GENSCAN 1.0	Date run:  8-Nov-116	Time: 17:14:25

Sequence gi568815579r:42483249_42694828 : 211580 bp : 44.24% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.11 PlyA -     55     50    6                               1.05
 1.10 Term -   2052   1825  228  0  0   27   32   172 0.486   2.13
 1.09 Intr -   5894   5838   57  2  0  106   87    30 0.036   3.78
 1.08 Intr -  27672  27641   32  1  2  100  121    30 0.004   5.35
 1.07 Intr -  28380  28328   53  2  2   35   98    16 0.003  -4.15
 1.06 Intr -  29231  29102  130  0  1  104   80    79 0.005   8.45
 1.05 Intr -  35987  35700  288  0  0   86   93   281 0.301  25.62
 1.04 Intr -  38240  38019  222  0  0   97  119   142 0.560  16.30
 1.03 Intr -  38954  38676  279  0  0   61   76   280 0.998  21.55
 1.02 Intr -  44152  43793  360  2  0  110   84   306 0.527  27.59
 1.01 Init -  45126  45063   64  0  1  107   94    20 0.742   3.95
 1.00 Prom -  61250  61211   40                              -4.16

 2.11 PlyA -  61332  61327    6                               1.05
 2.10 Term -  63571  63306  266  2  2  124   40    80 0.216   2.47
 2.09 Intr -  65408  65311   98  1  2  103   24    53 0.204   0.05
 2.08 Intr -  70627  70586   42  0  0  125  105    38 0.335   6.56
 2.07 Intr -  72675  72558  118  1  1  104   74    45 0.180   4.22
 2.06 Intr -  89195  89112   84  0  0  112    0    73 0.011   0.69
 2.05 Intr - 105790 105536  255  2  0  110  119    84 0.772  11.12
 2.04 Intr - 106487 106209  279  0  0   72   65   244 0.941  17.95
 2.03 Intr - 107127 107083   45  1  0  116  108     1 0.902   3.28
 2.02 Intr - 110652 110293  360  1  0   72   78   358 0.859  28.39
 2.01 Init - 111580 111517   64  1  1   98   94    42 0.872   5.16
 2.00 Prom - 115419 115380   40                              -3.46

 3.08 PlyA - 115661 115656    6                               1.05
 3.07 Term - 118731 118538  194  1  2   75   46    91 0.211   1.18
 3.06 Intr - 142803 142549  255  1  0  107   95   205 0.657  20.52
 3.05 Intr - 143199 143052  148  0  1   49   69   -17 0.169  -7.69
 3.04 Intr - 143482 143247  236  2  2   58   75   218 0.666  14.91
 3.03 Intr - 148626 148490  137  2  2    1   84   162 0.862   7.31
 3.02 Intr - 148849 148714  136  2  1  124   47    51 0.853   4.23
 3.01 Init - 152538 152532    7  0  1   61  113     0 0.538   0.89
 3.00 Prom - 152965 152926   40                              -2.76

 4.00 Prom + 162518 162557   40                              -1.66
 4.01 Init + 166620 166625    6  2  0   72   76     0 0.281  -1.93
 4.02 Intr + 167839 167933   95  0  2   81   65    90 0.554   4.76
 4.03 Intr + 168039 168167  129  0  0   44   94    60 0.589   2.01
 4.04 Intr + 172116 172252  137  0  2   21   78    96 0.490   2.11
 4.05 Intr + 178397 178807  411  0  0   34   62   275 0.487  13.66
 4.06 Intr + 178975 179127  153  2  0   53   89    53 0.404   1.94
 4.07 Intr + 182668 182684   17  2  2   97   98    12 0.445  -1.64
 4.08 Term + 187122 187235  114  2  0   26   53   149 0.834   3.77
 4.09 PlyA + 187594 187599    6                               1.05

 5.02 PlyA - 188026 188021    6                               1.05
 5.01 Sngl - 197287 196775  513  1  0   70   37   183 0.966   7.46

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init +  29053  29198  146  0  2   82   94   159 0.969  15.49
S.002 Term +  30414  30438   25  0  1  144   51    32 0.990   2.80


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815579r:42483249_42694828|GENSCAN_predicted_peptide_1|570_aa
MGHLSAPLHRVRVPWQGLLLTASLLTFWNPPTTAQLTTESMPFNVAEGKEVLLLVHNLPQ
QLFGYSWYKGERVDGNRQIVGYAIGTQQATPGPANSGRETIYPNASLLIQNVTQNDTGFY
TLQVIKSDLVNEEATGQFHVYPELPKPSISSNNSNPVEDKDAVAFTCEPETQDTTYLWWI
NNQSLPVSPRLQLSNGNRTLTLLSVTRNDTGPYECEIQNPVSANRSDPVTLNVTYTYYRP
GANLSLSCYAASNPPAQYSWLINGTFQQSTQELFIPNITVNNSGSYTCHANNSVTGCNRT
TVKTIIVTELSPVVAKPQIKASKTTVTGDKDSVNLTCSTNDTGISIRWFFKNQSLPSSER
MKLSQGNTTLSINPVKREDAGTYWCEVFNPISKNQSDPIMLNVNYNALPQENGLSPGAIA
GIVIGVVALVALIAVALACFLHFGKTGRASDQRDLTEHKPSVSNHTQDHSNDPPNKDTIG
DNGSFMKALTGMACQSKEKAPELPKPKKNRCFMCRKKVGLTGLTADVEICFVDFTVNSDK
HNCPYDYKAEAAAKIRKENPVVVAEKIQRI

>gi568815579r:42483249_42694828|GENSCAN_predicted_CDS_1|1713_bp
atggggcacctctcagccccacttcacagagtgcgtgtaccctggcaggggcttctgctc
acagcctcacttctaaccttctggaacccgcccaccactgcccagctcactactgaatcc
atgccattcaatgttgcagaggggaaggaggttcttctccttgtccacaatctgccccag
caactttttggctacagctggtacaaaggggaaagagtggatggcaaccgtcaaattgta
ggatatgcaataggaactcaacaagctaccccagggcccgcaaacagcggtcgagagaca
atataccccaatgcatccctgctgatccagaacgtcacccagaatgacacaggattctac
accctacaagtcataaagtcagatcttgtgaatgaagaagcaactggacagttccatgta
tacccggagctgcccaagccctccatctccagcaacaactccaaccctgtggaggacaag
gatgctgtggccttcacctgtgaacctgagactcaggacacaacctacctgtggtggata
aacaatcagagcctcccggtcagtcccaggctgcagctgtccaatggcaacaggaccctc
actctactcagtgtcacaaggaatgacacaggaccctatgagtgtgaaatacagaaccca
gtgagtgcgaaccgcagtgacccagtcaccttgaatgtcacctacacctattaccgtcca
ggggcaaacctcagcctctcctgctatgcagcctctaacccacctgcacagtactcctgg
cttatcaatggaacattccagcaaagcacacaagagctctttatccctaacatcactgtg
aataatagtggatcctatacctgccacgccaataactcagtcactggctgcaacaggacc
acagtcaagacgatcatagtcactgagctaagtccagtagtagcaaagccccaaatcaaa
gccagcaagaccacagtcacaggagataaggactctgtgaacctgacctgctccacaaat
gacactggaatctccatccgttggttcttcaaaaaccagagtctcccgtcctcggagagg
atgaagctgtcccagggcaacaccaccctcagcataaaccctgtcaagagggaggatgct
gggacgtattggtgtgaggtcttcaacccaatcagtaagaaccaaagcgaccccatcatg
ctgaacgtaaactataatgctctaccacaagaaaatggcctctcacctggggccattgct
ggcattgtgattggagtagtggccctggttgctctgatagcagtagccctggcatgtttt
ctgcatttcgggaagaccggcagggcaagcgaccagcgtgatctcacagagcacaaaccc
tcagtctccaaccacactcaggaccactccaatgacccacctaacaaggacaccattgga
gacaatggttcttttatgaaggctttgactggaatggcatgccagagtaaagaaaaagct
cctgaattgcccaaaccaaagaaaaacagatgtttcatgtgcagaaagaaagttggtctt
acaggtttgactgccgatgtggaaatttgttttgtggacttcaccgttaactctgacaag
cacaactgtccgtatgattacaaagcagaagctgcagcaaaaatcagaaaagagaatcca
gttgttgtggctgaaaaaattcagagaatataa

>gi568815579r:42483249_42694828|GENSCAN_predicted_peptide_2|536_aa
MGPISAPSCRWRIPWQGLLLTASLFTFWNPPTTAQLTIEAVPSNAAEGKEVLLLVHNLPQ
DPRGYNWYKGETVDANRRIIGYVISNQQITPGPAYSNRETIYPNASLLMRNVTRNDTGSY
TLQVIKLNLMSEEVTGQFSVHHHSLDSALSLEVTDSTETPKPSISSNNSNPVEDKDAVAF
TCEPETQNTTYLWWVNGQSLPVSPRLQLSNGNRTLTLLSVTRNDVGPYECEIQNPASANF
SDPVTLNVLYGPDAPTISPSDTYYHAGVNLNLSCHAASNPPSQYSWSVNGTFQQYTQKLF
IPNITTKNSGSYACHTTNSATGRNRTTVRMITVSGTLVELEDIMLSKLTQKQKNKYCMFS
LIKKNAPGLPVGAFTGIVTRVLVGVAPVATLACFLLLVRTGRPRYPTPGQPLPSMRHHSR
QHMDGKRLREKLPVLVRSEAAIKNCWRLGAHISLSTCLTAKAISHLLPSTLPNPVHGGDG
PSWNTHHSLSAFSGNHRFYRGHLWNQNSWKDEQRELLRTSWGSWHLVHHMDIINST

>gi568815579r:42483249_42694828|GENSCAN_predicted_CDS_2|1611_bp
atggggcccatctcagccccttcctgcagatggcgcatcccctggcaggggctcctgctc
acagcctcacttttcaccttctggaacccgcccaccactgctcagctcactattgaagct
gtgccatccaatgctgcagaggggaaggaggttcttctacttgtccacaatctgccccag
gaccctcgtggctacaactggtacaaaggggaaacagtggatgccaaccgtcgaattata
ggatatgtaatatcaaatcaacagattaccccagggcctgcatacagcaatcgagagaca
atataccccaatgcatccctgctgatgcggaacgtcaccagaaatgacacaggatcctac
accctacaagtcataaagctaaatcttatgagtgaagaagtaactggccagttcagcgta
catcatcattccttggactctgctctatctttagaggtcactgactcaacggagactccc
aagccctccatctccagcaacaactccaaccccgtggaggacaaggatgctgtggccttc
acctgtgaacctgagactcagaacacaacctacctgtggtgggtaaatggtcagagtctc
ccggtcagtcccaggctgcagctgtccaatggcaacaggaccctcactctactcagtgtc
acaaggaatgacgtaggaccctatgaatgtgaaatacagaacccagcgagtgcaaacttc
agtgacccagtcaccctgaatgtcctctatggcccagatgcccccaccatttccccttca
gacacctattaccatgcaggggtaaatctcaacctctcctgccatgcggcctctaatcca
ccctcacagtattcttggtctgtcaatggcacattccagcaatacacacaaaagctcttt
atccccaacatcactacaaagaacagcggatcctatgcctgccacaccactaactcagcc
actggccgcaacaggaccacagtcaggatgatcacagtctctggaacattggtggagcta
gaggacattatgctcagcaaactaacgcagaaacagaaaaacaaatactgcatgttctca
cttataaaaaaaaatgccccaggccttcctgtgggggccttcactggcatcgtgaccagg
gttctggtcggggtggcaccggtggccaccctggcatgtttcctgctcctcgtcaggact
ggaaggccccgctacccgaccccaggacagccgctcccatctatgaggcatcacagcagg
cagcacatggatggaaagagactgcgggaaaagctgcctgtattagtccgttccgaagct
gctataaagaactgctggagactgggagcccacatcagcctgtccacctgccttacagcc
aaagccatcagccacttgctcccttccaccctccccaaccctgtacatggaggtgacggc
ccctcctggaacacccaccactcactgtcagccttcagtggtaatcacaggttctacagg
ggtcacctgtggaaccagaactcttggaaggacgagcagagggagctgctcaggacatct
tggggctcctggcatctggtccaccacatggacataatcaatagcacttag

>gi568815579r:42483249_42694828|GENSCAN_predicted_peptide_3|370_aa
MKASLFTFWNPPTTAQVTVEVLPSNAVEEKEVVLLVYNLPQDILGHNCGQETVYPKARLE
IWNIALNDSGSYTVQILKADLMTEKVTAQISVHPKLSKPFVTISNSNPVENEDTAALTCE
TEIQNTTYLWWVNGQSLPVSPRLKLSNDNRTLTLPRVTRKDAGTYECEIRNLYLLFLCSP
GCQPKSTWPEARPLSPSQVQVQRPLLLGTQAGHDFLPQANLDGPDDPNISPSYSYYHPGE
NLNLSCNTASNPPPQYSWQINGKFQKSAQELFISKITKKNSGIYICFVRNSATDSRCFTI
KKITVTGISVQGSEEMAEASEPKDGERGSNPGAAPWNESRWGHTENVVQEGIPRNGQERS
RGHRLCGSAA

>gi568815579r:42483249_42694828|GENSCAN_predicted_CDS_3|1113_bp
atgaaagcctcacttttcaccttctggaacccacccaccactgcccaagttacagttgaa
gttctgccatctaatgcggtagaggagaaggaggttgttctacttgtctacaatctgccc
caggatatacttggccacaactgtggccaagagacagtataccccaaagcacgcctggag
atctggaacatcgccctgaatgactcaggatcctacaccgtgcaaattttaaaggcagat
cttatgactgaaaaagtaactgcacagatcagcgtacacccgaaactatccaagcccttc
gtcaccatcagcaactccaaccccgtggagaatgaggatactgcggccttaacctgtgaa
actgagattcagaacacaacttacctgtggtgggtaaatggtcagagcctcccggtcagt
cccaggctgaagctgtccaatgacaacaggaccctcactctacccagagtcacaaggaag
gacgcaggaacatatgaatgtgaaatccggaatctatatcttctgttcctctgtagccca
ggctgccagcccaaatccacatggccagaggccaggcctctcagtccctctcaggtccaa
gtacagagacctttactcctgggcacccaggctggccatgacttcctgccccaggcaaac
ctggatggcccagacgaccccaacatttccccctcttactcctattaccatccaggggaa
aacctcaacctctcctgcaacacagcctctaacccacccccacagtattcttggcagatt
aatgggaagttccaaaaatcagcacaagagctctttatctccaaaatcactaaaaagaat
agtggaatctacatctgtttcgttcgcaactcagccactgacagcaggtgtttcacgatc
aagaagatcacagtcactgggatcagtgttcagggctcagaagaaatggcagaggccagt
gagcccaaagatggtgagaggggcagcaacccaggggcagctccctggaacgagagcagg
tggggccacacggagaacgtggtgcaggaaggaatacccaggaatgggcaggagaggagt
cgaggacacaggctctgtgggtctgcagcctag

>gi568815579r:42483249_42694828|GENSCAN_predicted_peptide_4|353_aa
MEIQQESSICKKALTRTKSADTSTLDYPASRTVSFSINLAGSSCPQQHQRPHEKSSSRGS
ACMGPMRQPQCQSLDGSDQETINFYACLLIHNVTQNDTGFYTLEVIKLNLMNEEITIQFS
LRPELSKPSVTSNNSNPMEDKDAVALTCEPETQGTTYLWWVNGQSLPASSRLQLSNNNRT
LTVLNVTRNYTGPYKCEIWNRVSVSHSYPVTLDVLCSPGCQPKLTWPESRPLSPSQVQEQ
RLSALDIKAVHDCLPQANFEGHCGLSTDQEYSWLINEKLQQYTQELFIPKITAKNSGVYA
CFVRNSATDLSFSTYKEGVTVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKS

>gi568815579r:42483249_42694828|GENSCAN_predicted_CDS_4|1062_bp
atggagatacagcaagaaagcagcatctgcaagaaagccctcaccaggaccaaatcagct
gacacctcaaccttggactacccagcttcccgaactgtgagtttctccatcaacttagct
ggcagctcctgtccccagcagcatcagaggccccatgaaaagagctccagcaggggctca
gcctgcatgggtcccatgcggcagcctcagtgtcagagcctggatggcagtgatcaggag
acgataaacttctatgcatgcctgctgatccataacgtgacccaaaatgacacaggattc
tacacccttgaagttataaagctaaatcttatgaatgaagaaataaccatacaattcagc
ttacgcccagagctgtccaagccctccgtcaccagcaacaactccaaccccatggaggac
aaggatgctgtggccttaacttgtgaacctgagacccagggcacaacctacctgtggtgg
gtaaatggtcagagcctcccggccagttccaggctgcagctgtccaataacaacaggacc
ctcactgtactcaatgtcacaaggaattacacaggaccctataagtgtgaaatctggaat
cgagtgagtgtcagtcacagttaccctgtcaccctggatgtcctctgtagcccaggctgc
caacccaaattgacatggccagaatccaggcctctcagtccttctcaggtccaagaacag
agactctcagccctggatatcaaagctgtccatgactgcctgccccaggcaaattttgag
ggacactgtggcctttctacagaccaggagtattcttggcttatcaatgaaaagctccag
caatacacacaagagctctttatccccaaaatcactgcaaagaatagcggggtctatgct
tgttttgtccgtaactcagccactgacctcagtttttctacatacaaggaaggagtcacg
gtggctaagaaggatgtccacatgcctaagcacccggagctggcagacaagaatgtgccc
aaccttcatgtcatgaaggccatgcagtctctcaagtcctga

>gi568815579r:42483249_42694828|GENSCAN_predicted_peptide_5|170_aa
MDKFLDTYTLPSLNQEEVESLKRPITSSEIEAVVNSLLSKKSPGPDGFTAKFCQRYKEEL
IPFLLKLFQAIEKQGLLPNSFYEASIILIPKPGRDTTKKENFRPISLMNIDAKILNKILP
NRIQQHIKKLIHHDQVGFIPGIQGSFNICKSIHIIHYINKTHDKNHRLSQ

>gi568815579r:42483249_42694828|GENSCAN_predicted_CDS_5|513_bp
atggataaattcctggacacatacaccctcccaagtctaaaccaggaagaagtcgaatcc
ctgaagagaccaataacaagttctgaaattgaggcagtagttaatagcctactaagcaaa
aaaagcccaggaccagatggattcacagccaaattctgccagaggtacaaagaggagctg
ataccattccttctgaaactattccaagcaatagaaaaacagggactcctccctaactca
ttttatgaggccagcatcatcctgataccaaaacctggcagagacacaaccaaaaaagaa
aatttcaggccaatatccctgatgaacatcgatgcaaaaatcctcaataaaatattgcca
aaccgaatccagcagcacatcaaaaagcttatccaccacgatcaagtcggcttcatccct
gggatacaaggctcattcaacatatgcaaatcaatacacataatccattacataaacaaa
acccatgacaagaaccacagattatctcaatag