Result of FASTA (ccds) for pF1KB6928
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6928, 227 aa
  1>>>pF1KB6928 227 - 227 aa - 227 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4121+/-0.000759; mu= 13.5442+/- 0.045
 mean_var=68.6978+/-13.612, 0's: 0 Z-trim(108.5): 22  B-trim: 0 in 0/49
 Lambda= 0.154740
 statistics sampled from 10249 (10268) to 10249 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.704), E-opt: 0.2 (0.315), width:  16
 Scan time:  2.240

The best scores are:                                      opt bits E(32554)
CCDS4548.1 PRL gene_id:5617|Hs108|chr6             ( 227) 1513 346.3 9.3e-96
CCDS11653.1 GH1 gene_id:2688|Hs108|chr17           ( 217)  270 68.8   3e-12
CCDS11649.1 CSH1 gene_id:1442|Hs108|chr17          ( 217)  249 64.1 7.8e-11
CCDS42369.1 CSH2 gene_id:1443|Hs108|chr17          ( 217)  249 64.1 7.8e-11


>>CCDS4548.1 PRL gene_id:5617|Hs108|chr6                  (227 aa)
 initn: 1513 init1: 1513 opt: 1513  Z-score: 1832.7  bits: 346.3 E(32554): 9.3e-96
Smith-Waterman score: 1513; 100.0% identity (100.0% similar) in 227 aa overlap (1-227:1-227)

               10        20        30        40        50        60
pF1KB6 MNIKGSPWKGSLLLLLVSNLLLCQSVAPLPICPGGAARCQVTLRDLFDRAVVLSHYIHNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MNIKGSPWKGSLLLLLVSNLLLCQSVAPLPICPGGAARCQVTLRDLFDRAVVLSHYIHNL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 SSEMFSEFDKRYTHGRGFITKAINSCHTSSLATPEDKEQAQQMNQKDFLSLIVSILRSWN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 SSEMFSEFDKRYTHGRGFITKAINSCHTSSLATPEDKEQAQQMNQKDFLSLIVSILRSWN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 EPLYHLVTEVRGMQEAPEAILSKAVEIEEQTKRLLEGMELIVSQVHPETKENEIYPVWSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 EPLYHLVTEVRGMQEAPEAILSKAVEIEEQTKRLLEGMELIVSQVHPETKENEIYPVWSG
              130       140       150       160       170       180

              190       200       210       220       
pF1KB6 LPSLQMADEESRLSAYYNLLHCLRRDSHKIDNYLKLLKCRIIHNNNC
       :::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LPSLQMADEESRLSAYYNLLHCLRRDSHKIDNYLKLLKCRIIHNNNC
              190       200       210       220       

>>CCDS11653.1 GH1 gene_id:2688|Hs108|chr17                (217 aa)
 initn: 186 init1: 102 opt: 270  Z-score: 333.3  bits: 68.8 E(32554): 3e-12
Smith-Waterman score: 270; 25.4% identity (60.7% similar) in 224 aa overlap (10-227:4-215)

               10        20        30        40        50        60
pF1KB6 MNIKGSPWKGSLLLLLVSNLLLCQSVAPLPICPGGAARCQVTLRDLFDRAVVLSHYIHNL
                ::   ::..  :::     ::    :.:   . :  ::: :.. .: .:.:
CCDS11       MATGSRTSLLLAFGLLC-----LPWLQEGSAFPTIPLSRLFDNAMLRAHRLHQL
                     10             20        30        40         

               70           80         90       100       110      
pF1KB6 SSEMFSEFDKRYT---HGRGFITKAINS-CHTSSLATPEDKEQAQQMNQKDFLSLIVSIL
       . . ..::.. :    .  .:. .  .: : . :. :: ..:..:: .. ..: . . ..
CCDS11 AFDTYQEFEEAYIPKEQKYSFLQNPQTSLCFSESIPTPSNREETQQKSNLELLRISLLLI
      50        60        70        80        90       100         

        120       130       140       150       160        170     
pF1KB6 RSWNEPLYHLVTEVRGMQEAPEAILSKAVEIEEQTKRLLEGMELIVSQVHPET-KENEIY
       .:: ::.  :    :..     .  ..  .. .  : : ::.. ......  . . ..:.
CCDS11 QSWLEPVQFL----RSVFANSLVYGASDSNVYDLLKDLEEGIQTLMGRLEDGSPRTGQIF
     110           120       130       140       150       160     

          180       190       200       210       220         
pF1KB6 P-VWSGLPSLQMADEESRLSAYYNLLHCLRRDSHKIDNYLKLLKCRIIHNNNC  
         ..: . . .  :.   :   :.::.:.:.:  :....:....:: .... :  
CCDS11 KQTYSKFDTNSHNDDA--LLKNYGLLYCFRKDMDKVETFLRIVQCRSVEGS-CGF
         170       180         190       200       210        

>>CCDS11649.1 CSH1 gene_id:1442|Hs108|chr17               (217 aa)
 initn: 174 init1:  96 opt: 249  Z-score: 307.9  bits: 64.1 E(32554): 7.8e-11
Smith-Waterman score: 249; 25.0% identity (60.3% similar) in 224 aa overlap (10-227:4-215)

               10        20        30        40        50        60
pF1KB6 MNIKGSPWKGSLLLLLVSNLLLCQSVAPLPICPGGAARCQVTLRDLFDRAVVLSHYIHNL
                ::   ::..  :::     ::    ..:   : :  :::.:.. .:  :.:
CCDS11       MAPGSRTSLLLAFALLC-----LPWLQEAGAVQTVPLSRLFDHAMLQAHRAHQL
                     10             20        30        40         

               70           80         90       100       110      
pF1KB6 SSEMFSEFDKRYT---HGRGFITKAINS-CHTSSLATPEDKEQAQQMNQKDFLSLIVSIL
       . . ..::.. :    .  .:.  . .: : ..:. :: . :..:: .. ..: . . ..
CCDS11 AIDTYQEFEETYIPKDQKYSFLHDSQTSFCFSDSIPTPSNMEETQQKSNLELLRISLLLI
      50        60        70        80        90       100         

        120       130       140       150       160       170      
pF1KB6 RSWNEPLYHLVTEVRGMQEAPEAILSKAVEIEEQTKRLLEGMELIVSQVHPETKENE--I
       .:: ::.  :    :.:     .  ..  .  .  : : ::.. ......  ....   .
CCDS11 ESWLEPVRFL----RSMFANNLVYDTSDSDDYHLLKDLEEGIQTLMGRLEDGSRRTGQIL
     110           120       130       140       150       160     

          180       190       200       210       220         
pF1KB6 YPVWSGLPSLQMADEESRLSAYYNLLHCLRRDSHKIDNYLKLLKCRIIHNNNC  
         ..: . .   . ... :   :.::.:.:.:  :....:....:: .... :  
CCDS11 KQTYSKFDT--NSHNHDALLKNYGLLYCFRKDMDKVETFLRMVQCRSVEGS-CGF
         170         180       190       200       210        

>>CCDS42369.1 CSH2 gene_id:1443|Hs108|chr17               (217 aa)
 initn: 174 init1:  96 opt: 249  Z-score: 307.9  bits: 64.1 E(32554): 7.8e-11
Smith-Waterman score: 249; 25.0% identity (60.3% similar) in 224 aa overlap (10-227:4-215)

               10        20        30        40        50        60
pF1KB6 MNIKGSPWKGSLLLLLVSNLLLCQSVAPLPICPGGAARCQVTLRDLFDRAVVLSHYIHNL
                ::   ::..  :::     ::    ..:   : :  :::.:.. .:  :.:
CCDS42       MAAGSRTSLLLAFALLC-----LPWLQEAGAVQTVPLSRLFDHAMLQAHRAHQL
                     10             20        30        40         

               70           80         90       100       110      
pF1KB6 SSEMFSEFDKRYT---HGRGFITKAINS-CHTSSLATPEDKEQAQQMNQKDFLSLIVSIL
       . . ..::.. :    .  .:.  . .: : ..:. :: . :..:: .. ..: . . ..
CCDS42 AIDTYQEFEETYIPKDQKYSFLHDSQTSFCFSDSIPTPSNMEETQQKSNLELLRISLLLI
      50        60        70        80        90       100         

        120       130       140       150       160       170      
pF1KB6 RSWNEPLYHLVTEVRGMQEAPEAILSKAVEIEEQTKRLLEGMELIVSQVHPETKENE--I
       .:: ::.  :    :.:     .  ..  .  .  : : ::.. ......  ....   .
CCDS42 ESWLEPVRFL----RSMFANNLVYDTSDSDDYHLLKDLEEGIQTLMGRLEDGSRRTGQIL
     110           120       130       140       150       160     

          180       190       200       210       220         
pF1KB6 YPVWSGLPSLQMADEESRLSAYYNLLHCLRRDSHKIDNYLKLLKCRIIHNNNC  
         ..: . .   . ... :   :.::.:.:.:  :....:....:: .... :  
CCDS42 KQTYSKFDT--NSHNHDALLKNYGLLYCFRKDMDKVETFLRMVQCRSVEGS-CGF
         170         180       190       200       210        




227 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 02:44:54 2016 done: Sat Nov  5 02:44:54 2016
 Total Scan time:  2.240 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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