GENSCAN 1.0	Date run:  6-Nov-116	Time: 08:56:51

Sequence gi568815597r:38739556_38959646 : 220091 bp : 44.86% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   7466   7535   70  2  1   59  100    89 0.254   6.38
 1.02 Intr +   7631   7895  265  1  1   72   47   154 0.621   6.79
 1.03 Term +  10829  10884   56  0  2  100   38     7 0.242  -5.38
 1.04 PlyA +  11469  11474    6                               1.05

 2.05 PlyA -  11962  11957    6                               1.05
 2.04 Term -  13774  13657  118  0  1   63   37    87 0.571  -0.89
 2.03 Intr -  15068  14993   76  0  1   93   37    88 0.647   2.77
 2.02 Intr -  17050  16869  182  0  2   66   98    70 0.969   5.31
 2.01 Init -  17209  17148   62  1  2   98   59    89 0.984   7.72
 2.00 Prom -  24004  23965   40                              -7.46

 3.00 Prom +  25876  25915   40                              -6.26
 3.01 Sngl +  29038  29997  960  0  0   70   41   344 0.969  24.56
 3.02 PlyA +  30048  30053    6                               1.05

 4.00 Prom +  31314  31353   40                              -2.46
 4.01 Init +  32195  32235   41  1  2   77  109    57 0.781   6.37
 4.02 Intr +  32806  32867   62  1  2  128   50    15 0.087   0.08
 4.03 Term +  44420  44583  164  0  2   46   49   142 0.739   4.20
 4.04 PlyA +  45284  45289    6                               1.05

 5.00 Prom +  58644  58683   40                              -2.76
 5.01 Init +  64481  64587  107  1  2   58   78   100 0.155   3.69
 5.02 Intr +  64638  64793  156  0  0   49   23   170 0.123   5.73
 5.03 Intr +  68237  68371  135  2  0   57   37   138 0.242   5.28
 5.04 Intr +  70542  70725  184  0  1   85   39    24 0.309  -3.01
 5.05 Intr +  72341  72370   30  1  0  111   99    35 0.916   5.23
 5.06 Intr +  76759  77076  318  0  0  117   58   144 0.748  10.45
 5.07 Term +  80293  80457  165  0  0   15   48   106 0.106  -2.78
 5.08 PlyA +  81258  81263    6                               1.05

 6.10 PlyA -  81919  81914    6                               1.05
 6.09 Term -  85923  85823  101  1  2  105   44    67 0.870   2.29
 6.08 Intr -  86134  86080   55  1  1   70  105    44 0.059   2.85
 6.07 Intr - 100149 100094   56  1  2  121   90    55 0.169   7.70
 6.06 Intr - 106532 106384  149  1  2   66   85    94 0.999   6.78
 6.05 Intr - 112202 112060  143  2  2   59  106   117 0.995   9.75
 6.04 Intr - 112933 112819  115  0  1   83   89    45 0.978   4.55
 6.03 Intr - 116352 116153  200  0  2   72   60    93 0.988   3.05
 6.02 Intr - 117527 117324  204  2  0  103   66   160 0.972  14.70
 6.01 Init - 120091 119855  237  1  0   86  105   281 0.789  27.61
 6.00 Prom - 122501 122462   40                              -2.46

 7.06 PlyA - 123443 123438    6                               1.05
 7.05 Term - 125159 125115   45  2  0  118   45    60 0.952   1.91
 7.04 Intr - 127434 127325  110  1  2   -9   94   155 0.497   6.40
 7.03 Intr - 133535 133463   73  2  1  108   84   140 0.959  14.58
 7.02 Intr - 134354 134206  149  0  2   91   48    38 0.843   0.05
 7.01 Init - 136543 135223 1321  1  1   88   86   390 0.353  30.44
 7.00 Prom - 146847 146808   40                              -4.96

 8.09 PlyA - 146902 146897    6                               1.05
 8.08 Term - 147128 146949  180  2  0  107   43    89 0.957   3.91
 8.07 Intr - 148469 148408   62  0  2   85  117    40 0.879   5.05
 8.06 Intr - 153669 153609   61  0  1   63   97    59 0.235   2.61
 8.05 Intr - 156514 156414  101  2  2   94   83     4 0.149   0.33
 8.04 Intr - 171879 171767  113  2  2  111   82    70 0.632   8.72
 8.03 Intr - 179249 179204   46  0  1  131   11    46 0.215  -1.33
 8.02 Intr - 179782 179384  399  2  0   91   98   231 0.185  18.88
 8.01 Intr - 184355 184262   94  2  1   68   75    63 0.113   2.54

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init -  86107  86080   28  1  1   79  105    41 0.912   4.66


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815597r:38739556_38959646|GENSCAN_predicted_peptide_1|130_aa
XRLPCTFKGAIPRKWRALQSPELKLEGAGRGREAFDVIHWKLDAGAEAFCSRLSPFISAK
SDNSLISPAHLEDRSFTTMILDSAVEEKRMVLLLLILIKLARKLSGFSEVERDSRFCSSI
SRSQAHTTVF

>gi568815597r:38739556_38959646|GENSCAN_predicted_CDS_1|393_bp
nngaggctgccgtgcaccttcaaaggagccattccccgcaagtggagggctctccagagc
ccggagctcaagctggaaggggctggccgtggcagagaggcctttgatgtgattcactgg
aagcttgatgctggcgcggaggcattctgtagcaggctgagccctttcatctcagcaaag
agcgacaactccctaatatcaccggctcacctggaagacaggtcttttacaacaatgatt
ctggactcagctgtcgaagaaaaacggatggttttgcttttactcatcttgatcaaatta
gcccggaagctgtctggcttctcggaggtggagagggattcccgattttgttccagtatc
agcaggtcacaagctcatacaactgtattttga

>gi568815597r:38739556_38959646|GENSCAN_predicted_peptide_2|145_aa
MPDIGVEIRKAEDCEGKMDGNMGCSAEAEALGHRAKHICLKWKSEKLKRGPRESRAVLDL
SRKVCKLQNDCCLPSALHISHSRFIDTPFKAVPPNEKSMNYVVVQLGALWVPGMADSKAE
CVFPVLADADEEERERRGCVQQFFS

>gi568815597r:38739556_38959646|GENSCAN_predicted_CDS_2|438_bp
atgcctgatattggagttgagatccggaaggcagaagattgtgaaggaaagatggatgga
aatatggggtgttctgcagaagccgaggcccttggccacagagctaaacacatatgcttg
aagtggaagtcagagaaactgaagagaggtccacgagaaagtagagcagtcttggacctc
agccgcaaggtgtgcaagctacaaaatgactgctgcctcccttctgccctccacatctcc
cacagcaggttcatagatacacccttcaaggctgtccctccaaatgagaagagcatgaac
tatgtggttgtacagcttggagcactgtgggtccctggtatggcagacagcaaagcagaa
tgtgtgttccctgtgctggcagatgctgatgaggaagagagggagagacggggatgcgtg
cagcagttcttctcctaa

>gi568815597r:38739556_38959646|GENSCAN_predicted_peptide_3|319_aa
MDKFLNTYTLPRLNQEEVESLNRPITGSEIEAIINSLPTKKSPGPDGFTAEFYQRYKEEL
VPFLLKLFQSIEKEGILPNSFYEASIILIPKPGRDTTKKENFRPISLMNIDAKILNKTLA
NRIQQHIKKLIHHDQVGFVPGMQGWFNIGKSINVIQHINRTNNKNHTIISIDAEKAFDKI
QQPFMLKTLNKLGINGTYLKIIRAIYDKPTANIILNGQKLEAFPLKTGTREGCPLSPLLF
NIVLEVLARAIRQEKEIKGIQLGKEEVNLSLFADDMIVYLENPIFSAQNLLKLIGNFSKV
SGYKINVQKSQAFLYNNNR

>gi568815597r:38739556_38959646|GENSCAN_predicted_CDS_3|960_bp
atggataaattcctcaacacatacaccctcccaagactaaaccaggaagaagttgaatct
ctgaatagaccaataacaggctctgaaattgaggcaataattaatagcttaccaaccaaa
aaaagtccaggaccagatggattcacagctgaattctaccagaggtacaaggaggagctg
gtaccattccttctgaaactattccaatcaatagaaaaagagggaatcctccctaactca
ttttatgaggccagcatcatcctgataccaaagcctggcagagacacaacaaaaaaagag
aattttagaccaatatccctgatgaacatcgatgcaaaaatcctcaataaaacactggca
aaccgaatccagcagcacatcaaaaagcttatccaccatgatcaagtgggcttcgtccct
gggatgcaaggctggttcaacataggaaaatcaataaatgtaatccagcatataaacaga
accaacaacaaaaaccatacgattatctcaatagatgcagaaaaggcctttgacaaaatt
caacaacctttcatgctaaaaaccctcaataaattaggtattaatgggacgtatctcaaa
ataataagagctatctatgacaaacccacagccaatatcatactgaatgggcaaaaactg
gaagcattccctttgaaaactggcacaagagagggatgccctctctcaccactcctattc
aacatagtgttggaagttctggccagggcaatcaggcaggagaaggaaataaagggtatt
caattaggaaaagaggaagtcaacttgtccctgtttgcagatgacatgatcgtatatcta
gaaaaccccatcttctcagcccaaaatctccttaagctgataggcaacttcagcaaagtc
tcaggatacaaaatcaatgtgcaaaaatcacaagcattcttatacaacaataatagataa

>gi568815597r:38739556_38959646|GENSCAN_predicted_peptide_4|88_aa
MKAEEWLLDVAISRSLGGHFVFLEANLAYVYKLPPLCWVSRRDSVFAPPTGLAHVSVHTR
ASFRKRSHRKGSPSGDPGQERRILLINY

>gi568815597r:38739556_38959646|GENSCAN_predicted_CDS_4|267_bp
atgaaagcagaagagtggctgttggatgtggccattagcagaagtctagggggtcacttt
gtgtttctagaggcaaatctagcttatgtgtacaaacttccaccactttgctgggtcagc
cgccgtgactcagtgttcgcgcccccgaccgggctggcacacgtgagtgtgcacacgcgc
gcaagcttccggaagcgcagccaccgcaaggggtctccttcgggggatccaggccaggag
cgcaggatcctgctcattaattattga

>gi568815597r:38739556_38959646|GENSCAN_predicted_peptide_5|364_aa
MRSQGQASAASGLGARRPRPTLPLWPLAPARARAARAAISRAACCPAPRCSRPRATGGNN
EAQRHDRGPRLRRRQQRGRRISISEAFLCFGYSPGLRPDLPALRNNAIHIPPGSLEHISG
LHFSSEHAYSPVRTALWVRGLEYRIQTAPSLCCNIFRAFSSSTQPDPQPLPTCYGASPGL
ESGELSLVFLGPRQGFEQPLVTKQALRSRGGGSSARNRTRCKLLGYPFTRLTPPTQVFPF
PQTASPAANKDGCSRPLRAVKGVLLQRLQRRLVRPELELQAPRESHLPPWAVGGLPATLA
NCMAVWNNYRVFLNVRHKCIKDDQGSYLYQQADFLHLVGLHQTTKETVIDCTVEEIQASR
GGLS

>gi568815597r:38739556_38959646|GENSCAN_predicted_CDS_5|1095_bp
atgcggagtcaggggcaggcctcggcggcgtccgggctgggggcgaggcgcccacgcccc
accctcccgctgtggccgctggcgccggcccgagcgcgcgcagcccgcgcagccatcagc
cgcgccgcgtgctgtcccgcgccccgctgctcgcggccgcgggccaccggcggtaataat
gaggcacagcgccatgaccgcggccctcggctgcgccgccggcagcagcgcgggcgccgc
attagcatctccgaagccttcctgtgtttcggctacagccctggcctgcgtcctgacctg
ccagcccttcgcaacaatgccatccacattcctcctgggtctctggaacacatctctggc
ttgcacttctcctctgagcacgcttattcacctgtcaggactgccctgtgggtccgaggc
ttagaatacaggatccaaactgcaccatccctctgctgcaacatcttcagggctttctca
tcatccacacaaccagatcctcagcctcttccgacctgctatggagcaagccctggactg
gagtctggagagctgagccttgttttcctgggacctcggcaggggtttgagcagccactg
gtgaccaaacaggctctgaggagccgaggcggtggcagcagcgcgaggaacagaacacgc
tgcaaactgcttggctacccctttacaagactgacgccgccgacacaagtttttccattt
ccccaaacagcctctccggctgccaataaagacggctgctctaggcccttgcgtgctgtc
aaaggggtacttctccagcggcttcagaggcggcttgttcgcccagagctggagctgcag
gcccctagagagagccaccttcccccttgggctgttggtgggctccctgcgaccctggcc
aattgcatggctgtgtggaataattaccgggtctttttgaatgtaagacacaaatgtatc
aaggatgatcaaggttcctacctctaccagcaagctgattttttgcatttggtgggcctc
catcagaccaccaaggaaacagtcatagattgtactgtggaggaaattcaggcgtcccgc
ggaggcctaagctga

>gi568815597r:38739556_38959646|GENSCAN_predicted_peptide_6|419_aa
MSLQYGAEETPLAGSYGAADSFPKDFGYGVEEEEEEAAAAGGGVGAGAGGGCGPGGADSS
KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQ
MDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKV
DGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYDHSIFEAFSKVVQKLIPQL
PTLENLLNIFISNSGIEKAFLFDVVSKIYIATDSSPVDMQSYELCCDMIDVVIDVSCIYG
LKEDGSGSAYDKESMAIIKLNNTTVLYLKEVTKFLALVCILREESFERKGLIDYNFHCFR
KAIHEVFESFWNRAEEAMSHVLIGRKGERTLALSWPPNLPGSSPSTSIYRISPNGHAGS

>gi568815597r:38739556_38959646|GENSCAN_predicted_CDS_6|1260_bp
atgtccctgcagtacggggcggaggagacgcccctcgccggcagttacggcgcggccgat
tcgtttccaaaggacttcggctacggcgtggaggaggaggaagaggaggcggcggcggcg
ggcggaggggttggggcaggggcaggcggtggctgtggtccggggggcgctgacagctcc
aagccgaggattctgctcatgggactccggcgcagcggcaagtcctccatccagaaggtg
gtgtttcataagatgtcacccaacgagaccctctttttggaaagtaccaacaagatttat
aaggatgacatttccaatagctcctttgtgaatttccagatatgggattttcctgggcaa
atggacttttttgacccaacctttgactatgagatgatcttcaggggaacaggagcattg
atatacgtcattgacgcacaggatgactacatggaggctttaacaagacttcacattact
gtttctaaagcctacaaagttaacccagacatgaattttgaggtttttattcacaaagtt
gatggtctgtctgatgatcacaaaatagaaacacagagggacattcatcaaagggccaat
gatgaccttgcagatgctgggctagaaaaactccatcttagcttttatctgactagtatc
tatgaccattcaatatttgaagcctttagtaaggtggtgcagaaactcattccacaactg
ccgaccttggaaaacctattaaatatctttatatcaaattcaggtattgaaaaagctttt
ctctttgatgttgtcagcaaaatctacattgcaacagacagttcccctgtggatatgcaa
tcttatgaactttgctgtgacatgatcgatgttgtaattgatgtgtcttgtatatatggg
ttaaaggaagatggaagtggaagtgcttatgacaaagaatctatggcaattatcaagctg
aataatacaactgtcctttatttaaaggaggtgactaaatttttggcactggtctgcatt
ctaagggaagaaagctttgaaagaaaaggtttaatagactacaacttccactgtttccga
aaagctattcatgaggtttttgagagcttttggaacagggctgaggaagccatgagtcac
gtcctcattggccgtaaaggtgaacgaaccctagctctgtcttggcctccaaacctaccc
ggttctagcccctccacaagtatctaccgcatcagccccaacgggcatgcagggagctag

>gi568815597r:38739556_38959646|GENSCAN_predicted_peptide_7|565_aa
MGDWNLLGDTLEEVHIHSTMIGKIWLTILFIFRMLVLGVAAEDVWNDEQSGFICNTEQPG
CRNVCYDQAFPISLIRYWVLQVIFVSSPSLVYMGHALYRLRVLEEERQRMKAQLRVELEE
VEFEMPRDRRRLEQELCQLEKRKLNKAPLRGTLLCTYVIHIFTRSVVEVGFMIGQYLLYG
FHLEPLFKCHGHPCPNIIDCFVSRPTEKTIFLLFMQSIATISLFLNILEIFHLGFKKIKR
GLWGKYKLKKEHNEFHANKAKQNVAKYQSTSANSLKRLPSAPDYNLLVEKQTHTAVYPSL
NSSSVFQPNPDNHSVNDEKCILDEQETVLSNEISTLSTSCSHFQHISSNNNKDTHKIFGK
ELNGNQLMEKRETEGKDSKRNYYSRGHRSIPGVAIDGENNMRQSPQTVFSLPANCDWKPR
WLRATWGSSTEHENRGSPPKVPGSKATASSLLLILQRPTSSQPRLKETPKIKAEAKIYDS
KHPPRLLQSTAADSKREQFRRYLEKSGVLDTLTKGAATPENPEIELLRLELAEMKEKYEA
IVEENKKLKAKLAQYEPPQEEKRAE

>gi568815597r:38739556_38959646|GENSCAN_predicted_CDS_7|1698_bp
atgggggactggaatctccttggagatactctggaggaagttcacatccactccaccatg
attggaaagatctggctcaccatcctgttcatatttcgaatgcttgttctgggtgtagca
gctgaagatgtctggaatgatgagcagtctggcttcatctgcaatacagaacaaccaggc
tgcagaaatgtatgctacgaccaggcctttcctatctccctcattagatactgggttctg
caggtgatatttgtgtcttcaccatccctggtctacatgggccatgcattgtaccgactg
agagttcttgaggaagagaggcaaaggatgaaagctcagttaagagtagaactggaggag
gtagagtttgaaatgcctagggatcggaggagattggagcaagagctttgtcagctggag
aaaaggaaactaaataaagctccactcagaggaaccttgctttgcacttatgtgatacac
attttcactcgctctgtggttgaagttggattcatgattggacagtaccttttatatgga
tttcacttagagccgctatttaagtgccatggccacccgtgtccaaatataatcgactgt
tttgtctcaagaccaacagaaaagacaatattcctattatttatgcaatctatagccact
atttcacttttcttaaacattcttgaaattttccacctaggttttaaaaagattaaaaga
gggctttggggaaaatacaagttgaagaaggaacataatgaattccatgcaaacaaggca
aaacaaaatgtagccaaataccagagcacatctgcaaattcactgaagcgactcccttct
gcccctgattataatctgttagtggaaaagcaaacacacactgcagtgtaccctagttta
aattcatcttctgtattccagccaaatcctgacaatcatagtgtaaatgatgagaaatgc
attttggatgaacaggaaactgtactttctaatgagatttccacacttagtactagttgt
agtcattttcaacacatcagttcaaacaataacaaagacactcataaaatatttggaaaa
gaacttaatggtaaccagttaatggaaaaaagagaaactgaaggcaaagacagcaaaagg
aactactactctagaggtcaccgttctattccaggtgttgctatagatggagagaacaac
atgaggcagtcaccccaaacagttttctccttgccagctaactgcgattggaaaccgcgg
tggcttagagctacatggggttcctctacagaacatgaaaaccgggggtcacctcctaaa
gtgcctggctcaaaagctactgcaagctcgttactgctcatcctccagaggcccacatca
agtcagccacgactcaaggagactccaaagataaaagctgaagccaaaatatatgattct
aaacaccctcctcggctactgcaaagcactgccgccgactcgaagcgtgagcagttccgg
aggtacttggagaagtcgggggtgctggacacgctgaccaagggagctgctactccagaa
aatccagaaatagagctgcttcgcctagaactggccgaaatgaaagagaagtatgaagct
attgtagaagaaaataaaaaactgaaagcaaagcttgctcagtatgaaccacctcaggag
gagaagcgtgctgaatag

>gi568815597r:38739556_38959646|GENSCAN_predicted_peptide_8|351_aa
DENFSQQCHPVLICVCEAFQKRVGSNLLQIRGKALESSRCARQPREERQPEDLGPPAVPW
DSCPSGEEGGPRTMAAVHDLEMESMNLNMGREMKEELEEEEKMREDGGGKDRAKSKKVHR
IVSKWMLPEKSRGTYLERANCFPPPVFIISISLAEVNGERGGHRAAFEAFPILTVTANPG
VQHILGNLCMQLVLGIPLEMVHKGLRVGLVYLAGVIAGSLASSIFDPLRYLVGASGGVYA
LMGGYFMNVLVNFQEMIPAFGIFRLLIIILIIVLDMGFALYRRFFVPEDGSPVSFAAHIA
GGFAGMSIGYTVFSCFDKALLKDPRFWIAIAAYLACVLFAVFFNIFLSPAN

>gi568815597r:38739556_38959646|GENSCAN_predicted_CDS_8|1056_bp
gatgagaacttctcgcagcagtgccacccagttttgatctgtgtatgcgaggcctttcaa
aaaagagtgggcagcaacttgctgcagataagaggaaaggccttggaaagcagtcgttgc
gccagacagcccagggaagagcggcagcctgaggacctagggccacctgctgttccctgg
gattcatgtccttctggggaggagggaggacccaggacaatggctgctgttcatgatctg
gagatggagagcatgaatctgaatatggggagagagatgaaagaagagctggaggaagag
gagaaaatgagagaggatgggggaggtaaagatcgggccaagagtaaaaaggtccacagg
attgtctcaaaatggatgctgcccgaaaagtcccgaggaacatacttggagagagctaac
tgcttcccgcctcccgtgttcatcatctccatcagcctggccgaggtgaatggggagcgg
ggtgggcaccgggctgcctttgaggctttccctatactcacggtcactgccaacccagga
gttcagcacatcttggggaatctttgtatgcagcttgttttgggtattcccttggaaatg
gtccacaaaggcctccgtgtggggctggtgtacctggcaggagtgattgcagggtccctt
gccagctccatctttgacccactcagatatcttgtgggagcttcaggaggagtctatgct
ctgatgggaggctattttatgaatgttctggtgaattttcaagaaatgattcctgccttt
ggaattttcagactgctgatcatcatcctgataattgtgttggacatgggatttgctctc
tatagaaggttctttgttcctgaagatgggtctccggtgtcttttgcagctcacattgca
ggtggatttgctggaatgtccattggctacacggtgtttagctgctttgataaagcactg
ctgaaagatccaaggttttggatagcaattgctgcatatttagcttgtgtcttatttgct
gtgtttttcaacattttcctatctccagcaaactga