GENSCAN 1.0	Date run:  8-Nov-116	Time: 11:22:11

Sequence gi568815590r:38044276_38250818 : 206543 bp : 44.24% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.04 PlyA -    171    166    6                               1.05
 1.03 Term -   2163   2096   68  1  2   89   37    43 0.775  -2.60
 1.02 Intr -   2439   2355   85  0  1   83   75   104 0.630   7.99
 1.01 Init -   7127   7041   87  2  0   55  103    78 0.587   6.64
 1.00 Prom -   7509   7470   40                              -6.36

 2.00 Prom +  11419  11458   40                              -1.06
 2.01 Init +  12141  12159   19  2  1   53   68   -16 0.499  -6.84
 2.02 Intr +  12806  12985  180  0  0  147  101   228 0.999  29.84
 2.03 Intr +  18856  18869   14  2  2   74   99     0 0.002  -5.80
 2.04 Intr +  28284  28388  105  2  0  116   45   107 0.392   9.61
 2.05 Intr +  28773  28821   49  2  1   82  101    56 0.352   4.55
 2.06 Term +  34682  34800  119  0  2  -24   45   123 0.050  -4.50
 2.07 PlyA +  34959  34964    6                               1.05

 3.06 PlyA -  34998  34993    6                               1.05
 3.05 Term -  40726  40565  162  1  0   26   33   137 0.067  -0.06
 3.04 Intr -  43781  43600  182  0  2   41   69   124 0.201   5.39
 3.03 Intr -  45460  45060  401  0  2   83   81   170 0.222   9.95
 3.02 Intr -  53985  53795  191  0  2   29  110    47 0.001  -0.62
 3.01 Init -  56836  56834    3  1  0   97   81     0 0.003   0.20
 3.00 Prom -  58135  58096   40                              -6.16

 4.00 Prom +  58934  58973   40                              -4.96
 4.01 Init +  61276  61463  188  0  2  104   94   111 0.875   9.84
 4.02 Intr +  62103  62169   67  0  1   70   94    57 0.931   3.41
 4.03 Intr +  62746  62891  146  0  2   57   80   132 0.876   8.38
 4.04 Intr +  66104  66192   89  2  2   70   71    47 0.885   0.81
 4.05 Intr +  66464  66558   95  0  2   93   75    72 0.929   6.08
 4.06 Intr +  70630  70725   96  0  0   61   88    88 0.987   6.31
 4.07 Intr +  72375  72450   76  2  1   80  115    43 0.999   5.29
 4.08 Intr +  74995  75088   94  2  1   67   59   140 0.985   8.02
 4.09 Intr +  76657  76874  218  1  2  106   87   115 0.997  11.35
 4.10 Intr +  84016  84183  168  2  0   87   87   152 0.979  14.92
 4.11 Intr +  84483  84676  194  1  2   74  113   144 0.998  14.71
 4.12 Intr +  89179  89271   93  0  0   73  105    48 0.960   5.16
 4.13 Intr +  91393  91491   99  0  0   71  100    26 0.822   2.41
 4.14 Term +  94689  94796  108  2  0  107   47    61 0.964   2.41
 4.15 PlyA +  95406  95411    6                               1.05

 5.08 PlyA -  97493  97488    6                               1.05
 5.07 Term - 100111  99998  114  1  0   64   49   162 0.951   8.47
 5.06 Intr - 101040 100947   94  2  1   90   67    27 0.460   0.77
 5.05 Intr - 101872 101688  185  1  2   50   90   236 0.995  18.59
 5.04 Intr - 102172 102014  159  1  0  104  105   313 0.849  34.78
 5.03 Intr - 104052 103925  128  1  2   58  111   143 0.998  14.00
 5.02 Intr - 104479 104366  114  2  0   72  123    80 0.346  10.32
 5.01 Init - 106543 106480   64  1  1   68   84    55 0.272   4.41
 5.00 Prom - 118553 118514   40                              -6.16

 6.05 PlyA - 119084 119079    6                               1.05
 6.04 Term - 119565 119395  171  0  0   87   33   226 0.998  14.83
 6.03 Intr - 125642 125527  116  0  2   47   92    92 0.930   5.67
 6.02 Intr - 132062 132000   63  0  0   69   79    93 0.963   5.19
 6.01 Init - 132596 132422  175  2  1   99   78    90 0.975   8.62
 6.00 Prom - 134260 134221   40                              -6.06

 7.00 Prom + 141120 141159   40                              -4.36
 7.01 Init + 150429 150440   12  2  0  110   89     4 0.685   2.65
 7.02 Intr + 163345 163491  147  0  0   50  109    55 0.384   4.23
 7.03 Intr + 164738 164992  255  1  0   85   97   146 0.997  12.84
 7.04 Term + 165733 166218  486  0  0   72   48   342 0.890  23.30
 7.05 PlyA + 167225 167230    6                               1.05

 8.00 Prom + 179158 179197   40                              -2.96
 8.01 Init + 188810 188939  130  1  1   79   82    40 0.232   2.81
 8.02 Intr + 190119 190309  191  1  2   54   51   122 0.222   4.40
 8.03 Intr + 193814 193934  121  1  1   63   40    54 0.435  -1.83
 8.04 Intr + 197975 198110  136  0  1   77   56    48 0.487   0.13
 8.05 Intr + 201467 201675  209  2  2   88   60   133 0.816   9.22
 8.06 Intr + 201958 202025   68  2  2   81   86    14 0.860  -0.88
 8.07 Intr + 203438 203560  123  1  0   50   58   119 0.459   5.88

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init +  49480  49615  136  0  1   59   38   121 0.811   4.50


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815590r:38044276_38250818|GENSCAN_predicted_peptide_1|79_aa
MPNTKNEKYKHVLQPGCRESSNCHPKSQQIGDDNDDDDDGSANFIGLLCGFEQWLTQCPR
KPRTIINFSMFVSQYPSGF

>gi568815590r:38044276_38250818|GENSCAN_predicted_CDS_1|240_bp
atgccaaacaccaagaatgagaagtacaagcacgttctccaacctggatgcagggagagc
tccaactgtcaccccaaatcacaacagattggcgacgacaatgatgatgatgatgatggt
agtgccaacttcataggattactgtgtggatttgaacagtggctgacacaatgcccacgg
aaaccaagaaccatcataaacttcagcatgtttgttagccagtatccttcaggattttaa

>gi568815590r:38044276_38250818|GENSCAN_predicted_peptide_2|161_aa
MHFFHRGTRIIYDRKFLMECRNSPVTKTPPRDLPTIPGVTSPSSDEPPMEASQSHLRNSP
EDKRAGGSKRQIFGFLVLHSFIHTLSASTMIHRLQVPAEKPTYHILHSAGTLTRDIRYGL
THEMKAQKLQQRLNDCSIEMNYRIIIFIMTLTNTESFVLLN

>gi568815590r:38044276_38250818|GENSCAN_predicted_CDS_2|486_bp
atgcattttttccaccgtggtaccaggatcatctatgaccggaaattcctgatggagtgt
cggaactcacctgtgaccaaaacacccccaagggatctgcccaccattccgggggtcacc
agcccttccagtgatgagccccccatggaagccagccagagccacctgcgcaatagccca
gaagataagcgggcgggcgggtctaagagacagatatttgggtttcttgtactacacagc
ttcattcatactctaagtgccagcaccatgattcatcgcctgcaggttccagcagaaaaa
cccacctaccacatcctgcattctgcagggactctcacaagagacattcgctatggccta
acccatgaaatgaaggcccagaagcttcagcagagactgaatgactgctccattgagatg
aactaccgcataattatcttcatcatgactttaacaaacacagaaagctttgttttgctt
aattga

>gi568815590r:38044276_38250818|GENSCAN_predicted_peptide_3|312_aa
MCYYREQETKGKYWTLEGLAELGGCTPAGAWISVFTLCSICTKLRKSHSKDERKHASEVL
VLPGRHFQLEEHTLSYMEKPQALIDLMQSIFLTHNPTWADCKQLLLSLFNTEEHRRVIQA
AHQRLEKNAPVGTGDVRQCARQALPIETDPGWDPNQAQDLLKLLRYQEALIQGIKTEGKK
ATNTGKVSEVYQKPDESPMLKPSGDYQPVQDLRAVNQVAAILHAIVPNPYTVLGQIPASA
AWFTCLDIKDAFFCILLAPSTKTCSLSSRPMDESARSRSSNSTDLAEEPRRSRKRQLPCY
DHTRGWSVNARL

>gi568815590r:38044276_38250818|GENSCAN_predicted_CDS_3|939_bp
atgtgttattatagggaacaggagaccaagggaaaatactggacactggaaggcctggct
gagcttggaggatgcacacctgctggggcatggatttctgtcttcacactttgctccatc
tgcacaaagctacgtaagagtcacagcaaagatgaacggaaacatgcatctgaggttttg
gttttgccaggcagacattttcaactggaagagcatactctctcctatatggaaaaaccc
caggctcttatcgacctaatgcagtccatcttcttaactcacaacccaacctgggctgac
tgcaaacagctccttctgtcactgttcaatacagaagaacaccgcagagtaatacaagcg
gctcatcagaggctagaaaaaaatgccccagtaggtacaggagatgtcagacagtgtgct
cggcaggctttgccaatagaaactgacccaggctgggacccaaatcaggcccaagatctg
ctgaagttgctgagataccaagaggctctaatacaaggaataaagactgaagggaagaag
gcaacaaacactggaaaggtttcagaagtctatcagaaaccagatgaaagccccatgtta
aaaccttctggtgactaccagcctgtacaagatttaagggcagtcaaccaggtagctgct
atactgcatgctattgtgcctaacccgtacactgtgcttggacaaatacctgctagtgct
gcttggttcacatgcttggacattaaagatgcattcttctgcatcctgttagccccttca
actaaaacctgcagcctcagttcaagaccaatggacgagtcagcaagatccagatcatcc
aactcgactgatcttgcagaggaaccaaggcgcagcaggaaaagacaactgccctgctac
gaccacaccagaggctggtcggtcaacgcacggctgtag

>gi568815590r:38044276_38250818|GENSCAN_predicted_peptide_4|576_aa
MAAAGAGPGQEAGAGPGPGAVANATGAEEGEMKPVAAGAAAPPGEGISAAPTVEPSSGEA
EGGEANLVDVSGGLETESSNGKDTLEGAGDTSEVMDTQAGSVDEENGRQLGEVELQCGIC
TKWFTADTFGIDTSSCLPFMTNYSFHCNVCHHSGNTYFLRKQANLKEMCLSALANLTWQS
RTQDEHPKTMFSKDKSKERDVFLVKEHPDPGSKDPEEDYPKFGLLDQDLSNIGPAYDNQK
QSSAVSTSGNLNGGIAAGSSGKGRGAKRKQQDGGTTGTTKKARSDPLFSAQRLPPHGYPL
EHPFNKDGYRYILAEPDPHAPDPEKLELDCWAGKPIPGDLYRACLYERVLLALHDRAPQL
KISDDRLTVVGEKGYSMVRASHGVRKGAWYFEITVDEMPPDTAARLGWSQPLGNLQAPLG
YDKFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYINLPEDTETAKSLPDTYKDKALI
KFKSYLYFEEKDFVDKAEKSLKQTPHSEIIFYKNGVNQGVAYKDIFEGVYFPAISLYKSC
TMSDMGWGAVVEHTLADVLYHVETEVDGRRSPPWEP

>gi568815590r:38044276_38250818|GENSCAN_predicted_CDS_4|1731_bp
atggcggcggcaggagcaggacctggccaggaagcgggtgccgggcctggcccaggagcg
gtcgcaaatgcaacaggggcagaagagggggagatgaagccggtggcagcgggagcagcc
gctcctcctggagaggggatctctgctgctccgacagttgagcccagttccggggaggct
gaaggcggggaggcaaacttggtcgatgtaagcggtggcttggagacagaatcatctaat
ggaaaagatacactagaaggtgctggggatacatcagaggtgatggatactcaggcgggc
tccgtggatgaagagaatggccgacagttgggtgaggtagagctgcaatgtgggatttgt
acaaaatggttcacggctgacacatttggcatagatacctcatcctgtctacctttcatg
accaactacagttttcattgcaacgtctgccatcacagtgggaatacctatttcctccgg
aagcaagcaaacttgaaggaaatgtgccttagtgctttggccaacctgacatggcagtcc
cgaacacaggatgaacatccgaagacaatgttctccaaagataagagtaaagaaagagat
gtattcttggtaaaggaacacccagatccaggcagtaaagatccagaagaagattacccc
aaatttggacttttggatcaggaccttagtaacattggtcctgcttatgacaaccaaaaa
cagagcagtgctgtgtctactagtgggaatttaaatgggggaattgcagcaggaagcagc
ggaaaaggacgaggagccaagcgcaaacagcaggatggagggaccacagggaccaccaag
aaggcccggagtgaccctttgttttctgctcagcgccttccccctcatggctacccattg
gaacacccgtttaacaaagatggctatcggtatattctagctgagcctgatccgcacgcc
cctgaccccgagaagctggaacttgactgctgggcaggaaaacctattcctggagacctc
tacagagcctgcttgtatgaacgggttttgttagccctacatgatcgagctccccagtta
aagatctcagatgaccggctgactgtggttggagagaagggctactctatggtgagggcc
tctcatggagtacggaaaggtgcctggtattttgaaatcactgtggatgagatgccacca
gataccgctgccagactgggttggtcccagcccctaggaaaccttcaagctcctttaggt
tatgataaatttagctattcttggcggagcaaaaagggaaccaagttccaccagtccatt
ggcaaacactactcttctggctatggacagggagacgtcctgggattttatattaatctt
cctgaagacacagagacagccaagtcattgccagacacatacaaagataaggctttgata
aaattcaagagttatttgtattttgaggaaaaagactttgtggataaagcagagaagagc
ctgaagcagactccccatagtgagataatattttataaaaatggtgtcaatcaaggtgtg
gcttacaaagatatttttgagggggtttacttcccagccatctcactgtacaagagctgc
acgatgagtgacatgggctggggcgccgtggtagagcacaccctggctgacgtcttgtat
cacgtggagacagaagtggatgggaggcgcagtcccccatgggaaccctga

>gi568815590r:38044276_38250818|GENSCAN_predicted_peptide_5|285_aa
MLLATFKLCAGSSYRHMRNMKGLRQQAVMAISQELNRRALGGPTPSTWINQVRRRSSLLG
SRLEETLYSDQELAYLQQGEEAMQKALGILSNQEGWKKESQQDNGDKVMSKVVPDVGKVF
RLEVVVDQPMERLYEELVERMEAMGEWNPNVKEIKVLQKIGKDTFITHELAAEAAGNLVG
PRDFVSVRCAKRRGSTCVLAGMATDFGNMPEQKGVIRAEHGPTCMVLHPLAGSPSKTKLT
WLLSIDLKGWLPKSIINQVLSQTQVDFANHLRKRLESHPASEARC

>gi568815590r:38044276_38250818|GENSCAN_predicted_CDS_5|858_bp
atgctgctagcgacattcaagctgtgcgctgggagctcctacagacacatgcgcaacatg
aaggggctgaggcaacaggctgtgatggccatcagccaggagctgaaccggagggccctg
gggggccccacccctagcacgtggattaaccaggttcggcggcggagctctctactcggt
tctcggctggaagagactctctacagtgaccaggagctggcctatctccagcagggggag
gaggccatgcagaaggccttgggcatccttagcaaccaagagggctggaagaaggagagt
cagcaggacaatggggacaaagtgatgagtaaagtggtcccagatgtgggcaaggtgttc
cggctggaggtcgtggtggaccagcccatggagaggctctatgaagagctcgtggagcgc
atggaagcaatgggggagtggaaccccaatgtcaaggagatcaaggtcctgcagaagatc
ggaaaagatacattcattactcacgagctggctgccgaggcagcaggaaacctggtgggg
ccccgtgactttgtgagcgtgcgctgtgccaagcgccgaggctccacctgtgtgctggct
ggcatggccacagacttcgggaacatgcctgagcagaagggtgtcatcagggcggagcac
ggtcccacttgcatggtgcttcacccgttggctggaagtccctctaagaccaaacttacg
tggctactcagcatcgacctcaaggggtggctgcccaagagcatcatcaaccaggtcctg
tcccagacccaggtggattttgccaaccacctgcgcaagcgcctggagtcccaccctgcc
tctgaagccaggtgttga

>gi568815590r:38044276_38250818|GENSCAN_predicted_peptide_6|174_aa
MGSAALKRFPPRSPRPTHRAGARGRLRMESSEGGRTTPANPRPGPAPSAAEPRKLRDGAL
FQFKMNYMPGTASLIEDIDTNLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVLLGEIDL
EKESDTPLQQVSIEEILEEQRVEQQTKLEAEKLKVQALKDRGLSIPRADTLDEY

>gi568815590r:38044276_38250818|GENSCAN_predicted_CDS_6|525_bp
atgggatccgctgccctgaagcgcttcccgccccgctccccacggccgacccatcgcgca
ggcgcccgcgggcgattgcgaatggagagcagcgaagggggtcggacgacgccagccaat
cccaggcccgggcccgccccttctgctgccgaaccccgaaagctgagggacggagcatta
tttcagttcaaaatgaactatatgcctggcaccgccagcctcatcgaggacattgacaca
aacttagtgctacatcagactgtggagcgtattcatgtgggcaaaaaatacggtgatatt
cctcgagggatttttgtggtcagaggagaaaatgtggtcctactaggagaaatagacttg
gaaaaggagagtgacacacccctccagcaagtatccattgaagaaattctagaagaacaa
agggtggaacagcagaccaagctggaagcagagaagttgaaagtgcaggccctgaaggac
cgaggtctttccattcctcgagcagatactcttgatgagtactaa

>gi568815590r:38044276_38250818|GENSCAN_predicted_peptide_7|299_aa
MPGQTSYSTEVPSTYRSSGNSPTPVSRWIYPQQDCQTEAPPLRGQVPGYPPSQNPGMTLP
HYPYGDGNRSVPQSGPTVRPQEDAWASPGAYGMGGRYPWPSSAPSAPPGNLYMTESTSPW
PSSGSPQSPPSPPVQQPKDSSYPYSQSDQSMNRHNFPCSVHQYESSGTVNNDDSDLLDSQ
VQYSAEPQLYGNATSDHPNNQDQSSSLPEECVPSDESTPPSIKKIIHVLEKVQYLEQEVE
EFVGKKTDKAYWLLEEMLTKELLELDSVETGGQDSVRQARKEAVCKIQAILEKLEKKGL

>gi568815590r:38044276_38250818|GENSCAN_predicted_CDS_7|900_bp
atgcctggccagaccagttactccacagaagttccaagtacttaccgttcatctggcaac
agcccaactccagtctctcgttggatctatccccagcaggactgtcagactgaagcaccc
cctcttagggggcaggttccaggatatccgccttcacagaaccctggaatgaccctgccc
cattatccttatggagatggtaatcgtagtgttccacaatcaggaccgactgtacgacca
caagaagatgcgtgggcttctcctggtgcttatggaatgggtggccgttatccctggcct
tcatcagcgccctcagcaccacccggcaatctctacatgactgaaagtacttcaccatgg
cctagcagtggctctccccagtcacccccttcacccccagtccagcagcccaaggattct
tcatacccctatagccaatcagatcaaagcatgaaccggcacaactttccttgcagtgtc
catcagtacgaatcctcggggacagtgaacaatgatgattcagatcttttggattcccaa
gtccagtatagtgctgagcctcagctgtatggtaatgccaccagtgaccatcccaacaat
caagatcaaagtagcagtcttcctgaagaatgtgtaccttcagatgaaagtactcctccg
agtattaaaaaaatcatacatgtgctggagaaggtccagtatcttgaacaagaagtagaa
gaatttgtaggaaaaaagacagacaaagcatactggcttctggaagaaatgctaaccaag
gaacttttggaactggattcagttgaaactgggggccaggactctgtacggcaggccaga
aaagaggctgtttgtaagattcaggccatactggaaaaattagaaaaaaaaggattatga

>gi568815590r:38044276_38250818|GENSCAN_predicted_peptide_8|326_aa
MDAGSLYEPVSPHWFYCKIIDSKETWIPFNSEDSQQLEEAYSSGKGCNGRVVPTDGGRYD
VHLGERMRYAVYWDELASEVRRCTWFYKGDKDNKYVPYSESFSQVLELMVHYQPVAGSDD
WGSTPTEQGRPRTVKRGVENISVDIHCVNDFRSVSLNLLQTHFKKAQENQQIGRVEFLPV
NWHSPLHSTGVDVDLQRITLPSINRLRHFTNDTILDVFFYNSPTYCQTIVDTVASEMNRI
YTLFLQRNPDFKGGVSIAGHSLGSLILFDILTNQKDSLGDIDSEKDSLNIVMDQGDTPTL
EEDLKKLQLSEFFDIFEKEKVDKEAL

>gi568815590r:38044276_38250818|GENSCAN_predicted_CDS_8|978_bp
atggatgctggcagcttgtatgaaccagtttctccccattggttttattgtaagataata
gattctaaggagacatggattcctttcaactctgaggattcacagcagctggaagaggca
tatagctctggaaaaggttgtaatgggagagttgttcctactgatgggggcagatatgat
gttcatttgggggagaggatgcggtatgctgtatactgggatgaactggcatcggaagtg
agacgatgtacgtggttttacaagggggacaaagacaataagtatgttccctactcggag
agcttcagccaagttttagagcttatggtgcattaccagccagttgcagggtctgatgat
tggggttcaacacccacggagcagggtcgaccaagaactgtgaagagaggagttgagaac
atctctgttgacattcattgtgttaatgattttcgcagtgtttccttgaacttgctacag
acacattttaagaaagcccaagaaaatcagcagattgggagggtagaatttcttccagtc
aactggcacagtcctttgcattctactggtgtggatgtagatctgcagcgaataaccctg
cccagcattaaccgcctcaggcacttcaccaatgacacaattctggatgtcttcttctac
aatagtcccacctactgtcagactattgtggacacagttgcttctgaaatgaaccgaata
tacacactttttctacagaggaaccctgatttcaaagggggtgtatccattgctggtcat
agtttaggttcgcttatattgtttgatatcctaacaaatcagaaagattctttgggggat
attgacagtgaaaaggattcgctaaatattgtaatggatcaaggagatacacctacacta
gaggaagatttgaagaaacttcagctctctgaattctttgatatctttgagaaggagaaa
gtagataaggaagctctg