GENSCAN 1.0	Date run:  6-Nov-116	Time: 02:17:42

Sequence gi568815592f:110775106_110993613 : 218508 bp : 42.81% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +  35386  35393    8  0  2   95  110    11 0.458   3.77
 1.02 Intr +  39443  39710  268  2  1   69   85   231 0.512  17.51
 1.03 Intr +  40050  40320  271  2  1   91   56    75 0.485   0.79
 1.04 Intr +  40536  40745  210  1  0   75   81   147 0.748  10.66
 1.05 Intr +  48156  48322  167  1  2   31   -5   177 0.006   1.46
 1.06 Intr +  83122  83787  666  0  0   88   80   728 0.042  63.00
 1.07 Intr +  83867  83997  131  1  2   83   17   158 0.545   6.77
 1.08 Term +  95623  95719   97  1  1  112   39    75 0.562   1.46
 1.09 PlyA +  95789  95794    6                               1.05

 2.00 Prom +  97352  97391   40                              -6.25
 2.01 Init +  98900  98981   82  1  1   43   90    58 0.609   2.74
 2.02 Intr +  99372  99507  136  1  1   92   -3   129 0.116   2.91
 2.03 Intr +  99991 100254  264  1  0   41   91   331 0.117  24.40
 2.04 Intr + 113752 113878  127  1  1   83  108    13 0.479   2.56
 2.05 Intr + 115149 115251  103  2  1   39  108    63 0.548   2.23
 2.06 Intr + 117220 117338  119  2  2   32   60   164 0.654   7.26
 2.07 Intr + 117630 117722   93  2  0  117   76   131 0.999  14.04
 2.08 Intr + 117805 117960  156  0  0   82   91   124 0.999  11.39
 2.09 Term + 130038 130388  351  2  0   77   43   272 0.077  15.10
 2.10 PlyA + 130454 130459    6                               1.05

 3.00 Prom + 130491 130530   40                             -16.61
 3.01 Sngl + 130599 131234  636  2  0   45   43   336 0.685  20.73
 3.02 PlyA + 131462 131467    6                               1.05

 4.00 Prom + 131630 131669   40                              -6.15
 4.01 Sngl + 131723 132151  429  1  0   49   39   194 0.804   6.63
 4.02 PlyA + 132370 132375    6                               1.05

 5.00 Prom + 133086 133125   40                              -7.35
 5.01 Sngl + 133553 134215  663  1  0   60   42   199 0.277   8.42
 5.02 PlyA + 134479 134484    6                              -0.45

 6.00 Prom + 134851 134890   40                              -3.65
 6.01 Init + 142297 142610  314  0  2   72   74   390 0.814  32.84
 6.02 Intr + 142847 143030  184  2  1   34    9   117 0.085  -2.73
 6.03 Term + 146154 146558  405  2  0    3   28   258 0.065   5.50
 6.04 PlyA + 146738 146743    6                               1.05

 7.00 Prom + 147827 147866   40                              -6.35
 7.01 Sngl + 148461 148862  402  2  0   77   43   473 0.999  37.72
 7.02 PlyA + 151867 151872    6                               1.05

 8.00 Prom + 164463 164502   40                              -5.95
 8.01 Init + 183665 183724   60  1  0  115   60   121 0.005  13.30
 8.02 Intr + 184067 184147   81  1  0   74   97    27 0.009   1.12
 8.03 Intr + 185309 185372   64  1  1  113   97   115 0.020  12.27
 8.04 Intr + 185467 185511   45  2  0  103  115    50 0.019   6.66
 8.05 Intr + 187287 187400  114  1  0   92   78    65 0.975   5.40
 8.06 Term + 192405 192685  281  1  2   68   43   259 0.954  14.02
 8.07 PlyA + 195477 195482    6                               1.05

 9.02 PlyA - 197788 197783    6                               1.05
 9.01 Term - 207266 206871  396  2  0   14   44   311 0.087  13.39

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term +  99372  99595  224  1  2   92   47   211 0.876  13.50
S.002 Init + 100001 100254  254  1  2   63   91   303 0.813  24.96
S.003 Term + 118371 118511  141  2  0   82   38   124 0.953   3.75
S.004 Init + 127159 127313  155  0  2  100   51    78 0.805   4.81
S.005 Intr + 185309 185511  203  2  2  113  115   134 0.980  16.61
S.006 Init + 206855 206961  107  1  2   90    9   196 0.845  11.64
S.007 Intr + 209901 210033  133  0  1   62  103   124 0.864  11.03


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815592f:110775106_110993613|GENSCAN_predicted_peptide_1|605_aa
MARLPGEVSNRRPREALSRLEVPQRPSLPRAGAATPQRSSACPLRSPKRLDPTNSSSTAV
PTRVPPPSPSTRRAPLWDGTDASDRAAPREFERHGTRGPPPLSPSSSSPRDRRSTSPTAA
SRARARAARRPPLRGPPSARDSSAATAATSSTSSSSSSATAAAAPAGTPSPASLLHFLVL
EPGSARLPVPVKVESSKFQCAFCGSRGDTGKKCLTLVGRGYFTVTSPTQRVWKALNQHLA
EGLAAVTREARAANITLNGEELKAFPLRAGTRQECPLSLLLLNVVLEVLTRSIRQEKGMK
GIRIGKEKRAPAMSSTQFNKDPSYGLSAEIKNRLLCKYDPQKEVELRSWIEGLTSLSIGP
DFQKGLKDGISLWTLMNKLQPGSVLKINRSMQNWHQLENLSNFIKAMVSYGMNTVDLFDA
NDLFESGNMTQLQVSLLALVSKARTKGLQSGVDIGLKYSEKQEPNFDDATMKAGQCTIGL
QMGTNKCTSQSGMTAYSTRRHLYDPKNHILPPMDNLTISLQMGTNKCASQMGYTQGAKQS
GQVFGLGRQIHDPKFCPEGTVADRAPSGAQARGRLDCGQIKPASIMRIKTLLYGQNGLEG
TWFPE

>gi568815592f:110775106_110993613|GENSCAN_predicted_CDS_1|1818_bp
atggccaggctccccggcgaggtttcaaaccgccgcccccgcgaggcgctcagccgattg
gaagttccacaacgaccgtcactacccagggccggagcggcaactccgcagcggagctct
gcctgcccgctgcgttcccccaagagactagaccccacaaactcctcctccaccgcggtc
ccaactcgagtccccccgccgtctccgagcactcggagggcgcccctctgggacgggacc
gacgcctcggaccgggctgcgccgcgggagttcgagaggcacgggacgcgggggccgccg
ccgctcagtccctcctcctcctccccccgcgaccgccgctccacttctccaacagccgcc
tctcgcgcgcgcgcgcgcgccgcccgccgcccgccgctccgcggtccgccttcagcaagg
gactcctcggcggccacagcagccacctcctccacctcttcctcctcctcctccgcgacg
gcggcggcggctcccgcaggcacccccagtcccgcctccctccttcatttccttgttttg
gaacctggtagcgcacggctcccggttcctgtgaaggtagaaagctcgaagttccagtgt
gctttctgcggttctcggggagacactggaaagaagtgccttactctagtgggaagggga
tacttcactgtaactagccccacgcagagagtatggaaagcattaaatcagcaccttgct
gaagggttggctgcagtgactcgggaggcgagggctgccaacatcacactgaatggggaa
gagttgaaagcatttcccctgagagctggaacaagacaagaatgcccactttcacttctt
ctactcaacgtagtactggaagtactaaccagatccatcaggcaagagaaaggaatgaaa
ggcatccgaattggaaaagagaaacgcgcgccagccatgagctccacgcagttcaacaag
gacccctcgtacgggctgtcagccgagatcaagaaccggctcctgtgcaaatatgacccc
cagaaggaggtagagctccgcagctggatcgagggactcaccagcctctccatcggcccc
gacttccagaagggcctgaaggacgggattagtttatggacactcatgaacaagctacag
ccgggctcagtcctcaagatcaaccgttccatgcagaactggcaccaactagaaaacctc
tccaatttcatcaaggccatggtcagctacggcatgaacaccgtggacctgttcgatgcc
aacgacctgtttgagagtgggaacatgacgcagctgcaggtgtctcttctcgccctggtg
agtaaggccaggactaaggggctgcagagcggggtggacatcggccttaagtactcggag
aagcaggagccgaacttcgacgacgccaccatgaaggctggccagtgcaccatcgggctg
cagatgggcaccaacaaatgcaccagccagtcgggcatgaccgcgtacagcacaaggagg
catctctacgaccccaagaaccacatcctgccccccatggacaacttaaccatcagcctc
cagatgggtacaaacaagtgtgccagccagatgggctacacgcagggcgccaagcaaagc
ggccaggtctttggcctgggccggcagatacatgaccccaagttctgcccagaaggcaca
gtggccgacagggctccctcgggcgcgcaggctcgggggaggctagactgtggacagatt
aagccagcttcaataatgagaataaagactttactctatggtcaaaatgggttagaagga
acctggttccctgaatga

>gi568815592f:110775106_110993613|GENSCAN_predicted_peptide_2|476_aa
MEQRSCQCFPEAAVLSQFGGMASHTVGALHSLSSFRSRSPHPLCVRSEVSSPQLDITAPT
PTQEPARARAAAHLTVMEAAHFFEGTEKLLEVWFSRQQPDANQGSGDLRTIPRWVPGALA
DIRAWGLSPPPRHQPRVEPEFPQLSVGGKSAAWGRFGGLGSESSMFVSKRRFILKTCGTT
LLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHRNFQEEIEFLNAIFPKSR
VISQPDQTLEILMSELDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATMFNPCGY
SMNGMKSDGTYWTIHITPEPEFSYVSFETNLSQTSYDDLIRKVVEVFKPGKFVTTLFVNQ
PPLVIPRQTGSGVDLQQTPTDLQLRVLTVRRNTNKQDIYTKTLSARHHHQRPKVGKTLKM
GRNQSRKAENSKNQSTSSPPKERNSSPAMEQSWMENDFDELREEGFRRSVITTSPS

>gi568815592f:110775106_110993613|GENSCAN_predicted_CDS_2|1431_bp
atggagcaacggagctgccagtgcttcccggaggctgctgtgctcagccaattcggaggc
atggcgagccacacggtgggagctctgcacagcctttcctcattccgttcccgctctccc
cacccactctgcgttcgatccgaggtttctagtccccagctggacatcacagcaccaact
cccactcaggagccggccagagcccgagccgcagcgcatctcacggtgatggaagctgca
cattttttcgaagggaccgagaagctgctggaggtttggttctcccggcagcagcccgac
gcaaaccaaggatctggggatcttcgcactatcccaaggtgggtccccggggcgctcgct
gacatccgggcctgggggctgtcgccgccgccgaggcaccagccacgggtggagcccgag
ttccctcagctttcagttgggggcaagtctgcggcctggggtcgcttcggcggccttgga
agtgagagtagcatgtttgtctccaagagacgtttcattttgaagacatgtggtaccacc
ctcttgctgaaagcactggttcccctgttgaagcttgctagggattacagtgggtttgac
tcaattcaaagcttcttttattctcgtaagaatttcatgaagccttctcaccaagggtac
ccacaccggaatttccaggaagaaatagagtttcttaatgcaattttcccaaagagtcgg
gtaatcagtcagccagatcaaaccttggaaattctgatgagtgagcttgacccagcagtt
atggaccagttctacatgaaagatggtgttactgcaaaggatgtcactcgtgagagtgga
attcgtgacctgataccaggttctgtcattgatgccacaatgttcaatccttgtgggtat
tcgatgaatggaatgaaatcggatggaacttattggactattcacatcactccagaacca
gaattttcttatgttagctttgaaacaaacttaagtcagacctcctatgatgacctgatc
aggaaagttgtagaagtcttcaagccaggaaaatttgtgaccaccttgtttgttaatcag
cctccgctggtgatacccaggcaaacagggtctggagtggacctccagcaaactccaaca
gacttgcagctgagggtcctgactgttagaaggaacactaacaaacaggacatctacacc
aaaaccctatctgcacgtcaccatcatcaaagaccaaaggtaggtaaaaccctaaagatg
gggagaaaccagagcagaaaagctgaaaattctaaaaatcagagcacctcttctcctcca
aaggaacgcaactcctcaccagcaatggaacaaagctggatggagaatgactttgatgag
ctgagagaagaaggcttcagacgatcggtaataacaacttctccgagctaa

>gi568815592f:110775106_110993613|GENSCAN_predicted_peptide_3|211_aa
MKREEKLREKRVKRNEQSLQETWEYVKRPNLHLIGVPESDGENGTKSENTLQDIIQENFP
NLARQANIQIQEIQRMPQRYSSRRATPRHIIVKFTKVEMMEKMLRAARETGRVTHKGKPI
RLTADLLAETLQARREWGPIFNILKEKNFQPRISYPAKLSFISEGEIKSFTDKQMLRDFV
TTRPALQELLKEALNMERNNRYQPLQKHAKL

>gi568815592f:110775106_110993613|GENSCAN_predicted_CDS_3|636_bp
atgaagcgagaagagaagttaagagaaaaaagagtaaaaagaaacgaacaaagcctccaa
gaaacatgggagtatgtgaaaagaccaaatctacatctgattggtgtacctgaaagtgac
ggggagaatggaaccaagtcggaaaacactcttcaggatattatacaggagaacttcccc
aacctagcgaggcaggccaacattcaaattcaggaaatacagagaatgccacaaagatac
tcctcaagaagagcaactccaagacacataattgtcaaattcaccaaagttgaaatgatg
gaaaaaatgttaagggcagccagagagacaggtcgggttacccacaaagggaagcccatc
agactaacagcggatctcttggcagaaactctacaagccagaagagagtgggggccaata
ttcaacattcttaaagaaaagaattttcaacccagaatttcatatccagcaaaactaagc
ttcataagtgaaggagaaataaaatcctttacagacaaacaaatgctgagagattttgtc
accaccaggcctgccctacaagagctcctgaaggaagcactaaacatggaaaggaacaac
cggtaccagccactgcaaaaacatgccaaattgtaa

>gi568815592f:110775106_110993613|GENSCAN_predicted_peptide_4|142_aa
MGDFNTPLSTLDSSMRQKVNKDIQELNSALHQADLIDIYRTLHPKSTEYTFFSAPHHTYF
EIDHIVGSKALLSKCQRTEIITNYLSDHSAIKLELRIKKLTQNRSTTWKLNNLLLNDYWV
NNEMKAEIKMFFETNENKVTTY

>gi568815592f:110775106_110993613|GENSCAN_predicted_CDS_4|429_bp
atgggagactttaacaccccactgtcaacattagacagttcaatgagacagaaagttaac
aaggatatccaggaattgaactcagctctgcaccaagcagacctaatagacatctacaga
actctccaccccaaatcaacagaatatacattcttctcagcaccacatcacacttatttc
gaaattgaccacatagttggaagtaaagcactcctcagcaaatgtcaaagaacagaaatt
ataacaaactatctctcagaccacagtgcaattaaactagaactcaggattaagaaactc
actcaaaatcgctcaactacatggaaattgaacaacctgctcctgaatgactactgggta
aataatgaaatgaaggcagaaataaagatgttctttgaaaccaatgagaacaaagtcaca
acatactag

>gi568815592f:110775106_110993613|GENSCAN_predicted_peptide_5|220_aa
MSELPFTIASKRIKYLGIQLTRDVKDLFKENYKPLLNEIKEDTNKWKNIPCSWIGRINIV
KVAILPKVLYRFNAIPIKLPMTFFMELEKTTLKFIWNKKRACIAKRVLSQKNKAGGITLH
DFKLYYKATVTKTAWYSYQNRDIDQWNTTEPSEIIPHIYNHLIFDKPDKNKKWRKDSLFN
KWCWENWLAICRELKLDPFLTPYTKINSRQIKDLNVRPKP

>gi568815592f:110775106_110993613|GENSCAN_predicted_CDS_5|663_bp
atgagtgaactcccattcacaattgcttcaaagagaataaaatacctaggaatccaactt
acaagggatgtgaaggacctcttcaaggagaactacaaaccactgctcaatgaaataaaa
gaggacacaaacaaatggaagaacattccatgctcatggataggaagaatcaatatcgtg
aaagtggccatactgcccaaggtactttatagattcaatgccatccccatcaagctacca
atgactttcttcatggaattggaaaaaactactttaaagttcatatggaacaaaaaaaga
gcctgcattgccaagagagtcctgagtcaaaagaacaaagctggaggcatcacgctacat
gacttcaaactatactacaaggctacagtaaccaaaacagcatggtactcgtaccaaaac
agagatatagaccaatggaacacaacagagccctcagaaataataccacacatctacaac
catctgatctttgacaaacctgacaaaaacaagaaatggagaaaggattccctatttaat
aaatggtgctgggaaaactggctagccatatgtagagagctgaaactggatcccttcctt
acaccttacacaaaaattaattcaagacagattaaagacttaaatgttagaccaaaacca
taa

>gi568815592f:110775106_110993613|GENSCAN_predicted_peptide_6|300_aa
MGQVWALIHSTLEPFHTNDEEEGKYNEVAEEVTEQVCLPAKAKAAKEEEVHPYPSASSHY
FEEKEWPDPPDLSFLEDTGQKVVAPVTVRAAPRVTAFSSTQAGIQKCHEGPVLGPVPNRG
ISSSGHSPTCVQCLSPTTASSAAVDFCCTKAVSLLRGEPPQKVPTGMLSAAEQHLQKPAA
KTEAEQLVWWRDLITKSWEIGKIITWGAGYACVSPGPNQQLIWIPSRHLKLYHEPDAKEK
IPRGSQGPPGCSHVETDAEEDPNCHEQHPSNTATHLGTDQEAVTDGRRKPEESRTTSHNE

>gi568815592f:110775106_110993613|GENSCAN_predicted_CDS_6|903_bp
atgggacaagtgtgggctctgattcattccaccttggaaccttttcacactaatgatgag
gaggaaggaaagtataacgaagtagcagaagaggtgacagagcaggtttgtttgccagct
aaagctaaagcagcaaaagaggaagaggttcatccctacccttctgcatcctctcattat
tttgaagaaaaagagtggcctgaccctccagatctttcttttctggaggacactgggcaa
aaagtagttgccccagtgactgttcgagcagcacctcgagtgaccgctttcagttctact
caggcaggaatccagaaatgccatgaggggcctgtcctgggccccgttccaaaccggggc
atttccagctcaggccattcccccacctgtgtacaatgcctgtcccccaccacagccagt
agtgctgcagtagatttttgctgcacaaaagctgtgagccttctacgtggagaaccccca
caaaaagttccaacggggatgctatcagctgctgaacaacatctacagaaaccagctgca
aagacagaagcagaacaactggtttggtggagagatctgataacaaaaagttgggaaata
ggtaaaataataacttggggtgcaggttatgcttgtgtttctccaggaccaaatcaacag
ctgatttggataccatcaagacacctgaaactttatcatgagccagatgccaaggaaaag
attccaagaggatcccaaggaccccccggttgcagccatgttgagactgatgctgaggag
gaccccaactgtcatgagcaacacccatcgaacacagccacccacctggggacagatcaa
gaagctgtcacagatggcagaagaaaacctgaggaaagcaggacaaccagtcacaacgaa
taa

>gi568815592f:110775106_110993613|GENSCAN_predicted_peptide_7|133_aa
MIPKGGRKGGHKGWARQYTSPEEIDTQLQSEKQKAREEEEQKEGGDGAAGDPKKEKKSLD
SDESEDEDDYQQRRKGVEGLIDIENPNRVAQTTKKVTQLDLDGPKELLRREREEIEKQKA
KERYMKMHLAGKR

>gi568815592f:110775106_110993613|GENSCAN_predicted_CDS_7|402_bp
atgatacctaaaggagggagaaagggaggccacaaaggctgggcgaggcaatatacaagc
cctgaggagatcgacacgcagctgcagtctgagaagcagaaggccagggaagaagaggag
caaaaagaaggtggagacggggctgcaggtgaccccaaaaaggagaagaaatctctagac
tcagatgagagtgaagatgaagatgactaccagcaaaggcgcaaaggtgttgaagggctc
attgacatcgagaatcccaaccgggtggcacagacaaccaaaaaggtcacacaactggat
ctggatgggccaaaggagcttttgaggagagaacgagaggagattgagaagcagaaggca
aaagagcgttacatgaaaatgcacttggctgggaagagatag

>gi568815592f:110775106_110993613|GENSCAN_predicted_peptide_8|214_aa
MAAAADERSPEDGEDEEEEVEQLVLVELSGIIDSDFLSKCENKCKVLGIDTERPILQVDS
CVFAGEYEDTLGTCVIFEENVEHADTEGNNKTVLKYKCHTMKKLSMTRTLLTEKKEGEEN
IGGVEWLQIKDNDFSYRPNMICNFLHENEDEEVVASAPDKSLELEEEEIQMNDSSNLSCE
QEKPMHLEIEDSGPLIDIPSETEGSVFMETQMLP

>gi568815592f:110775106_110993613|GENSCAN_predicted_CDS_8|645_bp
atggcggcggcggcggacgagcggagtccagaggacggagaagacgaggaagaggaggta
gagcagttggttctggtggaattatcaggaattattgattcagacttcctctcaaaatgt
gaaaataaatgcaaggttttgggcattgacactgagaggcccattctgcaagtggacagc
tgtgtctttgctggggagtatgaagacactctagggacctgtgttatatttgaagaaaat
gttgaacatgctgatacagaaggcaataataaaacagtgctaaaatataaatgccataca
atgaagaagctcagcatgacaagaactctcctgacagagaagaaggaaggagaagaaaac
ataggtggggtggaatggctgcaaataaaggataatgatttctcctatcgacccaacatg
atttgtaactttctacatgaaaatgaagacgaagaagtggtagcttcagccccagataaa
tctttggaattggaagaggaagagattcaaatgaacgacagttcaaacctgagttgtgaa
caggagaaaccaatgcacttggaaatagaagattctggtcctcttattgatataccttct
gagacagaaggttctgtttttatggaaactcaaatgctgccttag

>gi568815592f:110775106_110993613|GENSCAN_predicted_peptide_9|131_aa
DKSGQRFNPTSLPSHGSHLRASPLSPGKQLALRRTRAGDRSAPTQVIRGVTRKSERPRQY
HPHHGTLSPQRSPGLRPSALTLLDPECPSLPLPATLNQGACTCPRRLRAPEQAEPEAARN
ATSGDGLVEGV

>gi568815592f:110775106_110993613|GENSCAN_predicted_CDS_9|396_bp
gataaaagcggccaacgcttcaatcccacatccctcccatcccacggctcccacttgaga
gcttccccactgtctcctggcaagcagctcgcgctgaggaggacccgggctggtgatcga
tcggcccccacccaggtaattagaggggtaaccaggaagagtgagaggccgagacagtac
caccctcatcacgggaccctttcaccccaacgctccccggggctgagacccagcgcactt
acactactcgatccagagtgtccatcgctaccgctacctgcaactcttaaccagggggca
tgcacgtgccctcggcgattacgtgcgccggaacaggcggaaccggaagctgcgcgtaac
gccacttccggggacggcctcgtagagggcgtctag