(Circular) (Six-base) MAPSORT of: pF1KB3484.seq Check: 1922 from: 1 to: 3746 pF1KB3484 3746 bp With 182 enzymes: SgfI * April 24, 2009 13:02 .. AccI GT'mk_AC Cuts at: 784 784 Size: 3746 Acc65I G'GTAC_C Cuts at: 762 762 Size: 3746 AclI AA'CG_TT Cuts at: 3586 3586 Size: 3746 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 472 1571 2003 2750 3018 472 Size: 1099 432 747 268 1200 Fragments arranged by size: 1200 1099 747 432 268 AflIII A'CryG_T Cuts at: 1098 2202 3179 1098 Size: 1104 977 1665 Fragments arranged by size: 1665 1104 977 AgeI A'CCGG_T Cuts at: 2134 2134 Size: 3746 AhdI GACnn_n'nnGTC Cuts at: 479 479 Size: 3746 AlwNI CAG_nnn'CTG Cuts at: 1051 2618 1051 Size: 1567 2179 ApaLI G'TGCA_C Cuts at: 2516 2516 Size: 3746 ApoI r'AATT_y Cuts at: 131 750 3099 3355 131 Size: 619 2349 256 522 Fragments arranged by size: 2349 619 522 256 AseI AT'TA_AT Cuts at: 20 20 Size: 3746 AsiSI GCG_AT'CGC Cuts at: 104 104 Size: 3746 AvaI C'yCGr_G Cuts at: 766 766 Size: 3746 BamHI G'GATC_C Cuts at: 771 771 Size: 3746 BanI G'GyrC_C Cuts at: 762 1176 1424 1459 762 Size: 414 248 35 3049 Fragments arranged by size: 3049 414 248 35 BanII G_rGCy'C Cuts at: 147 760 1790 147 Size: 613 1030 2103 Fragments arranged by size: 2103 1030 613 BbeI G_GCGC'C Cuts at: 1180 1428 1180 Size: 248 3498 BbsI GAAGACnn'nnnn_ Cuts at: 325 325 Size: 3746 BciVI GTATCCnnnnn_n' Cuts at: 514 601 1644 2405 3746 514 Size: 87 1043 761 1341 514 Fragments arranged by size: 1341 1043 761 514 87 BclI T'GATC_A Cuts at: 1266 1266 Size: 3746 BglII A'GATC_T Cuts at: 1261 3298 1261 Size: 2037 1709 BlpI GC'TnA_GC Cuts at: 858 858 Size: 3746 Bme1580I G_kGCm'C Cuts at: 1371 1464 2520 1371 Size: 93 1056 2597 Fragments arranged by size: 2597 1056 93 BmrI ACTGGGnnnn_n' Cuts at: 958 1039 1374 3518 958 Size: 81 335 2144 1186 Fragments arranged by size: 2144 1186 335 81 BplI GAGnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 2113 2113 Size: 3746 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 563 922 1801 2293 2591 563 Size: 359 879 492 298 1718 Fragments arranged by size: 1718 879 492 359 298 BsaI GGTCTCn'nnnn_ Cuts at: 3450 3450 Size: 3746 BsaAI yAC'GTr Cuts at: 1099 1099 Size: 3746 BsaBI GATnn'nnATC Cuts at: 6 1260 3297 6 Size: 1254 2037 455 Fragments arranged by size: 2037 1254 455 BsaHI Gr'CG_yC Cuts at: 1177 1425 2127 3623 1177 Size: 248 702 1496 1300 Fragments arranged by size: 1496 1300 702 248 BsaWI w'CCGG_w Cuts at: 935 1456 2134 2408 2555 2966 935 Size: 521 678 274 147 411 1715 Fragments arranged by size: 1715 678 521 411 274 147 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 195 195 Size: 3746 BseYI C'CCAG_C Cuts at: 1171 1929 2506 3002 1171 Size: 758 577 496 1915 Fragments arranged by size: 1915 758 577 496 BsiEI CG_ry'CG Cuts at: 104 1288 1334 2542 104 Size: 1184 46 1208 1308 Fragments arranged by size: 1308 1208 1184 46 BsiHKAI G_wGCw'C Cuts at: 147 760 1538 1728 2520 147 Size: 613 778 190 792 1373 Fragments arranged by size: 1373 792 778 613 190 Bsp1286I G_dGCh'C Cuts at: 147 760 1371 1464 1538 1728 1790 2520 147 Size: 613 611 93 74 190 62 730 1373 Fragments arranged by size: 1373 730 613 611 190 93 74 62 BspEI T'CCGG_A Cuts at: 2966 2966 Size: 3746 BspHI T'CATG_A Cuts at: 2922 2922 Size: 3746 BspMI ACCTGCnnnn'nnnn_ Cuts at: 796 1010 1312 1693 796 Size: 214 302 381 2849 Fragments arranged by size: 2849 381 302 214 BsrBI CCG'CTC Cuts at: 50 2038 2092 3576 3741 50 Size: 1988 54 1484 165 55 Fragments arranged by size: 1988 1484 165 55 54 BsrDI GCAATG_nn' Cuts at: 450 636 1658 450 Size: 186 1022 2538 Fragments arranged by size: 2538 1022 186 BsrFI r'CCGG_y Cuts at: 1744 1925 2134 1744 Size: 181 209 3356 Fragments arranged by size: 3356 209 181 BssSI C'ACGA_G Cuts at: 2017 2375 2017 Size: 358 3388 BstAPI GCAn_nnn'nTGC Cuts at: 1123 1123 Size: 3746 BstBI TT'CG_AA Cuts at: 2107 2107 Size: 3746 BstYI r'GATC_y Cuts at: 1 771 1238 1261 1596 1842 2854 2940 2952 Size: 770 467 23 335 246 1012 86 12 Cuts at: 2952 3298 1 Size: 346 449 Fragments arranged by size: 1012 770 467 449 346 335 246 86 23 12 BtgI C'CryG_G Cuts at: 107 107 Size: 3746 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 1696 1877 2040 1696 Size: 181 163 3402 Fragments arranged by size: 3402 181 163 BtsI GCAGTG_nn' Cuts at: 989 989 Size: 3746 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 327 362 327 Size: 35 3711 DraI TTT'AAA Cuts at: 745 745 Size: 3746 DrdI GACnn_nn'nnGTC Cuts at: 1452 2310 1452 Size: 858 2888 EaeI y'GGCC_r Cuts at: 1331 1505 1896 1923 3268 1331 Size: 174 391 27 1345 1809 Fragments arranged by size: 1809 1345 391 174 27 EagI C'GGCC_G Cuts at: 1331 1331 Size: 3746 EarI CTCTTCn'nnn_ Cuts at: 560 1769 1979 560 Size: 1209 210 2327 Fragments arranged by size: 2327 1209 210 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 1954 2264 2410 3556 1954 Size: 310 146 1146 2144 Fragments arranged by size: 2144 1146 310 146 EcoICRI GAG'CTC Cuts at: 145 758 145 Size: 613 3133 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 472 1571 2003 2750 3018 472 Size: 1099 432 747 268 1200 Fragments arranged by size: 1200 1099 747 432 268 EcoO109I rG'GnC_Cy Cuts at: 885 885 Size: 3746 EcoRI G'AATT_C Cuts at: 750 750 Size: 3746 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 1765 1765 Size: 3746 FspI TGC'GCA Cuts at: 1527 1527 Size: 3746 HaeII r_GCGC'y Cuts at: 1180 1428 2450 3429 1180 Size: 248 1022 979 1497 Fragments arranged by size: 1497 1022 979 248 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 103 135 465 497 627 659 1588 1618 1620 Size: 32 330 32 130 32 929 30 2 Cuts at: 1620 1650 103 Size: 30 2199 Fragments arranged by size: 2199 929 330 130 32 32 32 30 30 2 HincII GTy'rAC Cuts at: 785 785 Size: 3746 KasI G'GCGC_C Cuts at: 1176 1424 1176 Size: 248 3498 KpnI G_GTAC'C Cuts at: 766 766 Size: 3746 MluI A'CGCG_T Cuts at: 3179 3179 Size: 3746 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 2417 2601 2417 Size: 184 3562 MscI TGG'CCA Cuts at: 1507 1507 Size: 3746 MslI CAynn'nnrTG Cuts at: 235 1735 1862 235 Size: 1500 127 2119 Fragments arranged by size: 2119 1500 127 MspA1I CmG'CkG Cuts at: 857 1171 1531 2544 2789 857 Size: 314 360 1013 245 1814 Fragments arranged by size: 1814 1013 360 314 245 NaeI GCC'GGC Cuts at: 1927 1927 Size: 3746 NarI GG'CG_CC Cuts at: 1177 1425 1177 Size: 248 3498 NcoI C'CATG_G Cuts at: 107 107 Size: 3746 NgoMIV G'CCGG_C Cuts at: 1925 1925 Size: 3746 NspI r_CATG'y Cuts at: 799 1299 2206 799 Size: 500 907 2339 Fragments arranged by size: 2339 907 500 PciI A'CATG_T Cuts at: 2202 2202 Size: 3746 PmeI GTTT'AAAC Cuts at: 745 745 Size: 3746 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 2885 2917 2885 Size: 32 3714 PsiI TTA'TAA Cuts at: 404 404 Size: 3746 PstI C_TGCA'G Cuts at: 793 1478 793 Size: 685 3061 PvuI CG_AT'CG Cuts at: 104 104 Size: 3746 PvuII CAG'CTG Cuts at: 1171 1531 1171 Size: 360 3386 RsrII CG'GwC_CG Cuts at: 1941 1941 Size: 3746 SacI G_AGCT'C Cuts at: 147 760 147 Size: 613 3133 SalI G'TCGA_C Cuts at: 783 783 Size: 3746 SapI GCTCTTCn'nnn_ Cuts at: 1769 1979 1769 Size: 210 3536 SbfI CC_TGCA'GG Cuts at: 793 793 Size: 3746 ScaI AGT'ACT Cuts at: 3263 3263 Size: 3746 SfcI C'TryA_G Cuts at: 33 789 1474 2467 2658 33 Size: 756 685 993 191 1121 Fragments arranged by size: 1121 993 756 685 191 SfoI GGC'GCC Cuts at: 1178 1426 1178 Size: 248 3498 SgfI GCG_AT'CGC Cuts at: 104 104 Size: 3746 SmaI CCC'GGG Cuts at: 768 768 Size: 3746 SmlI C'TyrA_G Cuts at: 578 901 1816 2308 2570 578 Size: 323 915 492 262 1754 Fragments arranged by size: 1754 915 492 323 262 SpeI A'CTAG_T Cuts at: 67 67 Size: 3746 SphI G_CATG'C Cuts at: 799 1299 799 Size: 500 3246 StyI C'CwwG_G Cuts at: 107 880 1234 107 Size: 773 354 2619 Fragments arranged by size: 2619 773 354 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 1329 1462 1921 2130 1329 Size: 133 459 209 2945 Fragments arranged by size: 2945 459 209 133 TatI w'GTAC_w Cuts at: 3261 3261 Size: 3746 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 3263 3295 3263 Size: 32 3714 Tth111I GACn'n_nGTC Cuts at: 1543 1543 Size: 3746 XbaI T'CTAG_A Cuts at: 777 777 Size: 3746 XcmI CCAnnnn_n'nnnnTGG Cuts at: 237 1241 237 Size: 1004 2742 XmaI C'CCGG_G Cuts at: 766 766 Size: 3746 XmnI GAAnn'nnTTC Cuts at: 131 131 Size: 3746 Enzymes that do cut: AccI Acc65I AclI AcuI AflIII AgeI AhdI AlwNI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbeI BbsI BciVI BclI BglII BlpI Bme1580I BmrI BplI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BseRI BseYI BsiEI BsiHKAI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BssSI BstAPI BstBI BstYI BtgI BtgZI BtsI CspCI DraI DrdI EaeI EagI EarI EciI EcoICRI Eco57MI EcoO109I EcoRI FalI FspI HaeII Hin4I HincII KasI KpnI MluI MmeI MscI MslI MspA1I NaeI NarI NcoI NgoMIV NspI PciI PmeI PpiI PsiI PstI PvuI PvuII RsrII SacI SalI SapI SbfI ScaI SfcI SfoI SgfI SmaI SmlI SpeI SphI StyI TaqII TatI TstI Tth111I XbaI XcmI XmaI XmnI Enzymes that do not cut: AarI AatII AfeI AflII AleI AlfI AloI ApaI AscI AvrII BaeI BbvCI BcgI BfrBI BglI BmgBI BmtI BpmI Bpu10I BsaXI BsgI BsiWI BsmI BsmBI BsrGI BssHII BstEII BstXI BstZ17I Bsu36I ClaI DraIII EcoNI EcoRV FseI FspAI HindIII HpaI MfeI NdeI NheI NotI NruI NsiI PacI PasI PflMI PfoI PmlI PpuMI PshAI PspOMI PspXI PsrI SacII SanDI SexAI SfiI SgrAI SnaBI SrfI SspI StuI SwaI XhoI ZraI