GENSCAN 1.0	Date run:  5-Nov-116	Time: 23:09:22

Sequence gi568815588r:13178304_13400042 : 221739 bp : 45.67% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   2139   2304  166  0  1   75   58   114 0.537   7.06
 1.02 Intr +   4630   4797  168  0  0   48   94   158 0.996  12.54
 1.03 Intr +   7861   7977  117  0  0  119    8    85 0.725   4.26
 1.04 Intr +  10578  10777  200  2  2  126   64   194 0.867  18.95
 1.05 Intr +  14148  14265  118  0  1   88   95    70 0.775   8.17
 1.06 Intr +  16748  16966  219  1  0   36   88   122 0.560   5.50
 1.07 Intr +  19320  19464  145  2  1   90   79    78 0.991   6.96
 1.08 Intr +  20386  20504  119  2  2   92   94    56 0.796   6.78
 1.09 Intr +  23118  23231  114  2  0   69   76    94 0.659   6.94
 1.10 Intr +  25916  26061  146  1  2   60   80   124 0.518   7.88
 1.11 Intr +  38982  39737  756  0  0   70   53   188 0.338   4.08
 1.12 Term +  40085  40121   37  2  1   93   37    27 0.445  -5.09
 1.13 PlyA +  40391  40396    6                               1.05

 2.06 PlyA -  43482  43477    6                               1.05
 2.05 Term -  43897  43800   98  2  2  115   42    93 0.978   5.53
 2.04 Intr -  51406  51308   99  2  0  101   95   181 0.993  20.18
 2.03 Intr -  55330  55235   96  2  0   78   91    88 0.913   8.08
 2.02 Intr -  55497  55432   66  1  0  116  113    27 0.967   6.88
 2.01 Init -  55955  55898   58  2  1   90   75    83 0.959   6.74
 2.00 Prom -  63639  63600   40                              -6.36

 3.00 Prom +  76137  76176   40                              -2.66
 3.01 Init +  81569  81746  178  1  1   97   40   143 0.078   9.99
 3.02 Intr +  85277  85423  147  0  0   77   85    16 0.090   0.41
 3.03 Intr +  94405  94530  126  2  0   48  100    58 0.220   3.65
 3.04 Term +  96907  96944   38  2  2  116   44    34 0.343  -0.70
 3.05 PlyA +  97151  97156    6                               1.05

 4.07 PlyA -  98570  98565    6                               1.05
 4.06 Term - 100051  99998   54  1  0   85   44    53 0.776  -1.84
 4.05 Intr - 102807 102673  135  0  0   55   95   181 0.971  16.26
 4.04 Intr - 105536 105387  150  2  0   82  121   187 0.997  21.76
 4.03 Intr - 110238 110057  182  1  2   59   92   166 0.438  13.69
 4.02 Intr - 113609 113522   88  2  1   84   59    21 0.133  -1.66
 4.01 Init - 116238 116125  114  0  0   47   55   138 0.133   6.61
 4.00 Prom - 124758 124719   40                              -1.96

 5.02 PlyA - 125446 125441    6                               1.05
 5.01 Sngl - 130198 129842  357  1  0   63   41   243 0.927  13.16
 5.00 Prom - 138896 138857   40                              -3.16

 6.09 PlyA - 139158 139153    6                               1.05
 6.08 Term - 141053 140839  215  0  2   91   33    78 0.810  -0.01
 6.07 Intr - 144744 144532  213  1  0   80   92   286 0.580  26.89
 6.06 Intr - 150147 150048  100  0  1   68   80   128 0.654   9.68
 6.05 Intr - 151485 151395   91  2  1   90   78    84 0.995   7.60
 6.04 Intr - 155668 155514  155  1  2   96  103    55 0.998   6.67
 6.03 Intr - 158047 157940  108  1  0  122  110   116 0.999  17.68
 6.02 Intr - 159572 159478   95  0  2   65  115    36 0.694   3.68
 6.01 Init - 169177 169063  115  1  1   79   32   204 0.121  12.27
 6.00 Prom - 205492 205453   40                              -0.66

 7.03 PlyA - 205549 205544    6                              -0.45
 7.02 Term - 208215 207993  223  2  1  108   44    66 0.488   0.59
 7.01 Intr - 214076 213955  122  2  2  108  116    13 0.840   5.39

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init + 169800 169929  130  2  1   69  -18   264 0.839  12.21


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815588r:13178304_13400042|GENSCAN_predicted_peptide_1|768_aa
XRPRVSSTEMNKKMTGRKLIRLSQIKEKMAREKLEEIDWVTFGVILKKVTPQSVNSGKTF
SIWKLNDLRDLTQCVSLFLFGEVHKALWKTEQGTVVGILNANPMKPKDGSEEVCLSIDHP
QKVLIMGEALDLGTCKAKKKNGEPCTQTVNLRDCEYCQYHVQAQYKKLSAKRADLQSTFS
GGRIPKKFARRGTSLKERLCQDGFYYGGVSSASYAASMDYGEPKTSHQVHLGLSTLEATE
AADVGDEEKEIRRNTEASSSEVESPAVPSSSRQPPAQPPRTGSEFPRLEGAPATMTPKLG
RGVLEGDDVLFYDESPPPRPKLSALAEAKKLAAITKLRAKGQVLTKTNPNSIKKKQKDPQ
DILEVKERVEKNTMFSSQAEDELEPARKKRREQLAYLESEEFQKILKAKSKHTGILKEAE
AEMQERYFEPLVKKEQMEEKMRNIREVKCRVVTCKTCAYTHFKLLETCVSEQHEYHWHDG
VKRFFKCPCGNRSISLDRLPNKHCSTYTKIGTIQRRLAWPLRKDDTQIREAFHIFMPHIY
NYLIFDKPEKNKQWGKDSLFNKWCWENWLAICRKLKLDPFLTPYTKINSRWIKDLNVRPK
TIKTLEENLGITIQDIGVGKDFMSKTPKAMATKAKIDKWDLIKLKSFCTAKETTIRVNRQ
PTTWEKIFTTYSSDKGLISRIYNELKQIYKKKTNNPIKKWAKDMNRHFSKEDIYAAKKHM
KKCSSSLAIREMQIKTTMRYHLTPVRMAIIKKSGNNRDMDEIGNHHSQ

>gi568815588r:13178304_13400042|GENSCAN_predicted_CDS_1|2307_bp
nngcggcctcgagtatcctccacagaaatgaacaagaaaatgaccggccgaaaactgatc
agactgtctcagatcaaggaaaagatggccagagagaagctggaagaaatagattgggtg
acatttggggttatattgaagaaggttacgccacagagtgtgaatagtggaaaaaccttc
agcatatggaaactgaatgatcttcgtgacctgacacaatgtgtgtccttgttcttattt
ggagaagttcacaaagcgctctggaagacggagcaggggactgtcgtagggatcctcaat
gccaaccccatgaagcccaaggatggttcagaggaggtgtgtttatctatcgatcatcct
cagaaggtcttaattatgggtgaagctcttgacctgggaacctgtaaagccaagaagaag
aatggagagccgtgcacgcagactgtgaatttgcgtgactgtgagtactgtcagtaccat
gtccaggctcagtacaagaagctcagcgcaaagcgtgcggatctgcagtccaccttctct
ggaggacgaattccaaagaagtttgcccgcagaggcaccagcctcaaagaacggctgtgc
caagatggcttttactacggaggggtttcttctgcctcgtatgcagcttcaatggattat
ggggagcccaaaaccagccatcaagtccatctcggcctcagcactcttgaagcaacagaa
gcagcggatgttggagatgaggagaaggaaatcagaagaaatacagaagcgagctcaagt
gaagttgagagcccagctgtgccatcttcatcaagacagccccctgctcagcctccacgg
acaggatccgagttccccaggctggagggagccccggccacaatgacgcccaagctgggg
cgaggtgtcttggaaggagatgatgttctcttttatgatgagtcaccaccaccaagacca
aaactgagtgctttagcagaagccaaaaagttagctgctatcaccaaattaagggcaaaa
ggccaggttcttacaaaaacaaacccaaacagcattaagaagaaacaaaaggaccctcag
gacatcctggaggtgaaggaacgtgtagaaaaaaacaccatgttttcttctcaagctgag
gatgaattggagcctgccaggaaaaaaaggagagaacaacttgcctatctggaatctgag
gaatttcagaaaatcctaaaagcaaaatcaaaacacacaggcatcctgaaagaggccgag
gctgagatgcaggagcgctactttgagccactggtgaaaaaagaacaaatggaagaaaag
atgagaaacatcagagaagtgaagtgccgtgtcgtgacatgcaagacgtgcgcctatacc
cacttcaagctgctggagacctgcgtcagtgagcagcatgaataccactggcatgatggt
gtgaagaggtttttcaaatgtccctgtggaaacagaagcatctccttggacagactcccg
aacaagcactgcagcacatatactaaaattggaacgatacagagaagattagcatggccc
ctgcgcaaggatgacacgcaaattcgtgaagcgttccatatttttatgccgcatatctac
aactatctgatctttgacaaacctgagaaaaacaagcaatggggaaaggattccctattt
aataaatggtgctgggaaaactggctagccatatgtagaaagctgaaactggatcccttc
cttacaccttatacaaaaatcaattcaagatggattaaagatttaaacgttagacctaaa
accataaaaaccctagaagaaaacctaggcattaccattcaggacataggcgtgggcaag
gacttcatgtccaaaacaccaaaagcaatggcaacaaaagccaaaattgacaaatgggat
ctaattaaactaaagagcttctgcacagcaaaagaaactaccatcagagtgaacaggcaa
cctacaacatgggagaaaattttcacaacctactcatctgacaaagggctaatatccaga
atctacaatgaactcaaacaaatttacaagaaaaaaacaaacaaccccatcaaaaagtgg
gcgaaggacatgaacagacacttctcaaaagaagacatttatgcagccaaaaaacacatg
aaaaaatgctcatcatcactggccatcagagaaatgcaaatcaaaaccactatgagatat
catctcacaccagttagaatggcaatcattaaaaagtcaggaaacaacagggacatggat
gaaattggaaaccatcattctcagtaa

>gi568815588r:13178304_13400042|GENSCAN_predicted_peptide_2|138_aa
MTWRQAVLLSCFSAVVLLSMLREGTSVSVGTMQMAGEEASEDAKQKIFMQESDASNFLKR
RGKRSPKSRDEVNVENRQKLRVDELRREYYEEQRNEFENFVEEQNDEQEERSREAVEQWR
QWHYDGLHPSYLYNRHHT

>gi568815588r:13178304_13400042|GENSCAN_predicted_CDS_2|417_bp
atgacttggagacaggccgtcctgctgtcttgcttctccgccgtggtgctcctgtctatg
ctgagagagggaaccagtgtatctgtgggcaccatgcagatggcgggagaagaggcgagt
gaagatgcaaaacagaagattttcatgcaggaatcagatgcctcgaatttcctcaagagg
cgcggcaagcggtcccccaagtccagagatgaggtcaatgtggaaaacaggcagaagctt
cgggttgatgagctgcggagagaatattacgaggaacaaaggaatgaatttgagaacttc
gtggaggaacaaaacgatgagcaggaagagaggagccgggaggctgtggagcagtggcgc
cagtggcactatgacggcctgcacccatcctatctctacaaccgccaccacacctga

>gi568815588r:13178304_13400042|GENSCAN_predicted_peptide_3|162_aa
MPEPPTHSMGSCVARASPTSTTPCSTVPSPIDHPRAEECECTAQDWQAAPPAAPVPDPLG
VVIVPGTSWSLSKYLLKGIDVEGLVESWEKWEGWPGNCEGTRAGVPVRASKRVVNFTCFK
SKLNQCKKSCFFASPTNTVFQEMPSLKKNEGHLTKAFNGLQT

>gi568815588r:13178304_13400042|GENSCAN_predicted_CDS_3|489_bp
atgcctgagcctcccacccactccatgggctcctgtgtggcccgagcctccccgacgagc
accaccccctgctccacggtgcccagtcccatcgaccacccaagggctgaggaatgcgag
tgcacggcgcaggactggcaggcagctccacctgcagccccagtgccggatccactaggg
gttgtgatagtgcctggaacatcatggtcactcagtaaatatttactaaagggtattgac
gtggagggcttggttgaaagctgggagaagtgggaagggtggccaggcaactgtgagggg
acaagggctggagtgccggtgcgagcttctaaacgagtagtaaatttcacgtgcttcaaa
tcaaaattaaatcaatgcaaaaagtcctgtttctttgcctccccaacaaacaccgtgttc
caagaaatgccaagcctgaagaagaatgaaggacacctaacaaaggccttcaatgggctt
cagacttga

>gi568815588r:13178304_13400042|GENSCAN_predicted_peptide_4|240_aa
MRDVTISKSEYAPSEKMITKVQDFQEDKELFRYCTLPEILKYVECFTGPNIMAMHTMLIN
KPPDSGNCKKTSRHPLHQDLHYFPFRPSDLIVCAWTAMEHISRNNGCLVVLPGTHKGSLK
PHDYPKWEGGVNKMFHGIQDYEENKARVHLVMEKGDTVFFHPLLIHGSGQNKTQGFRKAI
SCHFASADCHYIDVKGTSQENIEKEVVGIAHKFFGAENSVNLKDIWMFRARLVKGERTNL

>gi568815588r:13178304_13400042|GENSCAN_predicted_CDS_4|723_bp
atgagagatgtgaccatttcgaaatccgaatatgctccaagtgagaagatgatcacgaag
gtccaggatttccaggaagataaggagctcttcagatactgcactctccccgagattctg
aaatatgtggagtgcttcactggacctaatattatggccatgcacacaatgttgataaac
aaacctccagattctggtaattgcaagaagacgtcccgtcaccccctgcaccaggacctg
cactatttccccttcaggcccagcgatctcatcgtttgcgcctggacggcgatggagcac
atcagccggaacaacggctgtctggttgtgctcccaggcacacacaagggctccctgaag
ccccacgattaccccaagtgggaggggggagttaacaaaatgttccacgggatccaggac
tacgaggaaaacaaggcccgggtgcacctggtgatggagaagggcgacactgttttcttc
catcctttgctcatccacggatctggtcagaataaaacccagggattccggaaggcaatt
tcctgccatttcgccagtgccgattgccactacattgacgtgaagggcaccagtcaagaa
aacatcgagaaggaagttgtaggaatagcacataaattctttggagctgaaaatagcgtg
aacttgaaggatatttggatgtttcgagctcgacttgtgaaaggagaaagaaccaatctt
tga

>gi568815588r:13178304_13400042|GENSCAN_predicted_peptide_5|118_aa
MRRHLEFKKLHASIEFLTMAKNKFRGQKSRNVFRIASQKSFKAKNRVKPITANLKKIHIM
NDEKVSRVNKAFGSVQEELPHFSKGLSLDLLQKELIPQQRHQSKPVNVDEATKLMAQL

>gi568815588r:13178304_13400042|GENSCAN_predicted_CDS_5|357_bp
atgcggcgtcacctggagtttaagaagctgcacgcaagtattgaattcctgacaatggcc
aagaacaaatttagagggcagaagtccaggaacgtatttcgcatagctagccaaaaaagc
tttaaggctaaaaacagagtaaaaccaattaccgctaatcttaagaagatacacattatg
aatgatgaaaaagtcagcagagtaaacaaagcttttggaagtgtacaagaggaacttcca
catttctcaaaaggcctttctcttgatcttctgcagaaagagctgattcctcagcagcgt
catcagagcaaaccagttaatgttgatgaagctacaaaactaatggctcagctgtaa

>gi568815588r:13178304_13400042|GENSCAN_predicted_peptide_6|363_aa
MARPGPRAAASAPPPARSPGLLGLPRRRRGPEPEPEPEGTSDKYQIIGNLYFFRTSVRFL
LWSNTLETGQGRIACANVLSDLYAMGVTECDNMLMLLGVSNKMTDRERDKVMPLIIQGFK
DAAEEAGTSVTGGQTVLNPWIVLGGVATTVCQPNEFIMPDNAVPGDVLVLTKPLGTQVAV
AVHQWLDIPEKWNKIKLVVTQEDVELAYQEAMMNMARLNRTAAGLMHTFNAHAATDITGF
GILGHAQNLAKQQRNEVSFVIHNLPVLAKMAAVSKACGNMFGLMHGTCPETSGGLLICLP
REQAARFCAEIKSPKYGEGHQAWIIGIVEKGNRTARIIDKPRIIEVAPQVATQNVNPTPG
ATS

>gi568815588r:13178304_13400042|GENSCAN_predicted_CDS_6|1092_bp
atggcccggccggggccccgagctgccgcctccgccccgccgccggcccgcagcccgggc
ctgctgggccttccgaggcggcggcgagggcctgagcctgagcctgagcccgaaggtacc
agtgacaaataccagattattggaaacctatatttcttccgcacatctgtccgttttctc
ctctggagcaatactcttgagactgggcagggcaggatagcgtgtgccaatgtcctcagt
gacctctatgcaatgggggtcacggaatgtgacaatatgctgatgctccttggagtcagt
aataaaatgaccgacagggaaagggataaagtgatgcctctgattatccaaggttttaaa
gacgcagctgaggaagcaggaacatctgtaacaggcggccaaacagtactaaacccctgg
attgtcctgggaggagtggctaccactgtctgccaacccaatgaatttatcatgccagac
aatgcagtgccaggggacgtgctggtgctgacaaaacccctggggacacaggtggcagtg
gctgtgcaccagtggctggatatccctgagaaatggaataagattaaactagtggtcacc
caagaagatgtagagctggcctaccaggaggcgatgatgaacatggcgaggctcaacagg
acagctgcaggactcatgcacacgttcaatgcccacgccgccactgacatcacgggcttc
gggattttgggccatgcgcagaacctggccaagcagcagaggaacgaggtgtcgtttgta
attcacaacctcccggtgctggccaagatggctgcggtgagcaaggcctgcggaaacatg
ttcggcctcatgcacgggacctgcccggagacttcaggcggccttctgatctgtttacca
cgtgagcaagcagctcggttctgtgcagagataaagtcccccaaatatggtgaaggccac
caagcatggattattgggattgtagagaagggcaaccgcacagccagaatcatagacaaa
ccccggatcatcgaggtcgcaccacaagtggccactcaaaatgtgaatcccacacccggg
gccacctcttaa

>gi568815588r:13178304_13400042|GENSCAN_predicted_peptide_7|114_aa
DVLTLCPPSHSKHNHEFQSLQGAVTGAGKRKVIQLPIGDERFPNSHYLDPTHFPQKAAEN
NNLSQKAIRNYSLIGGLPALFTSLFQNHWEHQQILPTCEMGRTLAVLPAETALG

>gi568815588r:13178304_13400042|GENSCAN_predicted_CDS_7|345_bp
gatgtcctcaccctctgcccaccttcccactcaaagcacaaccatgagttccaatcatta
cagggtgctgtgacaggtgctgggaaaagaaaggtcatacaactgccaataggggatgaa
aggttccccaattcccattacttagatcctactcatttcccacagaaggctgcagagaac
aataacctcagccagaaagcaatcaggaattattcactgattggtgggttgcctgcactt
ttcacatctcttttccagaaccactgggagcaccagcagatcctgcccacctgtgagatg
ggcagaaccctggccgtcctgcctgcggagacagctttaggatga