Result of FASTA (omim) for pF1KB6907
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6907, 204 aa
  1>>>pF1KB6907 204 - 204 aa - 204 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5774+/-0.000315; mu= 12.6327+/- 0.020
 mean_var=72.8814+/-14.374, 0's: 0 Z-trim(116.2): 26  B-trim: 0 in 0/57
 Lambda= 0.150233
 statistics sampled from 27211 (27237) to 27211 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.7), E-opt: 0.2 (0.319), width:  16
 Scan time:  6.220

The best scores are:                                      opt bits E(85289)
NP_001172006 (OMIM: 601925,615244) rho GDP-dissoci ( 204) 1338 298.7 4.4e-81
NP_004300 (OMIM: 601925,615244) rho GDP-dissociati ( 204) 1338 298.7 4.4e-81
NP_001288169 (OMIM: 601925,615244) rho GDP-dissoci ( 235) 1083 243.4 2.2e-64
NP_001288170 (OMIM: 601925,615244) rho GDP-dissoci ( 235) 1083 243.4 2.2e-64
NP_001166 (OMIM: 602843) rho GDP-dissociation inhi ( 201)  938 212.0 5.5e-55
NP_001308352 (OMIM: 602843) rho GDP-dissociation i ( 201)  938 212.0 5.5e-55
NP_001308349 (OMIM: 602843) rho GDP-dissociation i ( 201)  938 212.0 5.5e-55
NP_001308350 (OMIM: 602843) rho GDP-dissociation i ( 201)  938 212.0 5.5e-55
NP_001308351 (OMIM: 602843) rho GDP-dissociation i ( 201)  938 212.0 5.5e-55
NP_001288171 (OMIM: 601925,615244) rho GDP-dissoci ( 337)  926 209.5 5.1e-54
NP_001172007 (OMIM: 601925,615244) rho GDP-dissoci ( 160)  896 202.8 2.5e-52
NP_001167 (OMIM: 602844) rho GDP-dissociation inhi ( 225)  793 180.6 1.7e-45
NP_001288172 (OMIM: 601925,615244) rho GDP-dissoci ( 249)  766 174.7 1.1e-43
XP_011521876 (OMIM: 601925,615244) PREDICTED: rho  ( 249)  766 174.7 1.1e-43


>>NP_001172006 (OMIM: 601925,615244) rho GDP-dissociatio  (204 aa)
 initn: 1338 init1: 1338 opt: 1338  Z-score: 1576.6  bits: 298.7 E(85289): 4.4e-81
Smith-Waterman score: 1338; 100.0% identity (100.0% similar) in 204 aa overlap (1-204:1-204)

               10        20        30        40        50        60
pF1KB6 MAEQEPTAEQLAQIAAENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAEQEPTAEQLAQIAAENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 VSADPNVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VSADPNVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 EIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSR
              130       140       150       160       170       180

              190       200    
pF1KB6 FTDDDKTDHLSWEWNLTIKKDWKD
       ::::::::::::::::::::::::
NP_001 FTDDDKTDHLSWEWNLTIKKDWKD
              190       200    

>>NP_004300 (OMIM: 601925,615244) rho GDP-dissociation i  (204 aa)
 initn: 1338 init1: 1338 opt: 1338  Z-score: 1576.6  bits: 298.7 E(85289): 4.4e-81
Smith-Waterman score: 1338; 100.0% identity (100.0% similar) in 204 aa overlap (1-204:1-204)

               10        20        30        40        50        60
pF1KB6 MAEQEPTAEQLAQIAAENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MAEQEPTAEQLAQIAAENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 VSADPNVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 VSADPNVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 EIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 EIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSR
              130       140       150       160       170       180

              190       200    
pF1KB6 FTDDDKTDHLSWEWNLTIKKDWKD
       ::::::::::::::::::::::::
NP_004 FTDDDKTDHLSWEWNLTIKKDWKD
              190       200    

>>NP_001288169 (OMIM: 601925,615244) rho GDP-dissociatio  (235 aa)
 initn: 1083 init1: 1083 opt: 1083  Z-score: 1277.0  bits: 243.4 E(85289): 2.2e-64
Smith-Waterman score: 1083; 98.2% identity (99.4% similar) in 171 aa overlap (1-171:1-171)

               10        20        30        40        50        60
pF1KB6 MAEQEPTAEQLAQIAAENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAEQEPTAEQLAQIAAENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 VSADPNVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VSADPNVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 EIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSR
       :::::::::::::::::::::::::::::::::::::::::::::::: ..         
NP_001 EIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTPVEEAPKGSISPSHPRPGFR
              130       140       150       160       170       180

              190       200                                   
pF1KB6 FTDDDKTDHLSWEWNLTIKKDWKD                               
                                                              
NP_001 RERSSHSPGPVVAPGRVRLLLRGGAGVWDARPRGGRAVLQPRCSLASPLVAVGPV
              190       200       210       220       230     

>>NP_001288170 (OMIM: 601925,615244) rho GDP-dissociatio  (235 aa)
 initn: 1083 init1: 1083 opt: 1083  Z-score: 1277.0  bits: 243.4 E(85289): 2.2e-64
Smith-Waterman score: 1083; 98.2% identity (99.4% similar) in 171 aa overlap (1-171:1-171)

               10        20        30        40        50        60
pF1KB6 MAEQEPTAEQLAQIAAENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAEQEPTAEQLAQIAAENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 VSADPNVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VSADPNVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 EIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSR
       :::::::::::::::::::::::::::::::::::::::::::::::: ..         
NP_001 EIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTPVEEAPKGSISPSHPRPGFR
              130       140       150       160       170       180

              190       200                                   
pF1KB6 FTDDDKTDHLSWEWNLTIKKDWKD                               
                                                              
NP_001 RERSSHSPGPVVAPGRVRLLLRGGAGVWDARPRGGRAVLQPRCSLASPLVAVGPV
              190       200       210       220       230     

>>NP_001166 (OMIM: 602843) rho GDP-dissociation inhibito  (201 aa)
 initn: 961 init1: 925 opt: 938  Z-score: 1108.2  bits: 212.0 E(85289): 5.5e-55
Smith-Waterman score: 938; 67.0% identity (85.0% similar) in 206 aa overlap (1-204:1-201)

               10        20          30        40        50        
pF1KB6 MAEQEPTAEQLAQIAAENEEDE--HSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGR
       :.:. :  .     . :...::   ..::::: :::..:.::.::::::: :::..::: 
NP_001 MTEKAPEPH-----VEEDDDDELDSKLNYKPPPQKSLKELQEMDKDDESLIKYKKTLLGD
                    10        20        30        40        50     

       60        70        80        90       100       110        
pF1KB6 VAVSADPNVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRV
         : .::..:::::: ::::: :::::. .:::::::..::...::::: :::.:: :.:
NP_001 GPVVTDPKAPNVVVTRLTLVCESAPGPITMDLTGDLEALKKETIVLKEGSEYRVKIHFKV
          60        70        80        90       100       110     

      120       130       140       150       160       170        
pF1KB6 NREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIK
       ::.::::.::.::::: :::.::. .:::::::: ::::::::::::::::::::.:  :
NP_001 NRDIVSGLKYVQHTYRTGVKVDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNK
         120       130       140       150       160       170     

      180       190       200    
pF1KB6 SRFTDDDKTDHLSWEWNLTIKKDWKD
       : :::::: :::::::::.:::.: .
NP_001 SFFTDDDKQDHLSWEWNLSIKKEWTE
         180       190       200 

>>NP_001308352 (OMIM: 602843) rho GDP-dissociation inhib  (201 aa)
 initn: 961 init1: 925 opt: 938  Z-score: 1108.2  bits: 212.0 E(85289): 5.5e-55
Smith-Waterman score: 938; 67.0% identity (85.0% similar) in 206 aa overlap (1-204:1-201)

               10        20          30        40        50        
pF1KB6 MAEQEPTAEQLAQIAAENEEDE--HSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGR
       :.:. :  .     . :...::   ..::::: :::..:.::.::::::: :::..::: 
NP_001 MTEKAPEPH-----VEEDDDDELDSKLNYKPPPQKSLKELQEMDKDDESLIKYKKTLLGD
                    10        20        30        40        50     

       60        70        80        90       100       110        
pF1KB6 VAVSADPNVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRV
         : .::..:::::: ::::: :::::. .:::::::..::...::::: :::.:: :.:
NP_001 GPVVTDPKAPNVVVTRLTLVCESAPGPITMDLTGDLEALKKETIVLKEGSEYRVKIHFKV
          60        70        80        90       100       110     

      120       130       140       150       160       170        
pF1KB6 NREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIK
       ::.::::.::.::::: :::.::. .:::::::: ::::::::::::::::::::.:  :
NP_001 NRDIVSGLKYVQHTYRTGVKVDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNK
         120       130       140       150       160       170     

      180       190       200    
pF1KB6 SRFTDDDKTDHLSWEWNLTIKKDWKD
       : :::::: :::::::::.:::.: .
NP_001 SFFTDDDKQDHLSWEWNLSIKKEWTE
         180       190       200 

>>NP_001308349 (OMIM: 602843) rho GDP-dissociation inhib  (201 aa)
 initn: 961 init1: 925 opt: 938  Z-score: 1108.2  bits: 212.0 E(85289): 5.5e-55
Smith-Waterman score: 938; 67.0% identity (85.0% similar) in 206 aa overlap (1-204:1-201)

               10        20          30        40        50        
pF1KB6 MAEQEPTAEQLAQIAAENEEDE--HSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGR
       :.:. :  .     . :...::   ..::::: :::..:.::.::::::: :::..::: 
NP_001 MTEKAPEPH-----VEEDDDDELDSKLNYKPPPQKSLKELQEMDKDDESLIKYKKTLLGD
                    10        20        30        40        50     

       60        70        80        90       100       110        
pF1KB6 VAVSADPNVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRV
         : .::..:::::: ::::: :::::. .:::::::..::...::::: :::.:: :.:
NP_001 GPVVTDPKAPNVVVTRLTLVCESAPGPITMDLTGDLEALKKETIVLKEGSEYRVKIHFKV
          60        70        80        90       100       110     

      120       130       140       150       160       170        
pF1KB6 NREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIK
       ::.::::.::.::::: :::.::. .:::::::: ::::::::::::::::::::.:  :
NP_001 NRDIVSGLKYVQHTYRTGVKVDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNK
         120       130       140       150       160       170     

      180       190       200    
pF1KB6 SRFTDDDKTDHLSWEWNLTIKKDWKD
       : :::::: :::::::::.:::.: .
NP_001 SFFTDDDKQDHLSWEWNLSIKKEWTE
         180       190       200 

>>NP_001308350 (OMIM: 602843) rho GDP-dissociation inhib  (201 aa)
 initn: 961 init1: 925 opt: 938  Z-score: 1108.2  bits: 212.0 E(85289): 5.5e-55
Smith-Waterman score: 938; 67.0% identity (85.0% similar) in 206 aa overlap (1-204:1-201)

               10        20          30        40        50        
pF1KB6 MAEQEPTAEQLAQIAAENEEDE--HSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGR
       :.:. :  .     . :...::   ..::::: :::..:.::.::::::: :::..::: 
NP_001 MTEKAPEPH-----VEEDDDDELDSKLNYKPPPQKSLKELQEMDKDDESLIKYKKTLLGD
                    10        20        30        40        50     

       60        70        80        90       100       110        
pF1KB6 VAVSADPNVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRV
         : .::..:::::: ::::: :::::. .:::::::..::...::::: :::.:: :.:
NP_001 GPVVTDPKAPNVVVTRLTLVCESAPGPITMDLTGDLEALKKETIVLKEGSEYRVKIHFKV
          60        70        80        90       100       110     

      120       130       140       150       160       170        
pF1KB6 NREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIK
       ::.::::.::.::::: :::.::. .:::::::: ::::::::::::::::::::.:  :
NP_001 NRDIVSGLKYVQHTYRTGVKVDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNK
         120       130       140       150       160       170     

      180       190       200    
pF1KB6 SRFTDDDKTDHLSWEWNLTIKKDWKD
       : :::::: :::::::::.:::.: .
NP_001 SFFTDDDKQDHLSWEWNLSIKKEWTE
         180       190       200 

>>NP_001308351 (OMIM: 602843) rho GDP-dissociation inhib  (201 aa)
 initn: 961 init1: 925 opt: 938  Z-score: 1108.2  bits: 212.0 E(85289): 5.5e-55
Smith-Waterman score: 938; 67.0% identity (85.0% similar) in 206 aa overlap (1-204:1-201)

               10        20          30        40        50        
pF1KB6 MAEQEPTAEQLAQIAAENEEDE--HSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGR
       :.:. :  .     . :...::   ..::::: :::..:.::.::::::: :::..::: 
NP_001 MTEKAPEPH-----VEEDDDDELDSKLNYKPPPQKSLKELQEMDKDDESLIKYKKTLLGD
                    10        20        30        40        50     

       60        70        80        90       100       110        
pF1KB6 VAVSADPNVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRV
         : .::..:::::: ::::: :::::. .:::::::..::...::::: :::.:: :.:
NP_001 GPVVTDPKAPNVVVTRLTLVCESAPGPITMDLTGDLEALKKETIVLKEGSEYRVKIHFKV
          60        70        80        90       100       110     

      120       130       140       150       160       170        
pF1KB6 NREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIK
       ::.::::.::.::::: :::.::. .:::::::: ::::::::::::::::::::.:  :
NP_001 NRDIVSGLKYVQHTYRTGVKVDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNK
         120       130       140       150       160       170     

      180       190       200    
pF1KB6 SRFTDDDKTDHLSWEWNLTIKKDWKD
       : :::::: :::::::::.:::.: .
NP_001 SFFTDDDKQDHLSWEWNLSIKKEWTE
         180       190       200 

>>NP_001288171 (OMIM: 601925,615244) rho GDP-dissociatio  (337 aa)
 initn: 946 init1: 926 opt: 926  Z-score: 1090.8  bits: 209.5 E(85289): 5.1e-54
Smith-Waterman score: 926; 100.0% identity (100.0% similar) in 145 aa overlap (1-145:1-145)

               10        20        30        40        50        60
pF1KB6 MAEQEPTAEQLAQIAAENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAEQEPTAEQLAQIAAENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 VSADPNVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VSADPNVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 EIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSR
       :::::::::::::::::::::::::                                   
NP_001 EIVSGMKYIQHTYRKGVKIDKTDYMTTTRPTTCPGSGISPSRRTGRTEPSQRRAGQTDGR
              130       140       150       160       170       180




204 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 13:07:07 2016 done: Fri Nov  4 13:07:08 2016
 Total Scan time:  6.220 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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