GENSCAN 1.0	Date run:  4-Nov-116	Time: 21:33:06

Sequence gi568815590r:42075996_42293185 : 217190 bp : 45.88% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +  25546  25704  159  0  0   67   53   104 0.443   4.62
 1.02 Intr +  37600  37656   57  0  0   95   95     4 0.010   0.88
 1.03 Intr +  46563  46646   84  2  0   38  106    40 0.005   0.82
 1.04 Intr +  53092  53265  174  0  0   62  109   115 0.089  11.14
 1.05 Intr +  68627  68678   52  1  1   98   77    28 0.005   1.18
 1.06 Intr +  76795  76981  187  2  1  -32    2   198 0.003  -2.05
 1.07 Intr +  78866  78965  100  2  1   45   79   124 0.500   7.31
 1.08 Intr +  81946  82117  172  0  1   79   96   151 0.998  14.52
 1.09 Intr +  86286  86423  138  1  0   21   96    96 0.930   4.14
 1.10 Intr +  89076  89161   86  1  2   82   53    74 0.997   2.84
 1.11 Intr +  89432  89565  134  1  2   52   74   106 0.998   5.04
 1.12 Intr +  91169  91376  208  2  1   88   97   157 0.996  15.68
 1.13 Intr +  91671  91815  145  2  1   56  119    60 0.975   5.76
 1.14 Intr +  93197  93290   94  0  1  110   93    73 0.688   9.02
 1.15 Term +  95534  95630   97  2  1   93   42    83 0.647   1.64
 1.16 PlyA +  96738  96743    6                               1.05

 2.13 PlyA -  97004  96999    6                               1.05
 2.12 Term - 100156  99998  159  1  0  106   47   172 0.981  12.84
 2.11 Intr - 103068 102902  167  1  2  112   91   110 0.999  13.38
 2.10 Intr - 104071 103931  141  2  0  132   95   287 0.999  34.12
 2.09 Intr - 104347 104247  101  0  2   41   91   231 0.609  18.45
 2.08 Intr - 104690 104495  196  0  1  140   75   238 0.999  26.17
 2.07 Intr - 106027 105942   86  0  2   42   59   133 0.999   5.26
 2.06 Intr - 106895 106724  172  0  1   94   94   109 0.999  11.10
 2.05 Intr - 109177 109086   92  0  2   77  110    80 0.999   8.74
 2.04 Intr - 111577 111403  175  2  1   63   94   234 0.999  20.50
 2.03 Intr - 112021 111911  111  2  0   77   95   149 0.999  14.85
 2.02 Intr - 113076 112939  138  1  0   89   53    49 0.770   1.94
 2.01 Init - 117190 117031  160  1  1   95   31   164 0.539   9.39
 2.00 Prom - 119742 119703   40                              -4.26

 3.00 Prom + 121749 121788   40                              -2.26
 3.01 Init + 125711 125845  135  1  0   80   47   109 0.488   6.14
 3.02 Term + 126522 126644  123  2  0   81   44    60 0.471  -0.72
 3.03 PlyA + 128923 128928    6                               1.05

 4.03 PlyA - 129009 129004    6                               1.05
 4.02 Term - 133142 132844  299  0  2   30   48   234 0.632   9.03
 4.01 Init - 139207 139114   94  1  1   65   90    81 0.766   6.55
 4.00 Prom - 140453 140414   40                              -4.16

 5.00 Prom + 152924 152963   40                              -4.66
 5.01 Init + 163305 163420  116  2  2   86   80   109 0.962   7.58
 5.02 Intr + 166800 166970  171  0  0   85   35   108 0.154   4.26
 5.03 Intr + 167264 167321   58  2  1   76   41    53 0.051  -1.71
 5.04 Intr + 177737 177953  217  1  1   61   93   114 0.151   7.28
 5.05 Intr + 195475 195603  129  2  0  110    4    83 0.001   2.77
 5.06 Intr + 201633 201730   98  1  2   80  117   -20 0.000  -0.17
 5.07 Intr + 212639 212733   95  1  2   67  100   152 0.966  13.06
 5.08 Intr + 214161 214278  118  0  1  105  100   196 0.908  22.97
 5.09 Intr + 214864 215015  152  0  2  112   80     8 0.481   1.36

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init +  38561  38633   73  1  1  106  100    24 0.964   6.63
S.002 Intr - 189447 189296  152  0  2  121   41    93 0.874   6.86


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815590r:42075996_42293185|GENSCAN_predicted_peptide_1|628_aa
MQGQWPKKSDELLLSQDAESNADLKNLYVDSLVIEHMKANKAPKMPIKLRELTACSRYLG
CYKGWLVNSFSLERSPDPDPKRGFLDLVPKRIQGKSTKMKRGQAFFVNEAITALGKPVED
LLKLPDWGWSNITKTLDVAHCGFSVVWPWPACWTAWLQGRDTPHSPTVEGDQNSPSRTVF
DLQSGLGVSELYQSEMTVASTGPIGGLEPDNRASRQQRSIRGEERLPDTQSAAFRRRSVY
RHKIFFVAVIQTEVPPLFVIEFLHRVVDTFQDYFGVCSEPVIKDNVVVVYEVLEEMLDNG
FPLATESNILKELIKPPTILRTVVNTITGSTNVGDQLPTGQLSVVPWRRTGVKYTNNEAY
FDVIEEIDAIIDKSGSTITAEIQGVIDACVKLTGMPDLTLSFMNPRLLDDVSFHPCVRFK
RWESERILSFIPPDGNFRLLSYHVSAQNLVAIPVYVKHNISFRDSSSLGRFEITVGPKQT
MGKTIEGVTVTSQMPKGVLNMSLTPSQGTHTFDPVTKMLSWDVGKINPQKLPSLKGTMSL
QAGASKPDENPTINLQFKIQQLAISAFSAMELIKGGKGHQGELDRTETQQHQFSRTRHET
VSQYSGVFIPGEASYKIRHCESIVTPHL

>gi568815590r:42075996_42293185|GENSCAN_predicted_CDS_1|1887_bp
atgcagggtcagtggcccaaaaagagtgatgaattattgctgtcccaagatgcagagagt
aatgctgaccttaagaatttgtatgtagattctctagtcattgagcacatgaaggcgaac
aaagcccccaagatgcctatcaaactgagagagctcacggcctgctctaggtacctgggc
tgctacaaaggctggctagtaaactccttcagtctggaaaggagtcctgatccagacccc
aagagagggttcttagatctcgtgccaaaaagaattcagggcaagtccacaaaaatgaaa
cgaggccaggccttctttgtcaatgaagccatcacagctctgggcaaacccgtggaagac
ctccttaaactcccagattggggctggtcaaacatcacgaagacattggatgtggcccac
tgtggcttctcggtggtctggccatggcctgcctgctggacagcttggcttcagggcagg
gatacccctcattcaccaacagtggaaggtgatcagaacagcccatcacgcactgtcttc
gacctccaatcaggactcggggtctcggagctgtaccaatcggagatgaccgtggcctca
acagggccaatcgggggactcgagcccgacaacagggcaagccgccaacagcgatcaatc
agaggggaggagcggctcccagatacccaatcagcggccttcaggcgcagatctgtttac
cgccacaagatcttttttgtggccgtgatccagacggaggtcccccctctgtttgtcatt
gagtttcttcaccgagtggtggacacatttcaggattattttggagtctgttcagagcca
gtgatcaaagacaatgtagttgtggtttatgaggtattggaagagatgcttgacaatggt
tttccattggctaccgagtcgaacattcttaaagaactcataaagcctcctaccatcctt
cgaacggttgtcaacaccatcacaggaagcacgaatgtgggtgaccagcttcccactggg
cagctgtcagtggtgccttggcgacggactggggtgaaatataccaacaatgaggcctat
tttgatgtgattgaagagattgatgcaattattgataaatcaggctccacaattactgct
gagatccagggggtgattgatgcctgtgtcaagctgactggcatgccagaccttacactt
tccttcatgaaccctaggttgttggatgatgtcagcttccatccttgtgttcgtttcaaa
cgctgggaatctgagcgcatcctctccttcatccctcctgatggaaacttccgcctgctg
tcttaccatgtcagtgcacagaatctggttgcaatcccagtgtatgtcaaacataacatc
agtttccgggacagtagttcccttggacgctttgaaataacggtgggacccaagcagacg
atggggaagaccattgagggagtgactgtcaccagccagatgcccaagggggtcctgaac
atgagccttactccatcacaggggacacacacattcgacccagtcacaaagatgctgtct
tgggatgtaggaaaaataaatccacaaaagctaccaagtttgaaggggaccatgagtctt
caggctggagcttccaaaccagatgaaaaccccacaattaacctgcagtttaagatccag
cagctggccatttctgccttcagtgccatggaactaatcaagggaggaaaaggtcaccag
ggagaactggacagaactgaaacacagcaacaccagttctcaaggacaaggcatgaaacg
gtgtcgcagtactctggcgtctttattccaggagaggcttcttacaagataaggcactgc
gagtcgattgttacgccacacctgtaa

>gi568815590r:42075996_42293185|GENSCAN_predicted_peptide_2|565_aa
MDAMKRGLCCVLLLCGAVFVSPSQVGVQDPCVPPLKAVMLPEAPGVCVHLGHGVICRDEK
TQMIYQQHQSWLRPVLRSNRVEYCWCNSGRAQCHSVPVKSCSEPRCFNGGTCQQALYFSD
FVCQCPEGFAGKCCEIDTRATCYEDQGISYRGTWSTAESGAECTNWNSSALAQKPYSGRR
PDAIRLGLGNHNYCRNPDRDSKPWCYVFKAGKYSSEFCSTPACSEGNSDCYFGNGSAYRG
THSLTESGASCLPWNSMILIGKVYTAQNPSAQALGLGKHNYCRNPDGDAKPWCHVLKNRR
LTWEYCDVPSCSTCGLRQYSQPQFRIKGGLFADIASHPWQAAIFAKHRRSPGERFLCGGI
LISSCWILSAAHCFQERTYRVVPGEEEQKFEVEKYIVHKEFDDDTYDNDIALLQLKSDSS
RCAQESSVVRTVCLPPADLQLPDWTECELSGYGKHEALSPFYSERLKEAHVRLYPSSRCT
SQHLLNRTVTDNMLCAGDTRSGGPQANLHDACQGDSGGPLVCLNDGRMTLVGIISWGLGC
GQKDVPGVYTKVTNYLDWIRDNMRP

>gi568815590r:42075996_42293185|GENSCAN_predicted_CDS_2|1698_bp
atggatgcaatgaagagagggctctgctgtgtgctgctgctgtgtggagcagtcttcgtt
tcgcccagccaggttggtgtgcaggatccctgtgtcccgcccctcaaggctgtgatgctt
ccggaggctccaggggtctgtgtccatctgggccacggagtgatctgcagagatgaaaaa
acgcagatgatataccagcaacatcagtcatggctgcgccctgtgctcagaagcaaccgg
gtggaatattgctggtgcaacagtggcagggcacagtgccactcagtgcctgtcaaaagt
tgcagcgagccaaggtgtttcaacgggggcacctgccagcaggccctgtacttctcagat
ttcgtgtgccagtgccccgaaggatttgctgggaagtgctgtgaaatagataccagggcc
acgtgctacgaggaccagggcatcagctacaggggcacgtggagcacagcggagagtggc
gccgagtgcaccaactggaacagcagcgcgttggcccagaagccctacagcgggcggagg
ccagacgccatcaggctgggcctggggaaccacaactactgcagaaacccagatcgagac
tcaaagccctggtgctacgtctttaaggcggggaagtacagctcagagttctgcagcacc
cctgcctgctctgagggaaacagtgactgctactttgggaatgggtcagcctaccgtggc
acgcacagcctcaccgagtcgggtgcctcctgcctcccgtggaattccatgatcctgata
ggcaaggtttacacagcacagaaccccagtgcccaggcactgggcctgggcaaacataat
tactgccggaatcctgatggggatgccaagccctggtgccacgtgctgaagaaccgcagg
ctgacgtgggagtactgtgatgtgccctcctgctccacctgcggcctgagacagtacagc
cagcctcagtttcgcatcaaaggagggctcttcgccgacatcgcctcccacccctggcag
gctgccatctttgccaagcacaggaggtcgcccggagagcggttcctgtgcgggggcata
ctcatcagctcctgctggattctctctgccgcccactgcttccaggagagaacataccgg
gtggtccctggcgaggaggagcagaaatttgaagtcgaaaaatacattgtccataaggaa
ttcgatgatgacacttacgacaatgacattgcgctgctgcagctgaaatcggattcgtcc
cgctgtgcccaggagagcagcgtggtccgcactgtgtgccttcccccggcggacctgcag
ctgccggactggacggagtgtgagctctccggctacggcaagcatgaggccttgtctcct
ttctattcggagcggctgaaggaggctcatgtcagactgtacccatccagccgctgcaca
tcacaacatttacttaacagaacagtcaccgacaacatgctgtgtgctggagacactcgg
agcggcgggccccaggcaaacttgcacgacgcctgccagggcgattcgggaggccccctg
gtgtgtctgaacgatggccgcatgactttggtgggcatcatcagctggggcctgggctgt
ggacagaaggatgtcccgggtgtgtacaccaaggttaccaactacctagactggattcgt
gacaacatgcgaccgtga

>gi568815590r:42075996_42293185|GENSCAN_predicted_peptide_3|85_aa
MHAEATVDSQQKPELAAEMTQLRHQAISIDKAHLTKPHYESQRHHPSSTHMSCFSVKHSQ
TMIYPCYIFTINVYGAPAVPWHRLW

>gi568815590r:42075996_42293185|GENSCAN_predicted_CDS_3|258_bp
atgcatgcagaggccactgtggactcccagcagaagccagaactagcagctgagatgaca
cagctgagacatcaggccatctctattgataaggcccatctgaccaagccacactatgaa
agtcagaggcatcatccctcaagcacccacatgagctgcttctctgttaagcattcacag
acaatgatctacccatgctatatattcaccatcaacgtgtatggagcaccagccgtgccc
tggcacaggctctggtga

>gi568815590r:42075996_42293185|GENSCAN_predicted_peptide_4|130_aa
MESYTKAVFTGQKCLTQEGGRSGESCDAMAGEVQDPGFKCNHSVENHPLKSSNESPHDQH
SLLNGNAPPPKKASILTILDHIAGKQPHAHQTGPQLLLLMGGLPPVLSRQPTPVPLFYND
HQQGCSFIKM

>gi568815590r:42075996_42293185|GENSCAN_predicted_CDS_4|393_bp
atggaaagctacaccaaagctgtattcactggacaaaaatgcttgactcaggaaggaggc
cggagcggcgagtcctgtgatgccatggcgggagaggttcaggatccaggatttaagtgc
aaccattcagtggaaaaccatcctctcaagagttcaaatgagagtcctcatgaccagcac
tccctgctgaacggcaatgccccaccccccaaaaaagcctccatcctcaccatcttagac
cacattgcaggaaagcagccccatgcccaccagacaggcccacagctgctgctgctcatg
ggaggtctacctcccgtgctcagcaggcaacccaccccagtgccccttttctacaatgac
catcagcagggctgcagcttcataaaaatgtga

>gi568815590r:42075996_42293185|GENSCAN_predicted_peptide_5|385_aa
MALIPLPISFSLPLAALWATASAIPQVAWPDLLGPHPLRELRDTGSGHTQCDFHMMAAGP
DFVVMSRPLNEGPDHNQNAGSVSCYLQNPIHKREFCLLVGERSALEHLSTELDEFKGYTR
QQFCHESTPNKGVRVIYNPTHPPYCCAQFPLAATGPHILYSSNSELFKRGKGRGEQRKEE
VTWNAEKGESPSWVRPGCHLQAPPPRCLQGPEDPSVPLGSRSLRTGERFTCLPLLHIPPG
PTLGHLLLICVWDGFVLWQLVLPETGEQIAIKQCRQELSPRNRERWCLEIQIMRRLTHPN
VVAARDVPEGMQNLAPNDLPLLAMEYCQGGDLRKNVHFWWVDGSPSWSQGQLGALLPIVP
YDSTTQPASTCYLIRFPKAHTWVHS

>gi568815590r:42075996_42293185|GENSCAN_predicted_CDS_5|1155_bp
atggccctcatcccgcttcccatctccttctcgctccctttagccgccctctgggccact
gcgtctgccattcctcaggtggcctggcccgacctgcttggcccccatcccctccgggag
ctgagggacactggctctggccatacccagtgcgatttccacatgatggctgcaggaccg
gactttgtagtaatgagcaggccactcaacgaaggcccagatcataaccaaaatgcaggg
tctgtcagttgctacttgcagaatccaattcacaagcgcgagttctgcctcctggtgggt
gagcgttctgctctggagcatctaagcacagagttagatgaatttaaagggtacactcgc
cagcagttttgccatgagagtacaccgaacaaaggagtcagggtcatttataacccgacg
catccaccctactgctgtgcccagtttccattggctgcaacaggacctcacattctgtat
tctagcaactcagaactttttaaaagaggcaaaggcagaggagaacaaaggaaggaggag
gtaacgtggaatgctgagaaaggtgagtccccctcgtgggtgcggcccgggtgccacctg
caggccccgccgccccgctgcctgcaaggcccggaagacccctctgtgccgctgggaagt
cgcagcttgcggactggggagcgtttcacttgcctccccctcctccacattcctccagga
ccaactctaggccatctcctcctcatatgcgtctgggatggctttgttctgtggcaactg
gttctcccggaaacaggtgagcagattgccatcaagcagtgccggcaggagctcagcccc
cggaaccgagagcggtggtgcctggagatccagatcatgagaaggctgacccaccccaat
gtggtggctgcccgagatgtccctgaggggatgcagaacttggcgcccaatgacctgccc
ctgctggccatggagtactgccaaggaggagatctccggaagaatgttcacttctggtgg
gtggatggcagcccctcctggtctcaggggcagttgggtgccctcctccccattgttccc
tatgacagtaccacacagcctgctagtacatgttacctcattcgatttccaaaagctcac
acatgggtgcacagn