GENSCAN 1.0	Date run:  8-Nov-116	Time: 05:02:56

Sequence gi568815597f:28638257_28843987 : 205731 bp : 46.95% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   6444   6536   93  2  0   81   80    86 0.601   7.48
 1.02 Term +   9937   9957   21  0  0   62   54    32 0.245  -4.49
 1.03 PlyA +  10257  10262    6                               1.05

 2.04 PlyA -  13257  13252    6                               1.05
 2.03 Term -  16600  16439  162  1  0   72   52   146 0.914   7.34
 2.02 Intr -  17958  17783  176  1  2    4   55   115 0.235  -0.54
 2.01 Init -  18613  18364  250  1  1   45   36   143 0.833   2.43
 2.00 Prom -  19066  19027   40                              -6.66

 3.00 Prom +  26301  26340   40                              -5.46
 3.01 Init +  30528  30583   56  2  2   30   89   151 0.652   8.16
 3.02 Intr +  51818  51930  113  2  2   31   87   124 0.952   6.62
 3.03 Intr +  53329  53453  125  2  2  124   86    68 0.970  10.50
 3.04 Intr +  54686  54789  104  1  2   83  115   100 0.998  11.17
 3.05 Intr +  58671  58828  158  0  2   72   54   114 0.958   6.05
 3.06 Intr +  64182  64313  132  1  0  102   66   133 0.987  13.12
 3.07 Intr +  65936  66073  138  0  0   81  111    52 0.976   7.24
 3.08 Intr +  72264  72386  123  1  0   61   91    69 0.927   5.06
 3.09 Term +  75817  76517  701  2  2   97   36   637 0.884  53.10
 3.10 PlyA +  79932  79937    6                               1.05

 4.00 Prom +  83892  83931   40                              -6.46
 4.01 Init +  98865  98891   27  2  0   79   92    28 0.670   2.06
 4.02 Intr +  99402  99426   25  2  1  105  115    16 0.785   3.60
 4.03 Intr + 100003 100082   80  2  2   80   86    23 0.784   0.57
 4.04 Intr + 104147 105730 1584  1  0  130   86   830 0.743  76.04
 4.05 Term + 111351 111368   18  2  0   96   42    26 0.302  -2.88
 4.06 PlyA + 112678 112683    6                               1.05

 5.00 Prom + 120609 120648   40                              -5.06
 5.01 Init + 137231 137288   58  1  1   83   99    74 0.646   8.05
 5.02 Term + 150654 150739   86  1  2   75   53    56 0.118  -1.38
 5.03 PlyA + 150918 150923    6                               1.05

 6.00 Prom + 165709 165748   40                              -6.26
 6.01 Init + 174128 174354  227  1  2   97  117   411 0.995  42.84
 6.02 Intr + 174471 174541   71  0  2  101   22    88 0.515   2.33
 6.03 Term + 176643 176686   44  1  2   64   55    64 0.283  -1.98
 6.04 PlyA + 177982 177987    6                               1.05

 7.04 PlyA - 182839 182834    6                               1.05
 7.03 Term - 187759 187562  198  1  0   79   37   105 0.896   1.90
 7.02 Intr - 188500 188436   65  2  2   54   94    94 0.962   5.04
 7.01 Init - 189428 189251  178  2  1   74  -29   174 0.533   3.72
 7.00 Prom - 190171 190132   40                              -4.26

 8.04 PlyA - 193461 193456    6                               1.05
 8.03 Term - 196970 196870  101  0  2   79   48    72 0.632   0.59
 8.02 Intr - 198844 198787   58  1  1  115  113   -14 0.709   2.26
 8.01 Init - 200295 200290    6  0  0  121   64     0 0.647   1.95

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815597f:28638257_28843987|GENSCAN_predicted_peptide_1|37_aa
MVFSKENTYSRTKMAKVAGALVTGKDNEFGESDTYSR

>gi568815597f:28638257_28843987|GENSCAN_predicted_CDS_1|114_bp
atggtcttcagtaaggaaaacacttactcaaggaccaagatggccaaggtggctggagct
ttggtaaccgggaaagacaatgagtttggagagtcagatacctacagccgctga

>gi568815597f:28638257_28843987|GENSCAN_predicted_peptide_2|195_aa
MTVDYCKLNQVVTPVAAAEPDVALLLEQINTSPGTCYAATDLANAFFSIPVHKAHERQFA
FSLQGRQYTFTILPQGYINSHKAVTRKTASFEWSPKQDKALQQVQAVVQAALPFGPYDPA
DPMVLEVSVADRVAVWCLWQAPQPLSSPNGPMNKVAMVAGMKVTNGLSNMDFHSPRLTWL
RPRLSAQFSSSRDQH

>gi568815597f:28638257_28843987|GENSCAN_predicted_CDS_2|588_bp
atgacagtggattattgtaagcttaaccaagtggtgactccagttgcagctgctgaacca
gatgtggctttattgcttgagcaaattaacacatctcctggtacctgttatgcagctact
gatttggcaaatgcctttttctccattcctgtccacaaggcccacgagaggcaattcgcc
ttcagcttgcaaggccggcaatatactttcactatcttacctcaggggtatatcaactct
cacaaagctgtgacccgaaagactgccagttttgagtggagtccaaaacaggacaaggct
ctgcaacaggtccaggctgttgtgcaagctgctctgccatttggaccatatgacccagca
gatccaatggtgcttgaggtgtcagtggcagatagggttgctgtttggtgcctttggcag
gccccccaacccctgtcatcgcccaatgggcccatgaacaaagtggccatggtggcaggg
atgaaggttactaatgggctcagcaacatggacttccactcaccaaggctgacctggcta
cggccacgactgagtgcccaattttccagcagcagagaccaacactga

>gi568815597f:28638257_28843987|GENSCAN_predicted_peptide_3|549_aa
MLRRLPALAARRPPARRRRLFIDGHFYNRIYEAGSENNTAVVAVETHTIHKIEEGIDTGT
IEANEDMEIAYPITCGESKAILLWKKFVCPGINVKCVKFNDQLISPKHFVHLAGKSTLKD
WKRAIRLGGIMLRKMMDSGQIDFYQHDKVCSNTCRSTKFDLLISSARAPVPGQQTSVVQT
PTSADGSITQIAISEESMEEAGLEWNSALTAAVTMATEEGVKKDSEEISEDTLMFWKGIA
DVGLMEEVVCNIQKEIEELLRGVQQRLIQAPFQVTDAAVLNNVAHTFGLMDTVKKVLDNR
RNQVEQGEEQFLYTLTDLERQLEEQKKQGQDHRLKSQTVQNVVLMPVSTPKPPKRPRLQR
PASTTVLSPSPPVQQPQFTVISPITITPVGQSFSMGNIPVATLSQGSSPVTVHTLPSGPQ
LFRYATVVSSAKSSSPDTVTIHPSSSLALLSSTAMQDGSTLGNMTTMVSPVELVAMESGL
TSAIQAVESTSEDGQTIIEIDPAPDPEAEDTEGKAVILETELRTEEKVVAEMEEHQHQVH
NVEIVVLED

>gi568815597f:28638257_28843987|GENSCAN_predicted_CDS_3|1650_bp
atgctccgtcgcctgcccgccctggccgctcgccgcccgcccgcccgacggagacgtttg
tttatcgatggacacttttacaacaggatttatgaagctgggtcggagaacaacacggca
gttgtagcagtagaaactcacacgatacacaaaattgaagaagggattgatacaggcact
atagaagcaaatgaggatatggaaattgcttaccccataacttgtggggagagcaaagcc
atcctcctctggaagaagtttgtatgtccaggaataaacgtgaagtgtgtcaagttcaat
gatcagttgatcagccccaagcactttgttcatctggctggcaagtccactctgaaggac
tggaagagagctattcgtctgggtgggatcatgctcaggaaaatgatggactccggacag
attgatttttaccaacatgacaaagtttgctccaatacctgcagaagcaccaaatttgat
cttctgatcagcagtgcaagagctccagtgccaggacagcagacaagtgtggtgcagaca
cccacttcggctgatggtagcatcacgcagattgccatctcagaagagagcatggaagag
gcagggctggaatggaactcagctctcaccgctgctgtcaccatggccacggaggagggt
gtaaagaaagactcagaggaaatttcagaggacactttgatgttctggaaaggaatagct
gatgtagggctgatggaagaggttgtctgcaatatacagaaggaaatagaggagctactc
aggggagttcagcagcggctcatccaggctcccttccaagtcacagatgctgctgttctc
aacaatgtagcacacacatttggcctaatggacacagtcaagaaggttttagacaacaga
aggaaccaagtagagcagggagaagaacagtttctctatactctgacagacttggaacgc
cagttggaggagcagaagaagcaaggccaggatcacaggctgaaatctcagacagttcaa
aatgtggtactgatgcctgtgagcactcctaagcctccaaaaaggccccggctccagcgg
ccagcctccaccactgtcttgagcccttctcctcctgtccagcagcctcagttcacagtc
atctcacccatcaccatcaccccagtgggtcagtcattttccatgggcaatattccagtg
gccaccctcagccagggctccagtcctgtgactgtccacacactgccttctggccctcag
ctcttccgctatgccacagtggtctcctctgccaagagcagctcaccagacacagtgacc
atccacccttcatctagcttggcgctgctgagctctactgccatgcaggatgggagtaca
ctgggcaacatgaccaccatggttagccctgtggaattggtggccatggagtccggccta
acctcggcaattcaggctgttgaaagcacctcagaggatgggcagaccatcattgagatt
gatccagccccggacccagaagctgaagatactgagggcaaagcagtcatcttggagaca
gagctgaggactgaggagaaagttgtggctgagatggaagaacaccagcatcaagttcac
aatgtggagattgtggtcttagaggattaa

>gi568815597f:28638257_28843987|GENSCAN_predicted_peptide_4|577_aa
MSASSLLEQRPKGQGNKVQNGSVHQKDGLNDDDFEPYLSPQARPNNAYTAMSDSYLPSYY
SPSIGFSYSLGEAAWSTGGDTAMPYLTSYGQLSNGEPHFLPDAMFGQPGALGSTPFLGQH
GFNFFPSGIDFSAWGNNSSQGQSTQSSGYSSNYAYAPSSLGGAMIDGQSAFANETLNKAP
GMNTIDQGMAALKLGSTEVASNVPKVVGSAVGSGSITSNIVASNSLPPATIAPPKPASWA
DIASKPAKQQPKLKTKNGIAGSSLPPPPIKHNMDIGTWDNKGPVAKAPSQALVQNIGQPT
QGSPQPVGQQANNSPPVAQASVGQQTQPLPPPPPQPAQLSVQQQAAQPTRWVAPRNRGSG
FGHNGVDGNGVGQSQAGSGSTPSEPHPVLEKLRSINNYNPKDFDWNLKHGRVFIIKSYSE
DDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKGPVYLLFSVNGSGHFCGVAEMKSAVDYN
TCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQV
LKIIASYKHTTSIFDDFSHYEKRQEEEESVKKPFNYK

>gi568815597f:28638257_28843987|GENSCAN_predicted_CDS_4|1734_bp
atgtcggccagcagcctcttggagcagagaccaaaaggtcaaggaaacaaagtacaaaat
ggatctgtacatcaaaaggatggattaaacgatgatgattttgaaccttacttgagtcca
caggcaaggcccaataatgcatatactgccatgtcagattcctacttacccagttactac
agtccctccattggcttctcctattctttgggtgaagctgcttggtctacggggggtgac
acagccatgccctacttaacttcttatggacagctgagcaacggagagccccacttccta
ccagatgcaatgtttgggcaaccaggagccctaggtagcactccatttcttggtcagcat
ggttttaatttctttcccagtgggattgacttctcagcatggggaaataacagttctcag
ggacagtctactcagagctctggatatagtagcaattatgcttatgcacctagctcctta
ggtggagccatgattgatggacagtcagcttttgccaatgagaccctcaataaggctcct
ggcatgaatactatagaccaagggatggcagcactgaagttgggtagcacagaagttgca
agcaatgttccaaaagttgtaggttctgctgttggtagcgggtccattactagtaacatc
gtggcttccaatagtttgcctccagccaccattgctcctccaaaaccagcatcttgggct
gatattgctagcaagcctgcaaaacagcaacctaaactgaagaccaagaatggcattgca
gggtcaagtcttccgccacccccgataaagcataacatggatattggaacttgggataac
aagggtcccgttgcaaaagccccctcacaggctttggttcagaatataggtcagccaacc
caggggtctcctcagcctgtaggtcagcaggctaacaatagcccaccagtggctcaggca
tcagtagggcaacagacacagccattgcctccacctccaccacagcctgcccagctttca
gtccagcaacaggcagctcagccaacccgctgggtagcacctcggaaccgtggcagtggg
ttcggtcataatggggtggatggtaatggagtaggacagtctcaggctggttctggatct
actccttcagaaccccacccagtgttggagaagcttcggtccattaataactataacccc
aaagattttgactggaatctgaaacatggccgggttttcatcattaagagctactctgag
gacgatattcaccgttccattaagtataatatttggtgcagcacagagcatggtaacaag
agactggatgctgcttatcgttccatgaacgggaaaggccccgtttacttacttttcagt
gtcaacggcagtggacacttctgtggcgtggcagaaatgaaatctgctgtggactacaac
acatgtgcaggtgtgtggtcccaggacaaatggaagggtcgttttgatgtcaggtggatt
tttgtgaaggacgttcccaatagccaactgcgacacattcgcctagagaacaacgagaat
aaaccagtgaccaactctagggacactcaggaagtgcctctggaaaaggctaagcaggtg
ttgaaaattatagccagctacaagcacaccacttccatttttgatgacttctcacactat
gagaaacgccaagaggaagaagaaagtgttaaaaagccctttaactacaagtaa

>gi568815597f:28638257_28843987|GENSCAN_predicted_peptide_5|47_aa
MVSALASAPVRKRPALTCAGSLSWWMSASSNSLLKPEACASHSRLES

>gi568815597f:28638257_28843987|GENSCAN_predicted_CDS_5|144_bp
atggtgtccgcccttgcttctgcgcctgtgcggaagcgcccggccctcacctgcgcaggg
tccctgtcatggtggatgtctgcatcatccaactcgttgcttaagccagaggcctgtgcg
agtcactctcgactcgagtcctga

>gi568815597f:28638257_28843987|GENSCAN_predicted_peptide_6|113_aa
MEPAPSAGAELQPPLFANASDAYPSACPSAGANASGPPGARSASSLALAIAITALYSAVC
AVGLLGNVLVMFGIVRGTWGPARGEATYIEGNTGMCVIVCIRIIISTRILQIK

>gi568815597f:28638257_28843987|GENSCAN_predicted_CDS_6|342_bp
atggaaccggccccctccgccggcgccgagctgcagcccccgctcttcgccaacgcctcg
gacgcctaccctagcgcctgccccagcgctggcgccaatgcgtcggggccgccaggcgcg
cggagcgcctcgtccctcgccctggcaatcgccatcaccgcgctctactcggccgtgtgc
gccgtggggctgctgggcaacgtgcttgtcatgttcggcatcgtccggggcacctggggc
ccagcgagaggcgaggccacttacatcgaggggaacacaggaatgtgtgtcatcgtgtgc
attagaatcatcatcagtacccgcatcctgcagataaaatga

>gi568815597f:28638257_28843987|GENSCAN_predicted_peptide_7|146_aa
MDDFEGFEASVEEVTADVVEIARELELEVGPEDVTELLLLQSHEKTLMDEKLLLIDEQEK
IATATPTFGNHYPQPAAINIETVSSMRARTVSSSLLHPKYLELCLVLQGGQPNDVEFFYH
PHFTDEKTDSTLSSTVDSQQEAGFEP

>gi568815597f:28638257_28843987|GENSCAN_predicted_CDS_7|441_bp
atggatgactttgaggggttcgaggcttcagtggaggaagtaactgcagatgtagtagaa
atagcaagagaactagaattagaagtggggcctgaagatgtgactgaattgctgctgctg
caatctcatgaaaaaactttaatggatgagaagttgcttcttatagatgagcaagaaaaa
attgccacagccaccccaaccttcggcaaccactacccccaaccagcagccatcaatatt
gagactgtcagctccatgagggcaaggactgtgtcttcatcactgttgcatcccaagtac
ctagaactgtgcctggtacttcaggggggacaacccaatgatgtagagtttttctatcat
ccccatttcacagatgagaaaacagacagcacgctgagttcaacagtggacagccagcaa
gaagctggatttgaaccctag

>gi568815597f:28638257_28843987|GENSCAN_predicted_peptide_8|54_aa
MGMGPPSCRKTSSGAPLILPYGVAGPGMGQQAQWGPKNADSHKDVAYQTLDLWK

>gi568815597f:28638257_28843987|GENSCAN_predicted_CDS_8|165_bp
atggggatgggaccacctagttgcaggaaaacaagctcaggagccccactgattctacct
tacggggtggctggaccagggatggggcagcaggcacaatgggggcccaagaacgcagac
tcccacaaggatgtggcatatcagaccctggacctctggaaatag