgagcccttctcctcctgtccagcagcctcagttcacagtc
atctcacccatcaccatcaccccagtgggtcagtcattttccatgggcaatattccagtg
gccaccctcagccagggctccagtcctgtgactgtccacacactgccttctggccctcag
ctcttccgctatgccacagtggtctcctctgccaagagcagctcaccagacacagtgacc
atccacccttcatctagcttggcgctgctgagctctactgccatgcaggatgggagtaca
ctgggcaacatgaccaccatggttagccctgtggaattggtggccatggagtccggccta
acctcggcaattcaggctgttgaaagcacctcagaggatgggcagaccatcattgagatt
gatccagccccggacccagaagctgaagatactgagggcaaagcagtcatcttggagaca
gagctgaggactgaggagaaagttgtggctgagatggaagaacaccagcatcaagttcac
aatgtggagattgtggtcttagaggattaa