GENSCAN 1.0	Date run:  7-Nov-116	Time: 00:28:51

Sequence gi568815578r:33308510_33543620 : 235111 bp : 47.50% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   6583   6619   37  0  1   85  106    47 0.904   4.56
 1.02 Intr +   8345   8466  122  0  2  106   99    43 0.517   7.41
 1.03 Intr +   9505   9690  186  0  0  -62   67   205 0.406   3.29
 1.04 Intr +  11413  11594  182  0  2   65   83   103 0.663   6.17
 1.05 Intr +  13261  13347   87  1  0   67   36   117 0.654   3.49
 1.06 Intr +  15414  15447   34  0  1   57   79    54 0.681  -0.37
 1.07 Intr +  16139  16192   54  1  0   86   59    40 0.431   0.08
 1.08 Intr +  16569  16592   24  2  0  109  105    -8 0.600   1.22
 1.09 Intr +  17193  17345  153  2  0   75   92   140 0.991  13.37
 1.10 Intr +  19909  20098  190  0  1   31   49   136 0.631   3.16
 1.11 Intr +  24656  24706   51  0  0   82   90    47 0.254   3.18
 1.12 Intr +  37053  37162  110  1  2   70  116    13 0.003   2.30
 1.13 Intr +  39211  39466  256  0  1   58   93    73 0.008   1.82
 1.14 Intr +  40819  41090  272  2  2   56   93    87 0.456   3.26
 1.15 Intr +  41169  41311  143  2  2   54   98   222 0.560  18.95
 1.16 Intr +  41657  41758  102  2  0  120   96    96 0.898  12.89
 1.17 Intr +  41803  41861   59  1  2   55   68    18 0.274  -4.97
 1.18 Intr +  44187  44275   89  1  2   77  110    95 0.527  10.29
 1.19 Term +  45440  45565  126  1  0   75   48    67 0.545  -0.32
 1.20 PlyA +  47011  47016    6                               1.05

 2.11 PlyA -  49257  49252    6                               1.05
 2.10 Term -  50486  50310  177  2  0  101   38    19 0.384  -4.11
 2.09 Intr -  51982  51842  141  1  0  112  100    47 0.927   8.85
 2.08 Intr -  58499  58350  150  2  0   93   60   143 0.984  12.36
 2.07 Intr -  62120  61990  131  0  2  108   99    81 0.981  11.61
 2.06 Intr -  64188  64133   56  2  2   99   88    -8 0.696  -1.08
 2.05 Intr -  71182  70941  242  1  2   41   71   189 0.565   8.85
 2.04 Intr -  77261  77141  121  1  1  112   72    51 0.965   6.40
 2.03 Intr -  79024  78814  211  2  1   95   56   322 0.921  27.67
 2.02 Intr -  83733  83633  101  2  2   94   38    72 0.693   2.55
 2.01 Init -  93049  92919  131  1  2   71   83   114 0.868   9.00
 2.00 Prom -  98443  98404   40                              -8.46

 3.10 PlyA -  99487  99482    6                               1.05
 3.09 Term - 100090  99998   93  1  0   88   43    94 0.863   2.73
 3.08 Intr - 100379 100192  188  0  2   82   78   245 0.958  22.31
 3.07 Intr - 101822 101626  197  1  2   89   69   275 0.910  24.76
 3.06 Intr - 103917 103787  131  0  2  124   80   122 0.999  14.49
 3.05 Intr - 104273 104066  208  1  1  106   82   252 0.999  25.48
 3.04 Intr - 109322 109210  113  2  2   91  110    72 0.896   8.88
 3.03 Intr - 127294 127191  104  2  2   57   77     6 0.038  -3.71
 3.02 Intr - 130517 130332  186  0  0   78   98   230 0.968  22.66
 3.01 Init - 135111 134802  310  0  1  106   86   666 0.968  63.68
 3.00 Prom - 159157 159118   40                              -1.46

 4.05 PlyA - 163014 163009    6                               1.05
 4.04 Term - 181838 181576  263  0  2    7   47   166 0.015   0.09
 4.03 Intr - 201623 201540   84  0  0   95   75    45 0.057   3.69
 4.02 Intr - 213116 213033   84  0  0   84   76    31 0.154   1.29
 4.01 Init - 222936 222888   49  0  1   65   65    44 0.249   0.91
 4.00 Prom - 229046 229007   40                              -1.66

 5.02 PlyA - 229614 229609    6                               1.05
 5.01 Term - 230693 230593  101  0  2  115   44    51 0.382   1.69

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init +  39226  39466  241  0  1   85   93   134 0.981   9.66
S.002 Init - 111153 111073   81  0  0   78   98     2 0.854   1.17


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815578r:33308510_33543620|GENSCAN_predicted_peptide_1|758_aa
MPALPLTTCVTLGPGQENAAALDVTACWTLLPQAQGKAQHLLCLQRTRISGKQPHTEAGL
ASSDSSDLFSEHYTLDCMLSLPVTGARSKGVAVLDHLPFVGKRLSKKSSGLDLSQQIRIL
TPHRVTEAWPGHTNILHASHRLVIEDAKRPEITLQILSDSLLQVTLRCKLYLSLQEIPWL
KVIKSIHIGVRLEQTGNTTKVAFEDKEFHVDPQDSTAADLIQLLSRIELEPRPRVSKLRL
SKASSQSRGSIQLTINTPDPPTVRLDGHTATIIQPGLLVLLGLSITSSVSVSWSNVLSTA
EPQIIFKRHQKAELSEISPPSLDIRNKPKLFQTPLPWFGLPQKQTLSWGSEGGFGGGQGS
EQKKIPPQSQNVHDRHWAIKLGCSSVINSLAAGAEGKAASENLDPSTPGKVSATTMLTLW
ALAVMLAVEEALGQLELADRPSLIPTLPVRFPPGLLPGSLSVSKVPLTGKYPARTKGGRC
PPVTKYFISDSKLEDYMNATLPLQIEKILKCEKVNLAGLLGTVLSTVSDLDLLSLLDLTS
PLDILGGASLSGILGEGSGGKSSKLPLLSELTGAVSGLLPQGTEGLRPLKDVTDKVQDLK
ESAQGVLNSTLPSGISDALPDLLKNADLEQLLLGLQVEKVTVESMKSTTTGDGIHVQATT
TAFIGGKGVVTSSEQRPGRDNREDSSMDTKNVSVSLILSYAMLKVIITHTAKQSSVQRNN
LDARITKLTYSHRPDIKSKPATGLTSPRTVGALSPGKR

>gi568815578r:33308510_33543620|GENSCAN_predicted_CDS_1|2277_bp
atgccggctctgccactcactacctgtgtcaccttgggtcctggccaagagaatgctgct
gctctggatgtcactgcttgctggacgctgctgccccaggcccaggggaaggcccagcac
ctactctgccttcagaggacaagaatcagtgggaaacagccccacactgaagcggggctt
gcatcctcggacagttcagacctgttctcagagcactacaccctggactgcatgctcagc
ctgcctgtgacaggggccaggagcaaaggtgttgctgtcctggaccacctgccctttgta
ggcaaacgcctctccaagaagagcagtgggctggacctgtcgcagcagatccggatactc
acaccccacagagtcacagaggcctggccaggccacaccaacatcctccatgcctctcac
aggttggtcatagaagacgccaaaagacctgagatcaccctgcaaatcctaagtgatagc
ctgctgcaggtcacgttgcgctgcaaactgtacctctcactccaggagatcccgtggctc
aaagtcatcaagagcattcacattggagtacggctggaacagacagggaataccaccaag
gtggctttcgaggacaaggagttccacgtggacccccaggactccacagctgcagacctc
attcagctattgtcacggattgagctggagcccaggcccagggtgagcaaactgaggctc
agcaaggcttccagtcagtccagagggagcatacaactgaccatcaacacccctgatcct
cccacggtccgccttgacggccacacggccaccatcatccagccgggcttgctagtgcta
ctggggctcagcatcacctcctctgtctcagtttcctggtcgaatgttctcagcacagca
gaaccgcagattatctttaagagacaccagaaagctgaactttctgagatttcaccccca
tctttagatatccgcaacaaacctaaactcttccaaacaccattgccttggtttgggctc
cctcagaagcagactctgagctggggaagtgaaggtggcttcgggggagggcagggcagt
gaacagaaaaagatcccgccccagagtcaaaacgtgcacgacagacattgggctataaaa
ttgggatgcagctctgtcatcaacagtctggcggcaggagcagaaggaaaggcagcttcc
gaaaacttggacccatccaccccaggcaaggtatcagccaccacgatgctgactctctgg
gccctggctgtcatgttggcggtcgaggaagcacttggccagctggagctcgcagatagg
ccttccctaatacccactttgcctgtccgttttccacctggattgctccctggaagtctg
tcagtctcaaaagtccctctaaccggaaaatacccagcgaggaccaaaggaggcaggtgt
ccacccgtcaccaagtacttcatatctgacagcaaactcgaagactatatgaatgccacc
ttgcccctgcagattgagaagattctgaagtgtgagaaggttaacttggctggtttgctt
gggaccgtattatccacagtgagcgacttggacctgctgtctctattagacctcacttca
ccccttgatatacttggaggtgccagcctcagtggtatcctaggtgagggaagtggcggc
aagtcctcgaaacttccattgctctcagaactcactggtgctgtcagtggtctgctaccc
caggggacggagggtctgcggcctctgaaggatgtgaccgacaaagtccaagacctcaaa
gagtctgctcagggcgtgctgaacagcaccctgccctcaggcatcagcgatgcactccca
gacctgctgaaaaatgctgacctggaacagctcttgctgggattacaggttgaaaaagta
actgtggagagcatgaagtcaaccacgacaggcgatgggatccatgtccaagccacgact
acggccttcataggtggaaaaggggttgtaacatccagtgagcaaagaccaggtagagac
aacagagaggacagcagcatggacactaaaaatgtcagcgtttccctaattctgtcctac
gcgatgctgaaggtcatcatcactcacactgccaagcagagctctgtgcagagaaataac
ctggatgcaagaatcaccaaactaacctactcccaccggccagacataaaatctaagcca
gctactgggttaacatcaccaaggacggtgggagctttgtcaccgggcaaacggtga

>gi568815578r:33308510_33543620|GENSCAN_predicted_peptide_2|486_aa
MTRPEVAAERKSLVYERSGGPVRGSDLPAELTLRDPGHCCCCGREKAEQTIWNRLHQLKA
LKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRDLPRLLAVAESGQQA
ANVLLSLDETYADVMPVQTSASATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPIASILE
EVKKLSEQGLKEVTLLGQNVNSFRDNSEVQFNSAVPTNLSRGFTTNYKTKQGGLRFAHLL
DQVSRVDPEMRIRFTSPHPKDFPDEVSVRYSREAYVELVHHIRESIPGVSLSSDFIAGFC
GETEEDHVQTVSLLREVQYNMGFLFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITIFR
EEATKANQTSVGCTQLVLVEGLSKRSATDLCGRNDGNLKVIFPDAEMEDVNNPGLRVRAQ
PGDYVLVKEGETLPATEETGHEGGDKLQGAKQLYVSGKRVSLKLLCEQLLQSLNLPKLRL
TLCLSL

>gi568815578r:33308510_33543620|GENSCAN_predicted_CDS_2|1461_bp
atgacccggcctgaagtagcggcggaacggaagtcgcttgtgtatgaacgcagcggcgga
cctgtgaggggatccgacttgccggcagaacttacgctgcgggaccccgggcactgttgc
tgctgcgggagggagaaggctgagcagaccatctggaaccgtttacatcagcttaaagcc
ttgaagacaaggcggccccgctcccgggttcctctgaggattggaattctaggctgcatg
gctgagaggttgaaggaggagattctcaacagagagaaaatggtagatattttggctggt
cctgatgcctaccgggaccttccccggctgctggctgttgctgagtcgggccagcaagct
gccaacgtgctgctctctctggacgagacctatgctgatgtcatgccagtccagacaagc
gccagtgccacgtctgcctttgtgtcaatcatgcgaggctgtgacaacatgtgtagctac
tgcattgttcctttcacccggggcagggagaggagtcggcctattgcctccattctagag
gaagtgaagaagctttctgagcaggggctgaaagaagtgacacttcttggtcagaatgtt
aatagttttcgggacaattcggaggtccagttcaacagtgcagtgcctaccaatctcagt
cgtggctttaccaccaactataaaaccaagcaaggaggacttcgttttgctcatcttctg
gatcaggtctccagagtagatcctgaaatgaggatccgttttacctctccccaccccaag
gattttcctgatgaggtgagcgtcagatattcaagagaagcttatgtggagttagttcac
catattagagaatctattccaggtgtgagcctcagcagcgatttcattgctggcttttgt
ggtgagacggaggaagatcacgtccagacagtctctttgctccgggaagttcagtacaac
atgggcttcctctttgcctacagcatgagacagaagacacgggcatatcataggctgaag
gatgatgtcccggaagaggtaaaattaaggcgtttggaggaactcatcactatcttccga
gaagaagcaacaaaagccaatcagacctctgtgggctgtacccagttggtgctagtggaa
gggctcagtaaacgctctgccactgacctgtgtggcaggaatgatggaaaccttaaggtg
atcttccctgatgcagagatggaggatgtcaataaccctgggctcagggtcagagcccag
cctggggactatgtgctggtgaaggaaggggagacattgcctgccactgaggaaacaggt
catgaaggtggagataagctgcaaggggcgaagcaactttatgtcagtggaaaacgtgtc
tctttaaagctgctatgtgaacagcttttacagtcattaaatttacctaaactaaggtta
accctttgtctctcactttga

>gi568815578r:33308510_33543620|GENSCAN_predicted_peptide_3|509_aa
MASGRRAPRTGLLELRAGAGSGAGGERWQRVLLSLAEDVLTVSPADGDPGPEPGAPREQE
PAQLNGAAEPGAGPPQLPEALLLQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKG
LAADQTEALFVGDAILSVNGEDLSSATHDEAVQVLKKTGKEVVLEGVNTQAFPLTHVMHS
SSLSQETFMDIYCVPAVYIKRQPSSPGPTPRNFSEAKHMSLKMAYVSKRCTPNDPEPRYL
EICSADGQDTLFLRAKDEASARSWATAIQAQVNTLTPRVKDELQALLAATSTAGSQDIKQ
IGWLTEQLPSGGTAPTLALLTEKELLLYLSLPETREALSRPARTAPLIATRLVHSGPSKG
SVPYDAELSFALRTGTRHGVDTHLFSVESPQELAAWTRQLVDGCHRAAEGVQEVSTACTW
NGRPCSLSVHIDKGFTLWAAEPGAARAVLLRQPFEKLQMSSDDGASLLFLDFGGAEGEIQ
LDLHSCPKTIVFIIHSFLSAKVTRLGLLA

>gi568815578r:33308510_33543620|GENSCAN_predicted_CDS_3|1530_bp
atggcgtccggcaggcgcgccccgcgcaccgggctgctggagctgcgcgccggggcgggc
tcgggggccggcggcgagcgatggcagcgggtgctgctgagtctggcggaggacgtgctg
accgtgagccccgccgacggcgaccctggtcccgagcccggcgctccgcgggagcaggag
cccgcgcagctcaacggcgccgcggagccgggcgccgggcccccgcagctgccagaggcg
ctactgctccagcggcgccgcgtgacggtgcgcaaggccgacgccggtgggctgggcatc
agcatcaaaggcggccgggagaacaagatgcctattctcatttccaagatcttcaaggga
ttggcagctgaccagacagaggccctttttgtgggggatgccatcctgtctgtgaatggg
gaagacttgtcctctgctacccatgatgaggcggtgcaggtcctcaagaagacaggcaag
gaggtggtgctggagggagtgaatactcaagccttccctctaactcatgtcatgcattcc
tcctcactaagccaagagacattcatggacatctactgtgtgcctgctgtgtatattaag
cggcagccttcctcccctggccccacaccccggaacttcagcgaggccaaacacatgtcc
ttgaagatggcatatgtctcgaagaggtgcacccccaatgacccggagcccaggtatctg
gagatctgctcggcagatggtcaagacaccctcttcctgagggccaaggatgaggctagt
gcgaggtcgtgggcgactgccatccaagcccaggtcaatactctgacgccgcgggtcaag
gatgagctgcaggcactgttggcagccaccagcacagctgggagccaggacatcaagcag
attggctggctaactgagcagctgcccagtgggggcacagcccccaccctggccctgcta
actgaaaaggaactgctcctctacttgtctctccccgagacccgcgaggccctgagccgg
ccagcccgtactgccccactcatcgccaccagactggtgcactcaggcccctccaagggc
tcagtgccctacgatgcagagctctcttttgccctgcgcacgggcacgcgtcacggtgtg
gacactcacctgttcagcgtggagtcaccgcaggagctggctgcctggacccgccagctt
gtggatggctgtcaccgggccgccgagggtgtgcaggaggtgtctacagcctgcacgtgg
aatgggcgtccctgcagcctgtctgtgcacatcgacaagggcttcacactgtgggcggct
gagccaggtgcagcccgagctgtgctcctgcgacagcccttcgagaagctgcagatgtct
tcagatgacggtgccagtctccttttcctggattttggaggtgctgaaggcgagatccag
ctggacctgcactcgtgtcccaaaaccatagtcttcatcatccactccttcctgtcggcc
aaagtcacccgcctcgggctgttggcctag

>gi568815578r:33308510_33543620|GENSCAN_predicted_peptide_4|159_aa
MHFKILNTDEEDIQQQYGTAAVKVKHLDSMQFIRTMLAVDQASPGTWTQLETIILSKLSQ
GQKTKHRMFSLTGPHTPPSAARIHAPLTLEGGRSRDAYHRRAPPPRAARLYPRHGSLAGA
ARLDPRPGSLAGVAARSAAAELTRHHHRCCRRRRRRRRR

>gi568815578r:33308510_33543620|GENSCAN_predicted_CDS_4|480_bp
atgcatttcaaaatcctaaacacagatgaagaggatatacagcagcagtatggtacagct
gcagttaaagtaaaacacctggactccatgcagtttattagaacaatgttagctgtagat
caggcaagcccagggacatggacgcagctggaaaccatcattctgagcaaactatcacaa
ggacagaaaaccaaacaccgcatgttctcactcacaggccctcacacgcccccctcggcc
gcccgcattcacgccccacttacgctggaaggcggccgctccagggacgcctaccatcgc
cgagcgccgccgccgcgcgccgcccgcctctacccgcgacacgggtccctcgcaggcgcc
gcccgcctcgacccgcggcccgggtccctcgcaggcgtcgccgcgagatctgcagccgcc
gagctaaccagacaccaccaccgctgctgtcgccgtcgccgccgccgccgccgccgttag

>gi568815578r:33308510_33543620|GENSCAN_predicted_peptide_5|33_aa
XKQTGLTVKKLAQDYTDTKQQNGNSNQISEPQL

>gi568815578r:33308510_33543620|GENSCAN_predicted_CDS_5|102_bp
nataagcaaacaggcctaacagttaaaaaacttgcccaagattatacagacactaagcag
caaaatgggaattcaaaccaaatttccgaacctcaactctga