GENSCAN 1.0	Date run:  7-Nov-116	Time: 23:40:28

Sequence gi568815579r:47771458_47986257 : 214800 bp : 46.84% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   9407   9460   54  1  0   93   78   106 0.992   9.28
 1.02 Intr +   9651   9725   75  2  0   96   95    32 0.938   4.41
 1.03 Term +   9833   9913   81  1  0  137   38   187 0.999  16.29
 1.04 PlyA +  13203  13208    6                               1.05

 2.02 PlyA -  14605  14600    6                               1.05
 2.01 Sngl -  23445  23098  348  0  0   68   37   373 0.999  26.24
 2.00 Prom -  24439  24400   40                              -4.26

 3.04 PlyA -  24482  24477    6                               1.05
 3.03 Term -  26733  26575  159  0  0  102   43   117 0.446   6.54
 3.02 Intr -  32216  32047  170  0  2  126   41   251 0.629  23.87
 3.01 Init -  47647  47515  133  1  1   78   66   122 0.753   9.30
 3.00 Prom -  58563  58524   40                              -6.26

 4.00 Prom +  58630  58669   40                              -8.56
 4.01 Init +  62314  62344   31  0  1   49   61    50 0.456  -1.69
 4.02 Intr +  62952  63086  135  1  0  111   89   106 0.890  13.54
 4.03 Intr +  64786  64937  152  2  2   84   75   225 0.982  20.68
 4.04 Term +  67863  68510  648  2  0  127   44   372 0.999  30.78
 4.05 PlyA +  69670  69675    6                               1.05

 5.00 Prom +  75275  75314   40                              -6.96
 5.01 Init +  78383  78434   52  1  1   92   46    32 0.275   0.75
 5.02 Intr +  88656  88825  170  1  2  126   41   251 0.999  23.87
 5.03 Term +  89876  90055  180  1  0   43   50   200 0.611   9.31
 5.04 PlyA +  90924  90929    6                               1.05

 6.05 PlyA -  91112  91107    6                               1.05
 6.04 Term - 100110  99998  113  1  2  133   39   136 0.998  11.92
 6.03 Intr - 103377 103200  178  0  1  113   93   120 0.999  14.49
 6.02 Intr - 107673 107579   95  1  2   68   89   115 0.944   9.28
 6.01 Init - 114800 114665  136  2  1   73  110     0 0.425   1.00
 6.00 Prom - 116945 116906   40                              -5.76

 7.00 Prom + 129549 129588   40                              -5.16
 7.01 Init + 130610 130658   49  1  1   86   58    34 0.087  -0.69
 7.02 Intr + 131195 131255   61  0  1   80   73    45 0.048  -0.01
 7.03 Intr + 135215 135406  192  2  0   81   53    89 0.064   3.31
 7.04 Intr + 140591 140782  192  2  0   89   43   112 0.237   5.41
 7.05 Intr + 145964 146155  192  2  0   81   53   116 0.264   6.01
 7.06 Intr + 151315 151506  192  1  0   81   53    92 0.480   3.61
 7.07 Intr + 156359 156550  192  2  0   89   43   110 0.697   5.21
 7.08 Intr + 161717 161908  192  2  0   81   53    92 0.058   3.61
 7.09 Intr + 167072 167263  192  2  0   89   43   112 0.360   5.41
 7.10 Intr + 172458 172649  192  0  0   81   53    92 0.124   3.61
 7.11 Intr + 177829 178020  192  1  0   89   43   112 0.493   5.41
 7.12 Intr + 183217 183408  192  1  0   89   43   112 0.356   5.41
 7.13 Intr + 184101 184210  110  0  2   99   82    31 0.564   3.53
 7.14 Term + 185887 185927   41  2  2   91   43    55 0.544  -1.35
 7.15 PlyA + 185956 185961    6                               1.05

 8.04 PlyA - 187180 187175    6                               1.05
 8.03 Term - 205397 205255  143  0  2  132   45    45 0.980   2.69
 8.02 Intr - 206047 205916  132  2  0   25  113    75 0.933   4.32
 8.01 Intr - 208142 208113   30  0  0   89  111    -4 0.207   0.10

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815579r:47771458_47986257|GENSCAN_predicted_peptide_1|69_aa
YLQLKKKLEDEFPGRLDICGEGTPQATGFFEVMVAGKLIHSKKKGDGYVDTESKFLKLVA
AIKAALAQG

>gi568815579r:47771458_47986257|GENSCAN_predicted_CDS_1|210_bp
tatcttcagctcaagaagaagttagaagatgagttccccggccgcctggacatctgcggc
gagggaactccccaggccaccgggttctttgaagtgatggtagccgggaagttgattcac
tctaagaagaaaggcgatggctacgtggacacagaaagcaagtttctgaagttggtggcc
gccatcaaagccgccttggctcagggctaa

>gi568815579r:47771458_47986257|GENSCAN_predicted_peptide_2|115_aa
MLPKAKEAPASPKAQAKPKALKAKKAVLKAVHSHTEEKIRRSPTFRRPKTARLRREPKYP
QKSAPWRNKLGHSAIITFPPTTESAMKKTDDNNTLAFIIDVKAKEHQIKQAVKKL

>gi568815579r:47771458_47986257|GENSCAN_predicted_CDS_2|348_bp
atgctgccgaaagcgaaggaagctcctgcctctcctaaagcccaagccaaaccgaaggct
ttaaaggccaagaaagcagtgttgaaagccgtccacagccacacagaagagaagatccgc
aggtcacccaccttcaggcggcccaagacagcgcgactccggagggagcccaaatatcct
cagaagagcgccccctggagaaacaagcttggccactctgcgatcatcacgtttccgccg
accactgagtccgccatgaagaagacagacgacaacaacacacttgccttcattatagat
gttaaagccaaggagcaccagatcaaacaggctgtgaagaagctctga

>gi568815579r:47771458_47986257|GENSCAN_predicted_peptide_3|153_aa
MEYYAAIKKDEFMSYAGTWMKLETIILSKLSQGQKTKHRMLSLIGPPLALDPPRRQRQER
TVYTESQQKVLEFYFQKDQYPNYDQRLNLAEMLSLREQQLQSPVRRHLQNLSRVTEELKG
RWDILVDDVKTLLKPVLAPSHASLLAVRLQLQQ

>gi568815579r:47771458_47986257|GENSCAN_predicted_CDS_3|462_bp
atggaatactatgcagccataaaaaaggatgagttcatgtcctatgcagggacatggatg
aagctggaaaccatcattctgagcaaactatcacaaggacagaaaaccaaacaccgcatg
ctctcgctcataggccctcccctggccctggaccctccaaggagacagcggcaggagcgc
acggtctacactgaaagccagcagaaagtgctagaattttactttcagaaggaccagtac
ccgaactacgaccagcgactgaatctggcggagatgctcagcctcagggagcaacagctg
cagagcccggtgaggcggcatctgcagaatctcagccgggtcacagaagagttgaagggg
agatgggacatattggtggatgatgtcaaaacccttctcaagcccgtgctggcaccttct
catgcctccttactggccgtgagacttcagttacagcagtag

>gi568815579r:47771458_47986257|GENSCAN_predicted_peptide_4|321_aa
MVKKEGILDEGPLTWASVSPKIMMAYMNPGPHYSVNALALSGPSVDLMHQAVPYPSAPRK
QRRERTTFTRSQLEELEALFAKTQYPDVYAREEVALKINLPESRVQVWFKNRRAKCRQQR
QQQKQQQQPPGGQAKARPAKRKAGTSPRPSTDVCPDPLGISDSYSPPLPGPSGSPTTAVA
TVSIWSPASESPLPEAQRAGLVASGPSLTSAPYAMTYAPASAFCSSPSAYGSPSSYFSGL
DPYLSPMVPQLGGPALSPLSGPSVGPSLAQSPTSLSGQSYGAYSPVDSLEFKDPTGTWKF
TYNPMDPLDYKDQSAWKFQIL

>gi568815579r:47771458_47986257|GENSCAN_predicted_CDS_4|966_bp
atggtcaagaaagaagggatcttggatgagggccccctgacttgggcctcagtgtccccg
aagatcatgatggcgtatatgaacccggggccccactattctgtcaacgccttggcccta
agtggccccagtgtggatctgatgcaccaggctgtgccctacccaagcgcccccaggaag
cagcggcgggagcgcaccaccttcacccggagccaactggaggagctggaggcactgttt
gccaagacccagtacccagacgtctatgcccgtgaggaggtggctctgaagatcaatctg
cctgagtccagggttcaggtttggttcaagaaccggagggctaaatgcaggcagcagcga
cagcagcagaaacagcagcagcagcccccagggggccaggccaaggcccggcctgccaag
aggaaggcgggcacgtccccaagaccctccacagatgtgtgtccagaccctctgggcatc
tcagattcctacagtccccctctgcccggcccctcaggctccccaaccacggcagtggcc
actgtgtccatctggagcccagcctcagagtcccctttgcctgaggcgcagcgggctggg
ctggtggcctcagggccgtctctgacctccgccccctatgccatgacctacgccccggcc
tccgctttctgctcttccccctccgcctatgggtctccgagctcctatttcagcggccta
gacccctacctttctcccatggtgccccagctagggggcccggctcttagccccctctct
ggcccctccgtgggaccttccctggcccagtcccccacctccctatcaggccagagctat
ggcgcctacagccccgtggatagcttggaattcaaggaccccacgggcacctggaaattc
acctacaatcccatggaccctctggactacaaggatcagagtgcctggaagtttcagatc
ttgtag

>gi568815579r:47771458_47986257|GENSCAN_predicted_peptide_5|133_aa
MGIQLLTCTWGAGKDNDCPPLALDPPRRQRQERTVYTESQQKVLEFYFQKDQYPNYDQRL
NLAEMLSLREQQLQSPYASNLSPDTQLYPDFTKLLPLLDRFEESSLSTTTSQYKEEDGFV
DKNHSVPRSLLDL

>gi568815579r:47771458_47986257|GENSCAN_predicted_CDS_5|402_bp
atgggaatccagctcctgacatgcacctggggcgctgggaaagacaatgactgccctccc
ctggccctggaccctccaaggagacagcggcaggagcgcacggtctacactgaaagccag
cagaaagtgctagaattttactttcagaaggaccagtacccgaactacgaccagcgactg
aatctggcggagatgctcagcctcagggagcaacagctgcagagcccctatgcctccaac
ttgtcgccagacacccagttataccctgacttcaccaagctgctcccgctcctagaccgg
ttcgaggaatcctcactctccaccacgacgtctcagtacaaagaggaggatggcttcgtg
gacaaaaatcactcagtccccaggtcattactggatttatag

>gi568815579r:47771458_47986257|GENSCAN_predicted_peptide_6|173_aa
MSDDFLWFEGIAFPTMGFRSETLRKVRDEFVIRDEDVIILTYPKSVLYGSWFDHIHGWMP
MREEKNFLLLSYEELKQDTGRTIEKICQFLGKTLEPEELNLILKNSSFQSMKENKMSNYS
LLSVDYVVDKAQLLRKGVSGDWKNHFTVAQAEDFDKLFQEKMADLPRELFPWE

>gi568815579r:47771458_47986257|GENSCAN_predicted_CDS_6|522_bp
atgtcggacgatttcttatggtttgaaggcatagctttccctactatgggtttcagatcc
gaaaccttaagaaaagtacgtgatgagttcgtgataagggatgaagatgtaataatattg
acttaccccaaatcagtgctatatgggtcatggtttgaccacattcatggctggatgccc
atgagagaggagaaaaacttcctgttactgagttatgaggagctgaaacaggacacagga
agaaccatagagaagatctgtcaattcctgggaaagacgttagaacccgaagaactgaac
ttaattctcaagaacagctcctttcagagcatgaaagaaaacaagatgtccaattattcc
ctcctgagtgttgattatgtagtggacaaagcacaacttctgagaaaaggtgtatctggg
gactggaaaaatcacttcacagtggcccaagctgaagactttgataaattgttccaagag
aagatggcagatcttcctcgagagctgttcccatgggaataa

>gi568815579r:47771458_47986257|GENSCAN_predicted_peptide_7|726_aa
MGFHHVGQAGLQLLTSGSSILPEDLQNLQIFLLEKPHHTGLLTVPVAAGMCPHWASVLAV
PTARTPSCTICTVQYGRLWPHMATEQLNMAGPNQHFQDVVCHTGLLTVPVAAGMCPHRAS
VLAVPTARTPSCTICTVQYGRLWPHMATEQLNMAGPNQDFQDVVCHTGLLTVPVAAGMCP
HWASVLAVPTARTPSCTICTVQYGRLWPHMATEQLNMAGPNQDFQDVVCHTGLLTVPVAA
GMCPHWASVLAVPTARTPSCTICTVQYGRLWPHMATEQLNMAGPNQHFQDVVCHTGLLTV
PVEAGMCPHRASVLAVPTARTPSCTICTVQYGRLWPHMATEQLNMAGPNQDFQDVVCHTG
LLTVPVAAGMCPHWASVLAVPTARTPSCTICTVQYGRLWPHMATEQLNMAGPNQHFQDVV
CHTGLLTVPVAAGMCPHRASVLAVPTARTPSCTICTVQYGRLWPHMATEQLNMAGPNQDF
QDVVCHTGLLTVPVAAGMCPHWASVLAVPTARTPSCTICTVQYGRLWPHMATEQLNMAGP
NQHFQDVVCHTGLLTVPVAAGMCPHRASVLAVPTARTPSCTICTVQYGRLWPHMATEQLN
MAGPNQDFQDVVCHTGLLTVPVAAGMCPHRASVLAVPTARTPSCTICTVQYGRLWPHMAT
EQLNMAGPNQDFQDVVWGRHGTQGPHWPWGLGDVRGEPLVIGSLTLRKIKGPKVSFSTPY
LDKDKK

>gi568815579r:47771458_47986257|GENSCAN_predicted_CDS_7|2181_bp
atggggtttcaccatgttggccaggctggtctccaactcctgacctcaggttcatcaatc
ttgccagaagatctgcagaatctgcagatattcttactagagaagccgcaccacacgggg
ctcctcactgttcccgtagcagcaggcatgtgcccccactgggcctctgtactggctgtt
cccactgcccgaacaccctcatgcaccatctgcactgtccaatatggccgcctctggcca
cacatggctactgagcagttgaacatggctggtccaaaccaacatttccaagacgtcgta
tgccacacggggctcctcactgttcccgtagcagcaggcatgtgcccccacagggcctct
gtactggctgttcccactgcccgaacaccctcatgcaccatctgcactgtccaatacggc
cgcctctggccacacatggctactgagcagttgaacatggctggtccaaaccaagatttc
caagacgtcgtgtgccacacggggctcctcactgttcccgtagcagcaggcatgtgcccc
cactgggcctctgtactggctgttcccactgcccgaacaccctcatgcaccatctgcact
gtccaatacggccgcctctggccacacatggctactgagcagttgaacatggctggtcca
aaccaagatttccaagacgtcgtatgccacacggggctcctcactgttcccgtagcagca
ggcatgtgcccccactgggcctctgtactggctgttcccactgcccgaacaccctcatgc
accatctgcactgtccaatacggccgcctctggccacacatggctactgagcagttgaac
atggctggtccaaaccaacatttccaagacgtcgtatgccacacggggctcctcactgtt
cccgtagaagcaggcatgtgcccccacagggcctctgtactggctgttcccactgcccga
acaccctcatgcaccatctgcactgtccaatacggccgcctctggccacacatggctact
gagcagttgaacatggctggtccaaaccaagatttccaagacgtcgtgtgccacacgggg
ctcctcactgttcccgtagcagcaggcatgtgcccccactgggcctctgtactggctgtt
cccactgcccgaacaccctcatgcaccatctgcactgtccaatacggccgcctctggcca
cacatggctactgagcagttgaacatggctggtccaaaccaacatttccaagacgtcgta
tgccacacggggctcctcactgttcccgtagcagcaggcatgtgcccccacagggcctct
gtactggctgttcccactgcccgaacaccctcatgcaccatctgcactgtccaatacggc
cgcctctggccacacatggctactgagcagttgaacatggctggtccaaaccaagatttc
caagacgtcgtgtgccacacggggctcctcactgttcccgtagcagcaggcatgtgcccc
cactgggcctctgtactggctgttcccactgcccgaacaccctcatgcaccatctgcact
gtccaatacggccgcctctggccacacatggctactgagcagttgaacatggctggtcca
aaccaacatttccaagacgtcgtatgccacacggggctcctcactgttcccgtagcagca
ggcatgtgcccccacagggcctctgtactggctgttcccactgcccgaacaccctcatgc
accatctgcactgtccaatacggccgcctctggccacacatggctactgagcagttgaac
atggctggtccaaaccaagatttccaagacgtcgtgtgccacacggggctcctcactgtt
cccgtagcagcaggcatgtgcccccacagggcctctgtactggctgttcccactgcccga
acaccctcatgcaccatctgcactgtccaatacggccgcctctggccacacatggctact
gagcagttgaacatggctggtccaaaccaagatttccaagacgtcgtgtgggggcgccat
ggaacgcagggccctcactggccctggggactgggtgacgtcaggggtgagcctctggtg
attggctccctcaccctgcgtaagatcaaagggcctaaagttagcttttctacaccctac
ctggataaggataagaaatag

>gi568815579r:47771458_47986257|GENSCAN_predicted_peptide_8|101_aa
XTITHFPEVTDGECVFPFHYKNGTYYDCIKSKARHKWCSLNKTYEGYWKFCSAEDFANCV
FPFWYRRLIYWECTDDGEAFGKKWCSLTKNFNKDRIWKYCE

>gi568815579r:47771458_47986257|GENSCAN_predicted_CDS_8|306_bp
naaactataactcattttccagaagttacagatggggagtgtgtctttccattccactat
aaaaatggaacatattatgactgcatcaagtccaaggcaagacacaagtggtgctcgtta
aacaagacctacgaaggatactggaagttttgcagtgcagaagattttgcaaactgtgta
tttcccttctggtacagacgcttgatctactgggagtgtactgatgatggggaagcattt
gggaaaaaatggtgttcactgaccaagaattttaacaaggaccgaatttggaaatactgt
gaatga