Result of FASTA (ccds) for pF1KB6907
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6907, 204 aa
  1>>>pF1KB6907 204 - 204 aa - 204 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5108+/-0.000732; mu= 12.7484+/- 0.044
 mean_var=70.5128+/-13.820, 0's: 0 Z-trim(109.1): 14  B-trim: 0 in 0/53
 Lambda= 0.152736
 statistics sampled from 10625 (10634) to 10625 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.71), E-opt: 0.2 (0.327), width:  16
 Scan time:  1.950

The best scores are:                                      opt bits E(32554)
CCDS11788.1 ARHGDIA gene_id:396|Hs108|chr17        ( 204) 1338 303.4 6.5e-83
CCDS77133.1 ARHGDIA gene_id:396|Hs108|chr17        ( 235) 1083 247.2   6e-66
CCDS8671.1 ARHGDIB gene_id:397|Hs108|chr12         ( 201)  938 215.2 2.2e-56
CCDS58609.1 ARHGDIA gene_id:396|Hs108|chr17        ( 160)  896 205.9 1.1e-53
CCDS10404.1 ARHGDIG gene_id:398|Hs108|chr16        ( 225)  793 183.3   1e-46


>>CCDS11788.1 ARHGDIA gene_id:396|Hs108|chr17             (204 aa)
 initn: 1338 init1: 1338 opt: 1338  Z-score: 1602.0  bits: 303.4 E(32554): 6.5e-83
Smith-Waterman score: 1338; 100.0% identity (100.0% similar) in 204 aa overlap (1-204:1-204)

               10        20        30        40        50        60
pF1KB6 MAEQEPTAEQLAQIAAENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MAEQEPTAEQLAQIAAENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 VSADPNVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VSADPNVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 EIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 EIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSR
              130       140       150       160       170       180

              190       200    
pF1KB6 FTDDDKTDHLSWEWNLTIKKDWKD
       ::::::::::::::::::::::::
CCDS11 FTDDDKTDHLSWEWNLTIKKDWKD
              190       200    

>>CCDS77133.1 ARHGDIA gene_id:396|Hs108|chr17             (235 aa)
 initn: 1083 init1: 1083 opt: 1083  Z-score: 1297.4  bits: 247.2 E(32554): 6e-66
Smith-Waterman score: 1083; 98.2% identity (99.4% similar) in 171 aa overlap (1-171:1-171)

               10        20        30        40        50        60
pF1KB6 MAEQEPTAEQLAQIAAENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 MAEQEPTAEQLAQIAAENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 VSADPNVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 VSADPNVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 EIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSR
       :::::::::::::::::::::::::::::::::::::::::::::::: ..         
CCDS77 EIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTPVEEAPKGSISPSHPRPGFR
              130       140       150       160       170       180

              190       200                                   
pF1KB6 FTDDDKTDHLSWEWNLTIKKDWKD                               
                                                              
CCDS77 RERSSHSPGPVVAPGRVRLLLRGGAGVWDARPRGGRAVLQPRCSLASPLVAVGPV
              190       200       210       220       230     

>>CCDS8671.1 ARHGDIB gene_id:397|Hs108|chr12              (201 aa)
 initn: 961 init1: 925 opt: 938  Z-score: 1125.8  bits: 215.2 E(32554): 2.2e-56
Smith-Waterman score: 938; 67.0% identity (85.0% similar) in 206 aa overlap (1-204:1-201)

               10        20          30        40        50        
pF1KB6 MAEQEPTAEQLAQIAAENEEDE--HSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGR
       :.:. :  .     . :...::   ..::::: :::..:.::.::::::: :::..::: 
CCDS86 MTEKAPEPH-----VEEDDDDELDSKLNYKPPPQKSLKELQEMDKDDESLIKYKKTLLGD
                    10        20        30        40        50     

       60        70        80        90       100       110        
pF1KB6 VAVSADPNVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRV
         : .::..:::::: ::::: :::::. .:::::::..::...::::: :::.:: :.:
CCDS86 GPVVTDPKAPNVVVTRLTLVCESAPGPITMDLTGDLEALKKETIVLKEGSEYRVKIHFKV
          60        70        80        90       100       110     

      120       130       140       150       160       170        
pF1KB6 NREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIK
       ::.::::.::.::::: :::.::. .:::::::: ::::::::::::::::::::.:  :
CCDS86 NRDIVSGLKYVQHTYRTGVKVDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNK
         120       130       140       150       160       170     

      180       190       200    
pF1KB6 SRFTDDDKTDHLSWEWNLTIKKDWKD
       : :::::: :::::::::.:::.: .
CCDS86 SFFTDDDKQDHLSWEWNLSIKKEWTE
         180       190       200 

>>CCDS58609.1 ARHGDIA gene_id:396|Hs108|chr17             (160 aa)
 initn: 916 init1: 884 opt: 896  Z-score: 1077.3  bits: 205.9 E(32554): 1.1e-53
Smith-Waterman score: 945; 77.9% identity (78.4% similar) in 204 aa overlap (1-204:1-160)

               10        20        30        40        50        60
pF1KB6 MAEQEPTAEQLAQIAAENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MAEQEPTAEQLAQIAAENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 VSADPNVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 VSADPNVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 EIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSR
       ::::::::::::::::::                                          
CCDS58 EIVSGMKYIQHTYRKGVK------------------------------------------
              130                                                  

              190       200    
pF1KB6 FTDDDKTDHLSWEWNLTIKKDWKD
         .:::::::::::::::::::::
CCDS58 --NDDKTDHLSWEWNLTIKKDWKD
        140       150       160

>>CCDS10404.1 ARHGDIG gene_id:398|Hs108|chr16             (225 aa)
 initn: 792 init1: 792 opt: 793  Z-score: 952.4  bits: 183.3 E(32554): 1e-46
Smith-Waterman score: 793; 61.1% identity (83.2% similar) in 190 aa overlap (15-204:36-225)

                               10        20        30        40    
pF1KB6                 MAEQEPTAEQLAQIAAENEEDEHSVNYKPPAQKSIQEIQELDKD
                                     :...  ::   .:. :..::. ::..:: :
CCDS10 ACELGAQLLELLRLALCARVLLADKEGGPPAVDEVLDEAVPEYRAPGRKSLLEIRQLDPD
          10        20        30        40        50        60     

           50        60        70        80        90       100    
pF1KB6 DESLRKYKEALLGRVAVSADPNVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVL
       :.:: :::..::: .  ..::..::: :: :::.  .::::. .::::::  .: : :::
CCDS10 DRSLAKYKRVLLGPLPPAVDPSLPNVQVTRLTLLSEQAPGPVVMDLTGDLAVLKDQVFVL
          70        80        90       100       110       120     

          110       120       130       140       150       160    
pF1KB6 KEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTPVEE
       ::::.::.::::.:.::::::.: ..::::.:...::: :::::::: :.::::.:::::
CCDS10 KEGVDYRVKISFKVHREIVSGLKCLHHTYRRGLRVDKTVYMVGSYGPSAQEYEFVTPVEE
         130       140       150       160       170       180     

          170       180       190       200    
pF1KB6 APKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDWKD
       ::.: :.:: : . : :::::.: ::::::.: : .::::
CCDS10 APRGALVRGPYLVVSLFTDDDRTHHLSWEWGLCICQDWKD
         190       200       210       220     




204 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 13:07:06 2016 done: Fri Nov  4 13:07:06 2016
 Total Scan time:  1.950 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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