Result of FASTA (ccds) for pF1KB0980
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB0980, 450 aa
  1>>>pF1KB0980 450 - 450 aa - 450 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.1217+/-0.000854; mu= 4.9983+/- 0.052
 mean_var=153.9259+/-31.643, 0's: 0 Z-trim(112.3): 48  B-trim: 7 in 1/50
 Lambda= 0.103376
 statistics sampled from 13048 (13091) to 13048 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.747), E-opt: 0.2 (0.402), width:  16
 Scan time:  2.560

The best scores are:                                      opt bits E(32554)
CCDS46398.1 PAX8 gene_id:7849|Hs108|chr2           ( 450) 3045 465.8 4.1e-131
CCDS46399.1 PAX8 gene_id:7849|Hs108|chr2           ( 398) 2050 317.3 1.7e-86
CCDS42736.1 PAX8 gene_id:7849|Hs108|chr2           ( 321) 1780 277.0 1.9e-74
CCDS42735.1 PAX8 gene_id:7849|Hs108|chr2           ( 287) 1777 276.5 2.4e-74
CCDS41561.1 PAX2 gene_id:5076|Hs108|chr10          ( 394) 1287 203.5 3.1e-52
CCDS7499.1 PAX2 gene_id:5076|Hs108|chr10           ( 396) 1277 202.1 8.7e-52
CCDS65047.1 PAX5 gene_id:5079|Hs108|chr9           ( 357) 1151 183.2 3.6e-46
CCDS65046.1 PAX5 gene_id:5079|Hs108|chr9           ( 328) 1141 181.7 9.5e-46
CCDS65048.1 PAX5 gene_id:5079|Hs108|chr9           ( 362) 1141 181.7   1e-45
CCDS6607.1 PAX5 gene_id:5079|Hs108|chr9            ( 391) 1138 181.3 1.5e-45
CCDS65045.1 PAX5 gene_id:5079|Hs108|chr9           ( 324) 1108 176.8 2.8e-44
CCDS65044.1 PAX5 gene_id:5079|Hs108|chr9           ( 295) 1081 172.8 4.3e-43
CCDS65042.1 PAX5 gene_id:5079|Hs108|chr9           ( 319)  876 142.2 7.3e-34
CCDS65043.1 PAX5 gene_id:5079|Hs108|chr9           ( 348)  876 142.2 7.9e-34
CCDS31451.1 PAX6 gene_id:5080|Hs108|chr11          ( 422)  791 129.6 6.1e-30
CCDS46522.1 PAX3 gene_id:5077|Hs108|chr2           ( 483)  680 113.1 6.5e-25
CCDS74709.1 PAX1 gene_id:5075|Hs108|chr20          ( 457)  668 111.3 2.2e-24
CCDS42826.1 PAX3 gene_id:5077|Hs108|chr2           ( 479)  668 111.3 2.2e-24
CCDS42825.1 PAX3 gene_id:5077|Hs108|chr2           ( 484)  668 111.3 2.3e-24
CCDS9662.1 PAX9 gene_id:5083|Hs108|chr14           ( 341)  665 110.7 2.3e-24
CCDS2448.1 PAX3 gene_id:5077|Hs108|chr2            ( 505)  668 111.3 2.3e-24
CCDS13146.2 PAX1 gene_id:5075|Hs108|chr20          ( 534)  668 111.3 2.5e-24
CCDS2450.1 PAX3 gene_id:5077|Hs108|chr2            ( 403)  642 107.4 2.9e-23
CCDS2449.1 PAX3 gene_id:5077|Hs108|chr2            ( 407)  642 107.4 2.9e-23
CCDS2451.1 PAX3 gene_id:5077|Hs108|chr2            ( 206)  636 106.3   3e-23
CCDS46523.1 PAX3 gene_id:5077|Hs108|chr2           ( 215)  636 106.3 3.1e-23
CCDS44075.1 PAX7 gene_id:5081|Hs108|chr1           ( 518)  635 106.4 7.3e-23
CCDS44074.1 PAX7 gene_id:5081|Hs108|chr1           ( 505)  627 105.2 1.6e-22
CCDS186.1 PAX7 gene_id:5081|Hs108|chr1             ( 520)  627 105.2 1.7e-22
CCDS5797.1 PAX4 gene_id:5078|Hs108|chr7            ( 343)  558 94.8 1.5e-19
CCDS31452.1 PAX6 gene_id:5080|Hs108|chr11          ( 436)  558 94.8 1.8e-19
CCDS65039.1 PAX5 gene_id:5079|Hs108|chr9           ( 220)  529 90.4   2e-18
CCDS65040.1 PAX5 gene_id:5079|Hs108|chr9           ( 283)  415 73.4 3.3e-13
CCDS65041.1 PAX5 gene_id:5079|Hs108|chr9           ( 291)  391 69.8   4e-12


>>CCDS46398.1 PAX8 gene_id:7849|Hs108|chr2                (450 aa)
 initn: 3045 init1: 3045 opt: 3045  Z-score: 2467.4  bits: 465.8 E(32554): 4.1e-131
Smith-Waterman score: 3045; 100.0% identity (100.0% similar) in 450 aa overlap (1-450:1-450)

               10        20        30        40        50        60
pF1KB0 MPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 ILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDND
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 ILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDND
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 TVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 TVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB0 SINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECPF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 SINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECPF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB0 ERQHYPEAYASPSHTKGEQGLYPLPLLNSTLDDGKATLTPSNTPLGRNLSTHQTYPVVAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 ERQHYPEAYASPSHTKGEQGLYPLPLLNSTLDDGKATLTPSNTPLGRNLSTHQTYPVVAD
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB0 PHSPFAIKQETPEVSSSSSTPSSLSSSAFLDLQQVGSGVPPFNAFPHAASVYGQFTGQAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 PHSPFAIKQETPEVSSSSSTPSSLSSSAFLDLQQVGSGVPPFNAFPHAASVYGQFTGQAL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB0 LSGREMVGPTLPGYPPHIPTSGQGSYASSAIAGMVAGSEYSGNAYGHTPYSSYSEAWRFP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 LSGREMVGPTLPGYPPHIPTSGQGSYASSAIAGMVAGSEYSGNAYGHTPYSSYSEAWRFP
              370       380       390       400       410       420

              430       440       450
pF1KB0 NSSLLSSPYYYSSTSRPSAPPTTATAFDHL
       ::::::::::::::::::::::::::::::
CCDS46 NSSLLSSPYYYSSTSRPSAPPTTATAFDHL
              430       440       450

>>CCDS46399.1 PAX8 gene_id:7849|Hs108|chr2                (398 aa)
 initn: 2091 init1: 2040 opt: 2050  Z-score: 1666.2  bits: 317.3 E(32554): 1.7e-86
Smith-Waterman score: 2052; 82.6% identity (86.5% similar) in 385 aa overlap (1-385:1-359)

               10        20        30        40        50        60
pF1KB0 MPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 ILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDND
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 ILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDND
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 TVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 TVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB0 SINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECPF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 SINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECPF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB0 ERQHYPEAYASPSHTKGEQGLYPLPLLNSTLDDGKATLTPSNTPLGRNLSTHQTYPVVAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: 
CCDS46 ERQHYPEAYASPSHTKGEQGLYPLPLLNSTLDDGKATLTPSNTPLGRNLSTHQTYPVVAA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB0 PHSPFAIKQETPEVSSSSSTPSSLSSSAFLDLQQVGSGVPPFNAFPHAASVYGQFTGQAL
       :  :: :         :.:.:.:  :              ::  .:  .   :.  ..  
CCDS46 P--PFWI--------CSKSAPGSRPSM-------------PFPMLPPCT---GSSRARPS
                        310                    320          330    

              370       380       390       400       410       420
pF1KB0 LSGREMVGPTLPGYPPHIPTSGQGSYASSAIAGMVAGSEYSGNAYGHTPYSSYSEAWRFP
        .:..  ::  :   :  : . ...                                   
CCDS46 SQGERWWGPRCPDTHPTSPPADRAAMPPLPSQAWWQEVNTLAMPMATPPTPPTARPGASP
          340       350       360       370       380       390    

>>CCDS42736.1 PAX8 gene_id:7849|Hs108|chr2                (321 aa)
 initn: 1829 init1: 1778 opt: 1780  Z-score: 1450.0  bits: 277.0 E(32554): 1.9e-74
Smith-Waterman score: 1780; 85.2% identity (89.6% similar) in 317 aa overlap (1-312:1-317)

               10        20        30        40        50        60
pF1KB0 MPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 ILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDND
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 ILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDND
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 TVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 TVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB0 SINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECPF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 SINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECPF
              190       200       210       220       230       240

              250       260           270        280       290     
pF1KB0 ERQHYPEAYASPSHTKGEQGLY---P-LPLLNSTLDDG-KATLTPSNTPLGRNLSTHQTY
       ::::::::::::::::::::     :  :  . :   . .:.. :  .    .  .  ..
CCDS42 ERQHYPEAYASPSHTKGEQGERWWGPRCPDTHPTSPPADRAAMPPLPSQAWWQEVNTLAM
              250       260       270       280       290       300

         300       310       320       330       340       350     
pF1KB0 PVVADPHSPFAIKQETPEVSSSSSTPSSLSSSAFLDLQQVGSGVPPFNAFPHAASVYGQF
       :... :  : :    .:                                           
CCDS42 PMATPPTPPTARPGASPTPAC                                       
              310       320                                        

>>CCDS42735.1 PAX8 gene_id:7849|Hs108|chr2                (287 aa)
 initn: 1796 init1: 1770 opt: 1777  Z-score: 1448.3  bits: 276.5 E(32554): 2.4e-74
Smith-Waterman score: 1777; 93.0% identity (94.7% similar) in 284 aa overlap (1-284:1-283)

               10        20        30        40        50        60
pF1KB0 MPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 ILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDND
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 ILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDND
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 TVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 TVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB0 SINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECPF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 SINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECPF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB0 ERQHYPEAYASPSHTKGEQGLYPLPLLNSTLDDGKATLTPSNTPLGRNLSTHQTYPVVAD
       ::::::::::::::::::: .  : .  .:      :  :. .:                
CCDS42 ERQHYPEAYASPSHTKGEQEVNTLAMPMAT-PPTPPTARPGASPTPAC            
              250       260       270        280                   

              310       320       330       340       350       360
pF1KB0 PHSPFAIKQETPEVSSSSSTPSSLSSSAFLDLQQVGSGVPPFNAFPHAASVYGQFTGQAL

>>CCDS41561.1 PAX2 gene_id:5076|Hs108|chr10               (394 aa)
 initn: 1509 init1: 870 opt: 1287  Z-score: 1051.3  bits: 203.5 E(32554): 3.1e-52
Smith-Waterman score: 1543; 55.5% identity (72.8% similar) in 449 aa overlap (2-448:9-392)

                      10        20        30        40        50   
pF1KB0        MPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRV
               : .... ::::.:::::.::::::::.:::::::.:::::::::::::::::
CCDS41 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
               10        20        30        40        50        60

            60        70        80        90       100       110   
pF1KB0 SHGCVSKILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLA
       ::::::::::::::::::.:::::::::::::::::.::..:::::::::::::::::::
CCDS41 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA
               70        80        90       100       110       120

           120       130       140       150       160       170   
pF1KB0 EGVCDNDTVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQS
       ::.::::::::::::::::::::::::. :  . ..:   .::::..::.:  :  : ..
CCDS41 EGICDNDTVPSVSSINRIIRTKVQQPFH-PTPDGAGTGVTAPGHTIVPSTASPPVSSASN
              130       140        150       160       170         

           180       190       200       210       220       230   
pF1KB0 DSLGSTYSINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHL
       : .:: :::::.::: . ...::: :.. ...   . ::::. .. :::::.:.:.:..:
CCDS41 DPVGS-YSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSGVDSLRKHLRADTFTQQQL
     180        190       200       210       220       230        

           240       250       260        270       280        290 
pF1KB0 EPLECPFERQHYPEAYASPSHTKGEQG-LYPLPLLNSTLDDGKATLTPSNTP-LGRNLST
       : :.  :::  ::... .  : :.:::  : :: :.  ::. :..:. :..: :: :.: 
CCDS41 EALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASTNPELGSNVSG
      240       250       260       270       280       290        

             300       310       320       330       340       350 
pF1KB0 HQTYPVVADPHSPFAIKQETPEVSSSSSTPSSLSSSAFLDLQQVGSGVPPFNAFPHAASV
        ::::::                                                     
CCDS41 TQTYPVV-----------------------------------------------------
      300                                                          

             360       370       380       390       400       410 
pF1KB0 YGQFTGQALLSGREMVGPTLPGYPPHIPTSGQGSYASSAIAGMVAGSEYSGNAYGHTPYS
                 .::.:.. ::::::::.: .::::: .:..:::: :::.::: :.:  :.
CCDS41 ----------TGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYT
                   310       320       330       340       350     

             420       430       440       450
pF1KB0 SYSEAWRFPNSSLLSSPYYYSSTSRPSAPPTTATAFDHL
       .:.::::: : .:::::::::.. : ::: ..:.:.:  
CCDS41 AYNEAWRFSNPALLSSPYYYSAAPRGSAPAAAAAAYDRH
         360       370       380       390    

>>CCDS7499.1 PAX2 gene_id:5076|Hs108|chr10                (396 aa)
 initn: 1308 init1: 870 opt: 1277  Z-score: 1043.2  bits: 202.1 E(32554): 8.7e-52
Smith-Waterman score: 1330; 51.2% identity (69.0% similar) in 445 aa overlap (2-443:9-386)

                      10        20        30        40        50   
pF1KB0        MPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRV
               : .... ::::.:::::.::::::::.:::::::.:::::::::::::::::
CCDS74 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
               10        20        30        40        50        60

            60        70        80        90       100       110   
pF1KB0 SHGCVSKILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLA
       ::::::::::::::::::.:::::::::::::::::.::..:::::::::::::::::::
CCDS74 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA
               70        80        90       100       110       120

           120       130       140       150       160       170   
pF1KB0 EGVCDNDTVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQS
       ::.::::::::::::::::::::::::. :  . ..:   .::::..::.:  :  : ..
CCDS74 EGICDNDTVPSVSSINRIIRTKVQQPFH-PTPDGAGTGVTAPGHTIVPSTASPPVSSASN
              130       140        150       160       170         

           180       190       200       210       220       230   
pF1KB0 DSLGSTYSINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHL
       : .:: :::::.::: . ...::: :.. ...   . ::::. .. :::::.:.:.:..:
CCDS74 DPVGS-YSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSGVDSLRKHLRADTFTQQQL
     180        190       200       210       220       230        

           240       250       260        270       280        290 
pF1KB0 EPLECPFERQHYPEAYASPSHTKGEQG-LYPLPLLNSTLDDGKATLTPSNTP-LGRNLST
       : :.  :::  ::... .  : :.:::  : :: :.  ::. :..:. :..: :: :.: 
CCDS74 EALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASTNPELGSNVSG
      240       250       260       270       280       290        

             300       310       320       330       340       350 
pF1KB0 HQTYPVVADPHSPFAIKQETPEVSSSSSTPSSLSSSAFLDLQQVGSGVPPFNAFPHAASV
        ::::::                                                     
CCDS74 TQTYPVV-----------------------------------------------------
      300                                                          

             360       370       380       390       400        410
pF1KB0 YGQFTGQALLSGREMVGPTLPGYPPHIPTSGQGSYASSAIAGMVAGSEYS-GNAYGHTPY
                 .::.:.. ::::::::.: .::::: .:..::::  .  . ...    : 
CCDS74 ----------TGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPEAAVGPSSSLMSKPG
                   310       320       330       340       350     

              420       430       440       450   
pF1KB0 SSYSEAWRFPNSSLLSSPYYYSSTSRPSAPPTTATAFDHL   
        . .:.    . .  :::   . :. ::. :::          
CCDS74 RKLAEVPPCVQPTGASSPA--TRTATPSTRPTTRLGDSATPPY
         360       370         380       390      

>>CCDS65047.1 PAX5 gene_id:5079|Hs108|chr9                (357 aa)
 initn: 1216 init1: 864 opt: 1151  Z-score: 942.3  bits: 183.2 E(32554): 3.6e-46
Smith-Waterman score: 1191; 49.4% identity (64.5% similar) in 451 aa overlap (2-448:10-355)

                       10        20        30        40        50  
pF1KB0         MPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLR
                :..: :.::::.:::::.::::::::.:::::::.::::::::::::::::
CCDS65 MDLEKNYPTPRTS-RTGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLR
               10         20        30        40        50         

             60        70        80        90       100       110  
pF1KB0 VSHGCVSKILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLL
       :::::::::::::::::::.::::::::::::::::::::..::::::::::::::::::
CCDS65 VSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLL
      60        70        80        90       100       110         

            120       130       140       150       160       170  
pF1KB0 AEGVCDNDTVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQ
       :: :::::::::::::::::::::::: : :. .         .:... ...::   : .
CCDS65 AERVCDNDTVPSVSSINRIIRTKVQQPPNQPVPA--------SSHSIVSTGSVTQVSSVS
     120       130       140       150               160       170 

            180       190         200       210       220       230
pF1KB0 SDSLGSTYSINGLLGIAQPGSD--KRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQ
       .:: ::.:::.:.:::..:..:  ::: :.. :.:   .  :  . .  ::..: : :.:
CCDS65 TDSAGSSYSISGILGITSPSADTNKRKRDEGIQESPVPNGHSLPGRDFLRKQMRGDLFTQ
             180       190       200       210       220       230 

              240       250       260         270       280        
pF1KB0 HHLEPLECPFERQHYPEAYASPSHTKGEQGLY--PLPLLNSTLDDGKATLTPSNTPLGRN
       ..:: :.  :::::: . ...    : ::      .  : . ::: ::.:. : ::    
CCDS65 QQLEVLDRVFERQHYSDIFTTTEPIKPEQTTEYSAMASLAGGLDDMKANLA-SPTP----
             240       250       260       270       280           

      290       300       310       320       330       340        
pF1KB0 LSTHQTYPVVADPHSPFAIKQETPEVSSSSSTPSSLSSSAFLDLQQVGSGVPPFNAFPHA
                 ::                                  .::.::        
CCDS65 ----------AD----------------------------------IGSSVP--------
                                                    290            

      350       360       370       380       390       400        
pF1KB0 ASVYGQFTGQALLSGREMVGPTLPGYPPHIPTSGQGSYASSAIAGMVAGSEYSGNAYGHT
                          ::   .::                  .:.:::.::. :.: 
CCDS65 -------------------GPQ--SYP------------------IVTGSEFSGSPYSHP
                               300                         310     

      410       420       430       440       450
pF1KB0 PYSSYSEAWRFPNSSLLSSPYYYSSTSRPSAPPTTATAFDHL
        ::::...::::: .::.::::::...: .:::..:::.:  
CCDS65 QYSSYNDSWRFPNPGLLGSPYYYSAAARGAAPPAAATAYDRH
         320       330       340       350       

>>CCDS65046.1 PAX5 gene_id:5079|Hs108|chr9                (328 aa)
 initn: 1069 init1: 855 opt: 1141  Z-score: 934.8  bits: 181.7 E(32554): 9.5e-46
Smith-Waterman score: 1141; 59.9% identity (78.3% similar) in 309 aa overlap (2-305:10-307)

                       10        20        30        40        50  
pF1KB0         MPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLR
                :..: :.::::.:::::.::::::::.:::::::.::::::::::::::::
CCDS65 MDLEKNYPTPRTS-RTGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLR
               10         20        30        40        50         

             60        70        80        90       100       110  
pF1KB0 VSHGCVSKILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLL
       :::::::::::::::::::.::::::::::::::::::::..::::::::::::::::::
CCDS65 VSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLL
      60        70        80        90       100       110         

            120       130       140       150       160       170  
pF1KB0 AEGVCDNDTVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQ
       :: :::::::::::::::::::::::: : :.         . .:... ...::   : .
CCDS65 AERVCDNDTVPSVSSINRIIRTKVQQPPNQPVP--------ASSHSIVSTGSVTQVSSVS
     120       130       140       150               160       170 

            180       190         200       210       220       230
pF1KB0 SDSLGSTYSINGLLGIAQPGSD--KRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQ
       .:: ::.:::.:.:::..:..:  ::: :.. :.:   .  :  . .  ::..: : :.:
CCDS65 TDSAGSSYSISGILGITSPSADTNKRKRDEGIQESPVPNGHSLPGRDFLRKQMRGDLFTQ
             180       190       200       210       220       230 

              240       250       260         270        280       
pF1KB0 HHLEPLECPFERQHYPEAYASPSHTKGEQGLY--PLPLLNSTLDDGKATL-TPSNTPLGR
       ..:: :.  :::::: . ...    : ::      .  : . ::: ::.: .:. . .: 
CCDS65 QQLEVLDRVFERQHYSDIFTTTEPIKPEQTTEYSAMASLAGGLDDMKANLASPTPADIGS
             240       250       260       270       280       290 

       290       300       310       320       330       340       
pF1KB0 NLSTHQTYPVVADPHSPFAIKQETPEVSSSSSTPSSLSSSAFLDLQQVGSGVPPFNAFPH
       ..   :.::.:.   ::.                                          
CCDS65 SVPGPQSYPIVTG--SPYYYSAAARGAAPPAAATAYDRH                     
             300         310       320                             

>>CCDS65048.1 PAX5 gene_id:5079|Hs108|chr9                (362 aa)
 initn: 1241 init1: 864 opt: 1141  Z-score: 934.2  bits: 181.7 E(32554): 1e-45
Smith-Waterman score: 1210; 49.0% identity (65.4% similar) in 451 aa overlap (2-448:10-360)

                       10        20        30        40        50  
pF1KB0         MPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLR
                :..: :.::::.:::::.::::::::.:::::::.::::::::::::::::
CCDS65 MDLEKNYPTPRTS-RTGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLR
               10         20        30        40        50         

             60        70        80        90       100       110  
pF1KB0 VSHGCVSKILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLL
       :::::::::::::::::::.::::::::::::::::::::..::::::::::::::::::
CCDS65 VSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLL
      60        70        80        90       100       110         

            120       130       140       150       160       170  
pF1KB0 AEGVCDNDTVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQ
       :: :::::::::::::::::::::::: : :. .         .:... ...::   : .
CCDS65 AERVCDNDTVPSVSSINRIIRTKVQQPPNQPVPA--------SSHSIVSTGSVTQVSSVS
     120       130       140       150               160       170 

            180       190         200       210       220       230
pF1KB0 SDSLGSTYSINGLLGIAQPGSD--KRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQ
       .:: ::.:::.:.:::..:..:  ::: :.. :.:   .  :  . .  ::..: : :.:
CCDS65 TDSAGSSYSISGILGITSPSADTNKRKRDEGIQESPVPNGHSLPGRDFLRKQMRGDLFTQ
             180       190       200       210       220       230 

              240       250       260         270       280        
pF1KB0 HHLEPLECPFERQHYPEAYASPSHTKGEQGLY--PLPLLNSTLDDGKATLTPSNTPLGRN
       ..:: :.  :::::: . ...    : ::      .  : . ::: ::.:. : ::    
CCDS65 QQLEVLDRVFERQHYSDIFTTTEPIKPEQTTEYSAMASLAGGLDDMKANLA-SPTP----
             240       250       260       270       280           

      290       300       310       320       330       340        
pF1KB0 LSTHQTYPVVADPHSPFAIKQETPEVSSSSSTPSSLSSSAFLDLQQVGSGVPPFNAFPHA
                 ::                                  .::.::  ...:  
CCDS65 ----------AD----------------------------------IGSSVPGPQSYP--
                                                    290       300  

      350       360       370       380       390       400        
pF1KB0 ASVYGQFTGQALLSGREMVGPTLPGYPPHIPTSGQGSYASSAIAGMVAGSEYSGNAYGHT
                  ...::.... ::::::::.: .:::::.. ...::: ::          
CCDS65 -----------IVTGRDLASTTLPGYPPHVPPAGQGSYSAPTLTGMVPGS----------
                         310       320       330                   

      410       420       430       440       450
pF1KB0 PYSSYSEAWRFPNSSLLSSPYYYSSTSRPSAPPTTATAFDHL
                          :::::...: .:::..:::.:  
CCDS65 -------------------PYYYSAAARGAAPPAAATAYDRH
                        340       350       360  

>>CCDS6607.1 PAX5 gene_id:5079|Hs108|chr9                 (391 aa)
 initn: 1373 init1: 864 opt: 1138  Z-score: 931.2  bits: 181.3 E(32554): 1.5e-45
Smith-Waterman score: 1408; 52.8% identity (71.0% similar) in 451 aa overlap (2-448:10-389)

                       10        20        30        40        50  
pF1KB0         MPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLR
                :..: :.::::.:::::.::::::::.:::::::.::::::::::::::::
CCDS66 MDLEKNYPTPRTS-RTGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLR
               10         20        30        40        50         

             60        70        80        90       100       110  
pF1KB0 VSHGCVSKILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLL
       :::::::::::::::::::.::::::::::::::::::::..::::::::::::::::::
CCDS66 VSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLL
      60        70        80        90       100       110         

            120       130       140       150       160       170  
pF1KB0 AEGVCDNDTVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQ
       :: :::::::::::::::::::::::: : :. .         .:... ...::   : .
CCDS66 AERVCDNDTVPSVSSINRIIRTKVQQPPNQPVPA--------SSHSIVSTGSVTQVSSVS
     120       130       140       150               160       170 

            180       190         200       210       220       230
pF1KB0 SDSLGSTYSINGLLGIAQPGSD--KRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQ
       .:: ::.:::.:.:::..:..:  ::: :.. :.:   .  :  . .  ::..: : :.:
CCDS66 TDSAGSSYSISGILGITSPSADTNKRKRDEGIQESPVPNGHSLPGRDFLRKQMRGDLFTQ
             180       190       200       210       220       230 

              240       250       260         270       280        
pF1KB0 HHLEPLECPFERQHYPEAYASPSHTKGEQGLY--PLPLLNSTLDDGKATLTPSNTPLGRN
       ..:: :.  :::::: . ...    : ::      .  : . ::: ::.:. : ::    
CCDS66 QQLEVLDRVFERQHYSDIFTTTEPIKPEQTTEYSAMASLAGGLDDMKANLA-SPTP----
             240       250       260       270       280           

      290       300       310       320       330       340        
pF1KB0 LSTHQTYPVVADPHSPFAIKQETPEVSSSSSTPSSLSSSAFLDLQQVGSGVPPFNAFPHA
                 ::                                  .::.::  ...:  
CCDS66 ----------AD----------------------------------IGSSVPGPQSYP--
                                                    290       300  

      350       360       370       380       390       400        
pF1KB0 ASVYGQFTGQALLSGREMVGPTLPGYPPHIPTSGQGSYASSAIAGMVAGSEYSGNAYGHT
                  ...::.... ::::::::.: .:::::.. ...::: :::.::. :.: 
CCDS66 -----------IVTGRDLASTTLPGYPPHVPPAGQGSYSAPTLTGMVPGSEFSGSPYSHP
                         310       320       330       340         

      410       420       430       440       450
pF1KB0 PYSSYSEAWRFPNSSLLSSPYYYSSTSRPSAPPTTATAFDHL
        ::::...::::: .::.::::::...: .:::..:::.:  
CCDS66 QYSSYNDSWRFPNPGLLGSPYYYSAAARGAAPPAAATAYDRH
     350       360       370       380       390 




450 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 17:39:54 2016 done: Sat Nov  5 17:39:54 2016
 Total Scan time:  2.560 Total Display time:  0.040

Function used was FASTA [36.3.4 Apr, 2011]
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