FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5937, 508 aa
  1>>>pF1KB5937 508 - 508 aa - 508 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6840+/-0.000861; mu= 15.8985+/- 0.052
 mean_var=68.5047+/-13.631, 0's: 0 Z-trim(106.6): 26  B-trim: 5 in 1/49
 Lambda= 0.154958
 statistics sampled from 9053 (9060) to 9053 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.65), E-opt: 0.2 (0.278), width:  16
 Scan time:  3.290

The best scores are:                                      opt bits E(32554)
CCDS12287.1 FARSA gene_id:2193|Hs108|chr19         ( 508) 3380 764.8       0


>>CCDS12287.1 FARSA gene_id:2193|Hs108|chr19              (508 aa)
 initn: 3380 init1: 3380 opt: 3380  Z-score: 4081.7  bits: 764.8 E(32554):    0
Smith-Waterman score: 3380; 100.0% identity (100.0% similar) in 508 aa overlap (1-508:1-508)

               10        20        30        40        50        60
pF1KB5 MADGQVAELLLRRLEASDGGLDSAELAAELGMEHQAVVGAVKSLQALGEVIEAELRSTKH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MADGQVAELLLRRLEASDGGLDSAELAAELGMEHQAVVGAVKSLQALGEVIEAELRSTKH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 WELTAEGEEIAREGSHEARVFRSIPPEGLAQSELMRLPSGKVGFSKAMSNKWIRVDKSAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 WELTAEGEEIAREGSHEARVFRSIPPEGLAQSELMRLPSGKVGFSKAMSNKWIRVDKSAA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 DGPRVFRVVDSMEDEVQRRLQLVRGGQAEKLGEKERSELRKRKLLAEVTLKTYWVSKGSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 DGPRVFRVVDSMEDEVQRRLQLVRGGQAEKLGEKERSELRKRKLLAEVTLKTYWVSKGSA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 FSTSISKQETELSPEMISSGSWRDRPFKPYNFLAHGVLPDSGHLHPLLKVRSQFRQIFLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 FSTSISKQETELSPEMISSGSWRDRPFKPYNFLAHGVLPDSGHLHPLLKVRSQFRQIFLE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 MGFTEMPTDNFIESSFWNFDALFQPQQHPARDQHDTFFLRDPAEALQLPMDYVQRVKRTH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MGFTEMPTDNFIESSFWNFDALFQPQQHPARDQHDTFFLRDPAEALQLPMDYVQRVKRTH
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 SQGGYGSQGYKYNWKLDEARKNLLRTHTTSASARALYRLAQKKPFTPVKYFSIDRVFRNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SQGGYGSQGYKYNWKLDEARKNLLRTHTTSASARALYRLAQKKPFTPVKYFSIDRVFRNE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 TLDATHLAEFHQIEGVVADHGLTLGHLMGVLREFFTKLGITQLRFKPAYNPYTEPSMEVF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 TLDATHLAEFHQIEGVVADHGLTLGHLMGVLREFFTKLGITQLRFKPAYNPYTEPSMEVF
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 SYHQGLKKWVEVGNSGVFRPEMLLPMGLPENVSVIAWGLSLERPTMIKYGINNIRELVGH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SYHQGLKKWVEVGNSGVFRPEMLLPMGLPENVSVIAWGLSLERPTMIKYGINNIRELVGH
              430       440       450       460       470       480

              490       500        
pF1KB5 KVNLQMVYDSPLCRLDAEPRPPPTQEAA
       ::::::::::::::::::::::::::::
CCDS12 KVNLQMVYDSPLCRLDAEPRPPPTQEAA
              490       500        




508 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 15:37:53 2016 done: Sat Nov  5 15:37:54 2016
 Total Scan time:  3.290 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]