FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1046, 145 aa
  1>>>pF1KE1046 145 - 145 aa - 145 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3405+/-0.000749; mu= 10.4944+/- 0.045
 mean_var=52.1473+/-10.775, 0's: 0 Z-trim(106.3): 17  B-trim: 0 in 0/48
 Lambda= 0.177606
 statistics sampled from 8908 (8919) to 8908 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.681), E-opt: 0.2 (0.274), width:  16
 Scan time:  1.670

The best scores are:                                      opt bits E(32554)
CCDS11125.1 TRAPPC1 gene_id:58485|Hs108|chr17      ( 145)  977 257.9 1.6e-69


>>CCDS11125.1 TRAPPC1 gene_id:58485|Hs108|chr17           (145 aa)
 initn: 977 init1: 977 opt: 977  Z-score: 1361.7  bits: 257.9 E(32554): 1.6e-69
Smith-Waterman score: 977; 100.0% identity (100.0% similar) in 145 aa overlap (1-145:1-145)

               10        20        30        40        50        60
pF1KE1 MTVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MTVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 FLAFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVELVVKNPLCPLGQT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 FLAFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVELVVKNPLCPLGQT
               70        80        90       100       110       120

              130       140     
pF1KE1 VQSELFRSRLDSYVRSLPFFSARAG
       :::::::::::::::::::::::::
CCDS11 VQSELFRSRLDSYVRSLPFFSARAG
              130       140     




145 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 07:46:21 2016 done: Sat Nov  5 07:46:21 2016
 Total Scan time:  1.670 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]