GENSCAN 1.0	Date run:  8-Nov-116	Time: 05:14:15

Sequence gi568815582r:54183689_54386050 : 202362 bp : 46.63% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.04 PlyA -     16     11    6                               1.05
 1.03 Term -  10229  10075  155  0  2  115   49   124 0.698   9.28
 1.02 Intr -  20663  20556  108  0  0   72  100    46 0.519   4.46
 1.01 Init -  23441  23333  109  2  1   49   78   109 0.601   6.38
 1.00 Prom -  27582  27543   40                              -3.66

 2.05 PlyA -  30279  30274    6                               1.05
 2.04 Term -  30525  30460   66  0  0   91   45    36 0.164  -2.46
 2.03 Intr -  33535  33428  108  1  0   75   81    47 0.183   3.18
 2.02 Intr -  37932  37830  103  2  1  107   40    79 0.407   5.18
 2.01 Init -  41566  41508   59  1  2   90   76    20 0.615   1.78
 2.00 Prom -  43740  43701   40                              -6.06

 3.03 PlyA -  44440  44435    6                               1.05
 3.02 Term -  44635  44469  167  2  2  101   44   123 0.930   7.28
 3.01 Init -  48339  48291   49  0  1   48  106    13 0.803   0.21
 3.00 Prom -  50067  50028   40                              -4.66

 4.00 Prom +  50877  50916   40                              -3.56
 4.01 Init +  56196  56314  119  2  2   79   74    77 0.363   5.07
 4.02 Intr +  67198  67261   64  1  1   82   89    18 0.130   0.02
 4.03 Intr +  73453  73539   87  0  0  105   29    79 0.173   3.87
 4.04 Intr +  74348  74495  148  1  1   62   47    88 0.151   1.91
 4.05 Intr +  81340  81529  190  2  1  126   78    47 0.123   6.14
 4.06 Intr +  86400  86649  250  0  1   64   30   117 0.117   0.94
 4.07 Term +  91692  91874  183  2  0   39   48   143 0.506   2.94
 4.08 PlyA +  91878  91883    6                               1.05

 5.08 PlyA -  93316  93311    6                               1.05
 5.07 Term - 100052  99998   55  1  1  118   32    48 0.430  -0.77
 5.06 Intr - 100624 100558   67  2  1   96   95    64 0.910   5.86
 5.05 Intr - 101925 100809 1117  0  1   67   62  1591 0.923 143.66
 5.04 Intr - 102347 102096  252  2  0   76   99   477 0.384  45.23
 5.03 Intr - 103797 103592  206  1  2   80   22    54 0.217  -3.08
 5.02 Intr - 104173 104065  109  1  1   76   86    74 0.344   5.86
 5.01 Init - 117345 117271   75  0  0   81   58    55 0.012   2.89
 5.00 Prom - 118468 118429   40                              -4.96

 6.00 Prom + 122178 122217   40                               0.04
 6.01 Init + 123540 123551   12  2  0  107   89    18 0.400   3.60
 6.02 Intr + 142964 143146  183  1  0   98   60    53 0.413   3.48
 6.03 Term + 146771 146836   66  1  0  127   42    47 0.610   1.94
 6.04 PlyA + 147780 147785    6                               1.05

 7.00 Prom + 149895 149934   40                              -4.76
 7.01 Init + 153155 153280  126  1  0   66   34   252 0.655  17.76
 7.02 Intr + 153296 153580  285  1  0 -222   75   835 0.715  48.74
 7.03 Intr + 159653 159731   79  1  1   76   52   110 0.422   5.32
 7.04 Intr + 172332 172375   44  1  2   41   97    66 0.007   0.76
 7.05 Intr + 186641 186809  169  1  1   71   72   114 0.085   7.62
 7.06 Term + 187133 187260  128  0  2   64   49    48 0.559  -3.06
 7.07 PlyA + 187723 187728    6                               1.05

 8.03 PlyA - 189240 189235    6                               1.05
 8.02 Term - 191657 191516  142  1  1   73   52   101 0.648   2.40
 8.01 Init - 200297 200281   17  2  2   83   98    32 0.681   3.39

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Sngl -  78465  78133  333  0  0   86   55   152 0.823   7.73


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815582r:54183689_54386050|GENSCAN_predicted_peptide_1|123_aa
MSSGAHQPKDYPLKSRHAQVPKSSSQLNADPLQAPGDQRHFPFSAKRPEHSLTNGHPPTP
GMRETVIIGCLQGAMGARSTQVFRGRFSRAQAPSRKKCALVTPSGRSGALQRERPEAEDQ
EEG

>gi568815582r:54183689_54386050|GENSCAN_predicted_CDS_1|372_bp
atgtcttctggggcccatcagcccaaggactatcccctgaaatccaggcatgcccaggtc
cctaaatcttcctcgcagctcaatgcagaccctctgcaggccccaggagatcaaaggcat
tttccattttctgccaagcgccccgagcactctttgaccaatggccaccccccgacccca
ggcatgagagaaactgtcattattggctgcttgcaaggtgccatgggcgcccggtccacg
caggtcttccgtggccgcttctctagggcccaggccccttccaggaagaagtgcgctctg
gtgacaccatcaggccgctcgggggcactgcagagggaaaggccggaagcagaggaccaa
gaggagggctga

>gi568815582r:54183689_54386050|GENSCAN_predicted_peptide_2|111_aa
MDELKKKEKIKINLDFTPQRVMDNGLVFALSDFSLKYSQVPPKDYRANFTRRFLHSSHLV
GKTFGRAWGDSCPPPMQRGTESQSGFPGGQKPYLATQWKVGLIIPFDSTRL

>gi568815582r:54183689_54386050|GENSCAN_predicted_CDS_2|336_bp
atggacgagctgaaaaaaaaagagaaaattaaaatcaaccttgatttcaccccacagagg
gtcatggacaatggtcttgtctttgctttgtctgatttctctctgaagtacagccaggta
cccccaaaagactacagagctaactttacaagacgcttcctgcattcctcacacttggtg
gggaagacatttggccgggcctggggagacagctgccctccaccaatgcaaagaggtact
gagtcacagtccggattccctggtggccagaaaccttatcttgccacccaatggaaagtg
ggcctcatcattccctttgacagcacccgattgtga

>gi568815582r:54183689_54386050|GENSCAN_predicted_peptide_3|71_aa
MQKHLGEDLIEPSISQMFLVLKPSDSWTGINIIGSPGSQAFELDISFPRSPTCTSRLWDF
SASMIAEANIL

>gi568815582r:54183689_54386050|GENSCAN_predicted_CDS_3|216_bp
atgcagaaacaccttggagaagatctcatagagcccagcatttcccaaatgttcctggtt
ctcaagccttcagactcctggactggcatcaacatcattggttcccctggttctcaggcc
tttgaactagacatcagctttcctaggtctcccacttgtactagcagattatgggacttt
tcagcttccatgattgcagaagccaatatcttatga

>gi568815582r:54183689_54386050|GENSCAN_predicted_peptide_4|346_aa
MGNPAARRGAYPSVDSTSVQVSNSRLMEGVMEDVRPLQLGCLMIKVYASQNKVIIGLGGS
SLHARKKTVDEKAEAQEEQSDFMVVTHKTGRGPSECILLDISRGAGGHHSNWSPSGEGPI
LVQNYENAPQIIPKYSGERDFSSWLSVDLPGNFRLNLQWANVFSKPVLINLWVGSLNGVQ
GEGKEKEAAPFTGGPFGCCWNMSSGSSVNEGQGWRVNEEKGECQAGSGQSMNPPGVSHIN
AILLPFATLHAIGVWICQPYVPKLLESGYGELYGTQQHPSSYQGHRGSHIEERRSRKKAS
LFPANVDGLSQQNFDVQLPPKPPSTRSEAEKESKEWTEIFVLSYTY

>gi568815582r:54183689_54386050|GENSCAN_predicted_CDS_4|1041_bp
atgggcaatccagctgcaagaagaggtgcatacccctctgtagacagcacatctgtgcag
gtgtctaacagccgcctcatggaaggagtcatggaagacgttaggcccctccagttggga
tgtcttatgataaaggtgtatgcatctcagaacaaagtgataataggacttggtggttcc
tcactccatgctagaaagaagactgtggatgagaaagctgaggcccaagaggaacaaagt
gactttatggttgtcacacataaaactgggcgtggccctagtgaatgcattctcctggac
atttcccgtggagccggcggccatcactccaactggtccccaagtggggagggccctata
ctggttcagaactatgagaatgcacctcaaattatcccaaagtactccggggagagagac
ttctcctcctggctcagtgtggatctaccaggaaacttcaggttaaatctacagtgggca
aatgtgttttccaaacctgttcttattaatctatgggtaggatccctgaatggagtgcag
ggagaaggaaaagagaaggaggcggcgcccttcacaggaggaccttttggttgctgctgg
aacatgagctccggttcaagtgtgaatgaaggacagggatggagggtcaatgaagagaag
ggggaatgtcaagctggctctgggcaaagtatgaatcccccaggagtgtcccatatcaat
gccatccttctgccctttgccacactccatgccattggggtctggatttgccaaccatat
gtgcccaagcttcttgaatcagggtacggagagctctatggtacccagcagcatcccagc
agctaccaaggccacaggggatcacacatcgaggagcgaagatctagaaagaaggcaagc
ctttttcctgctaatgtggatggcctctcacagcaaaactttgatgtgcaattaccccca
aagcctccttccaccaggagtgaagctgagaaggaatcaaaggagtggacagagatcttc
gtcctgtcctatacctactga

>gi568815582r:54183689_54386050|GENSCAN_predicted_peptide_5|626_aa
MGGPISSPGQTCKAPDDQKFAMSTSAWPACGSPPRPKALSPQPRQCWEFQCRYRLHALIR
EAAWGAGLLHRFVAAPYPSSAPGLPPFSPRSQPAIFSKGFAHGPGGGVKWLISGFGPAGL
GAASPPQGSELGYQYIRPLYPSERPGAAGGSGGSAGARGGLGAGASELNASGSLSNVLSS
VYGAPYAAAAAAAAAQGYGAFLPYAAELPIFPQLGAQYELKDSPGVQHPAAAAAFPHPHP
AFYPYGQYQFGDPSRPKNATRESTSTLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVS
TWFANARRRLKKENKMTWAPRSRTDEEGNAYGSEREEEDEEEDEEDGKRELELEEEELGG
EEEDTGGEGLADDDEDEEIDLENLDGAATEPELSLAGAARRDGDLGLGPISDSKNSDSED
SSEGLEDRPLPVLSLAPAPPPVAVASPSLPSPPVSLDPCAPAPAPASALQKPKIWSLAET
ATSPDNPRRSPPGAGGSPPGAAVAPSALQLSPAAAAAAAHRLVSAPLGKFPAWTNRPFPG
PPPGPRLHPLSLLGSAPPHLLGLPGAAGHPAAAAAFARPAEPEGGTDRCSALEVEKKLLK
TAFQPVPRRPQNHLDAALVLSALSSS

>gi568815582r:54183689_54386050|GENSCAN_predicted_CDS_5|1881_bp
atgggcgggcccattagctccccggggcagacttgcaaagctcctgatgatcagaagttt
gccatgtccacctctgcctggccggcttgtgggtcgccgccgcggcctaaagctctgagc
ccccagccgcggcaatgctgggaatttcaatgccgctatcgactgcacgccctaatccgt
gaagccgcctggggcgcgggcctgcttcaccgatttgtggcggctccctacccttccagt
gcccccgggctgccacccttcagcccccggagccagcccgccatttttagtaagggattc
gcacacggacccgggggcggcgttaagtggctaatctctgggtttggtcctgctgggttg
ggggctgcctcgcccccgcaaggcagcgagctgggataccaatacatccgcccgctttac
ccgtccgagcgcccgggggccgctggcggcagcggcggcagcgcgggggcccggggcggc
ctgggtgccggagcctcggagctgaacgcctcggggtccctgtccaacgtgctctcgtcc
gtgtacggggcgccctacgccgcggccgctgcggccgccgccgcccaaggctacggcgcc
ttcctgccctacgccgcggagctgcccatcttcccgcagctgggcgcgcagtatgagctg
aaggacagccccggggtgcagcatccggccgcggctgccgcgtttccgcacccgcacccc
gccttctacccgtatggccagtaccagttcggggacccgtcccgtcccaagaacgccacc
agggagagcaccagcacgctgaaggcctggctcaacgagcaccgcaagaacccctacccc
accaagggcgagaagatcatgctggccatcatcaccaagatgaccctcacccaggtgtcc
acctggttcgccaacgcgcgccggcgcctcaagaaggagaataagatgacttgggcgcct
cgcagccgcactgacgaggagggaaacgcttatgggagcgagcgcgaggaggaagacgaa
gaggaggacgaggaggacggcaaacgcgagctagagctggaggaggaggagctcgggggg
gaggaggaggacacggggggcgagggcctggctgacgacgacgaggacgaggagatcgat
ttggagaacttagacggcgcggccaccgagcctgagctgtccctggctggggcggcgcgc
agggatggcgacctaggcctgggacccatttcggactccaaaaatagcgactcggaagat
agctctgagggcttagaggaccggccactaccggtcctgagtctggctccagcgccacca
ccagtggccgtggcctcgccgtctctgccgtcgccccccgtgagcctggacccctgcgct
cccgcaccagcccccgcctccgccctgcagaagcccaagatctggtccctcgcggagact
gccacaagcccggacaacccgcgccgctcgcctcccggcgcgggggggtctccaccgggg
gcagcggtcgcgccttccgccctgcagctctctccggccgccgccgccgccgccgctcac
agactggtctcagcgccgctgggcaagttcccggcttggaccaaccggccgtttccaggc
ccaccgcccggcccccgcctgcacccgctctccctgctgggctctgcccctccgcacctg
ctgggacttcccggagccgcgggccacccggctgccgccgccgccttcgctcggccagcg
gagcccgaaggcggaacagatcgctgtagtgccttggaagtggagaaaaagttactcaag
acagctttccagcccgtgcccaggcggccccagaaccatctggacgccgccctggtctta
tcggctctctcctcatcctag

>gi568815582r:54183689_54386050|GENSCAN_predicted_peptide_6|86_aa
MAAVVLGLRKPPPSHATGVSTQSFQILGREGWRVKPAHTLLAMTSQRNKELRPSTCLEVE
EKWLQRWAVGLPVKDSGVSQAKIWGK

>gi568815582r:54183689_54386050|GENSCAN_predicted_CDS_6|261_bp
atggctgctgtggtcctggggctgaggaagcctcctccatctcatgccactggcgtctcc
acacaaagcttccagatcctgggaagagaaggctggagagtcaagccggctcatacctta
ctggccatgactagtcagagaaacaaggaattacgaccctccacgtgtctggaagtagaa
gagaagtggcttcagaggtgggctgtgggcttaccagtgaaggactctggagtcagccag
gccaagatttggggcaagtga

>gi568815582r:54183689_54386050|GENSCAN_predicted_peptide_7|276_aa
MKLFPSSSCHSSKGFGDMEEEEMEEEEEEEKAEEEEKEEEEEVEEEEEEEEEKEVEEEEK
VEVEEEEEVEQEEEKEVEEEEKVEVEEEEVEEEEEEVEEEEKEEEKEEDEEEEEKEEEKE
EDEEEEEKEGKKMEEEKHVAMSLVNAEPPSGAFTTVVYHIDLPGRFSPNIYSAIMLDQEH
PAGPMNGPWAKMMFKKGTDHLDDKWASGRCQNFQAAGTINGHMEAAASVMAERVAACSEV
HSFPSERRRAAWEEVLIVVSLHFTPQITNESHSGSV

>gi568815582r:54183689_54386050|GENSCAN_predicted_CDS_7|831_bp
atgaagcttttccccagcagcagctgccacagcagtaagggctttggggacatggaggag
gaggagatggaggaggaggaggaggaagagaaggcagaggaggaggagaaggaggaggag
gaagaggtagaggaggaggaggaagaggaagaggagaaggaagtagaggaggaagagaag
gtggaggtggaggaggaggaagaggtggagcaggaggaggagaaggaggtagaggaggag
gagaaggtggaagtggaggaggaggaggtggaggaagaggaggaggaggtggaggaggag
gagaaggaggaggagaaggaggaggacgaggaggaggaggagaaggaggaggagaaggag
gaggacgaggaggaggaggagaaggagggaaagaagatggaggaggagaagcatgtagct
atgtcccttgtaaacgcagagcctccttctggggccttcaccactgtcgtctaccacatc
gaccttccaggaaggttttccccgaacatctattctgctatcatgctggaccaggaacac
ccggcaggccccatgaatggaccttgggccaaaatgatgtttaagaaggggacggaccat
ttagatgacaaatgggcttcagggcgctgtcagaacttccaggcggcggggactattaac
ggtcacatggaggccgccgcatctgtgatggcagagcgggtcgccgcctgctcggaagta
cacagcttcccgtcagagcgccgccgagctgcctgggaggaggtattaattgttgtcagc
ctccatttcacaccccagataacaaacgagagccactctggcagtgtttaa

>gi568815582r:54183689_54386050|GENSCAN_predicted_peptide_8|52_aa
MAEDEGALAVLWPLMTPYCTLIANQGTRNDQAASLSPYSDDNGQSGQLAVLT

>gi568815582r:54183689_54386050|GENSCAN_predicted_CDS_8|159_bp
atggcagaagatgaaggagctttggcagttttatggcctttaatgaccccctattgtacc
ctgattgccaatcagggcacacgtaatgaccaagcagcatcacttagcccttattccgat
gacaatggccagagcggccagctcgctgttttgacatga