Result of FASTA (omim) for pF1KB6103
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6103, 577 aa
  1>>>pF1KB6103 577 - 577 aa - 577 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.5882+/-0.000468; mu= 7.4485+/- 0.029
 mean_var=118.9622+/-23.815, 0's: 0 Z-trim(111.6): 32  B-trim: 64 in 1/50
 Lambda= 0.117590
 statistics sampled from 20193 (20214) to 20193 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.584), E-opt: 0.2 (0.237), width:  16
 Scan time:  8.440

The best scores are:                                      opt bits E(85289)
XP_006712618 (OMIM: 601182) PREDICTED: origin reco ( 577) 3717 642.4 1.2e-183
NP_006181 (OMIM: 601182) origin recognition comple ( 577) 3717 642.4 1.2e-183
XP_011509554 (OMIM: 601182) PREDICTED: origin reco ( 597) 3016 523.5 7.8e-148
XP_011509555 (OMIM: 601182) PREDICTED: origin reco ( 597) 3016 523.5 7.8e-148


>>XP_006712618 (OMIM: 601182) PREDICTED: origin recognit  (577 aa)
 initn: 3717 init1: 3717 opt: 3717  Z-score: 3418.1  bits: 642.4 E(85289): 1.2e-183
Smith-Waterman score: 3717; 100.0% identity (100.0% similar) in 577 aa overlap (1-577:1-577)

               10        20        30        40        50        60
pF1KB6 MSKPELKEDKMLEVHFVGDDDVLNHILDREGGAKLKKERAQLLVNPKKIIKKPEYDLEED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MSKPELKEDKMLEVHFVGDDDVLNHILDREGGAKLKKERAQLLVNPKKIIKKPEYDLEED
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 DQEVLKDQNYVEIMGRDVQESLKNGSATGGGNKVYSFQNRKHSEKMAKLASELAKTPQKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 DQEVLKDQNYVEIMGRDVQESLKNGSATGGGNKVYSFQNRKHSEKMAKLASELAKTPQKS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 VSFSLKNDPEITINVPQSSKGHSASDKVQPKNNDKSEFLSTAPRSLRKRLIVPRSHSDSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 VSFSLKNDPEITINVPQSSKGHSASDKVQPKNNDKSEFLSTAPRSLRKRLIVPRSHSDSE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 SEYSASNSEDDEGVAQEHEEDTNAVIFSQKIQAQNRVVSAPVGKETPSKRMKRDKTSDLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SEYSASNSEDDEGVAQEHEEDTNAVIFSQKIQAQNRVVSAPVGKETPSKRMKRDKTSDLV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 EEYFEAHSSSKVLTSDRTLQKLKRAKLDQQTLRNLLSKVSPSFSAELKQLNQQYEKLFHK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 EEYFEAHSSSKVLTSDRTLQKLKRAKLDQQTLRNLLSKVSPSFSAELKQLNQQYEKLFHK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 WMLQLHLGFNIVLYGLGSKRDLLERFRTTMLQDSIHVVINGFFPGISVKSVLNSITEEVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 WMLQLHLGFNIVLYGLGSKRDLLERFRTTMLQDSIHVVINGFFPGISVKSVLNSITEEVL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB6 DHMGTFRSILDQLDWIVNKFKEDSSLELFLLIHNLDSQMLRGEKSQQIIGQLSSLHNIYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 DHMGTFRSILDQLDWIVNKFKEDSSLELFLLIHNLDSQMLRGEKSQQIIGQLSSLHNIYL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB6 IASIDHLNAPLMWDHAKQSLFNWLWYETTTYSPYTEETSYENSLLVKQSGSLPLSSLTHV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 IASIDHLNAPLMWDHAKQSLFNWLWYETTTYSPYTEETSYENSLLVKQSGSLPLSSLTHV
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB6 LRSLTPNARGIFRLLIKYQLDNQDNPSYIGLSFQDFYQQCREAFLVNSDLTLRAQLTEFR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LRSLTPNARGIFRLLIKYQLDNQDNPSYIGLSFQDFYQQCREAFLVNSDLTLRAQLTEFR
              490       500       510       520       530       540

              550       560       570       
pF1KB6 DHKLIRTKKGTDGVEYLLIPVDNGTLTDFLEKEEEEA
       :::::::::::::::::::::::::::::::::::::
XP_006 DHKLIRTKKGTDGVEYLLIPVDNGTLTDFLEKEEEEA
              550       560       570       

>>NP_006181 (OMIM: 601182) origin recognition complex su  (577 aa)
 initn: 3717 init1: 3717 opt: 3717  Z-score: 3418.1  bits: 642.4 E(85289): 1.2e-183
Smith-Waterman score: 3717; 100.0% identity (100.0% similar) in 577 aa overlap (1-577:1-577)

               10        20        30        40        50        60
pF1KB6 MSKPELKEDKMLEVHFVGDDDVLNHILDREGGAKLKKERAQLLVNPKKIIKKPEYDLEED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MSKPELKEDKMLEVHFVGDDDVLNHILDREGGAKLKKERAQLLVNPKKIIKKPEYDLEED
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 DQEVLKDQNYVEIMGRDVQESLKNGSATGGGNKVYSFQNRKHSEKMAKLASELAKTPQKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 DQEVLKDQNYVEIMGRDVQESLKNGSATGGGNKVYSFQNRKHSEKMAKLASELAKTPQKS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 VSFSLKNDPEITINVPQSSKGHSASDKVQPKNNDKSEFLSTAPRSLRKRLIVPRSHSDSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 VSFSLKNDPEITINVPQSSKGHSASDKVQPKNNDKSEFLSTAPRSLRKRLIVPRSHSDSE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 SEYSASNSEDDEGVAQEHEEDTNAVIFSQKIQAQNRVVSAPVGKETPSKRMKRDKTSDLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 SEYSASNSEDDEGVAQEHEEDTNAVIFSQKIQAQNRVVSAPVGKETPSKRMKRDKTSDLV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 EEYFEAHSSSKVLTSDRTLQKLKRAKLDQQTLRNLLSKVSPSFSAELKQLNQQYEKLFHK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 EEYFEAHSSSKVLTSDRTLQKLKRAKLDQQTLRNLLSKVSPSFSAELKQLNQQYEKLFHK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 WMLQLHLGFNIVLYGLGSKRDLLERFRTTMLQDSIHVVINGFFPGISVKSVLNSITEEVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 WMLQLHLGFNIVLYGLGSKRDLLERFRTTMLQDSIHVVINGFFPGISVKSVLNSITEEVL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB6 DHMGTFRSILDQLDWIVNKFKEDSSLELFLLIHNLDSQMLRGEKSQQIIGQLSSLHNIYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 DHMGTFRSILDQLDWIVNKFKEDSSLELFLLIHNLDSQMLRGEKSQQIIGQLSSLHNIYL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB6 IASIDHLNAPLMWDHAKQSLFNWLWYETTTYSPYTEETSYENSLLVKQSGSLPLSSLTHV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 IASIDHLNAPLMWDHAKQSLFNWLWYETTTYSPYTEETSYENSLLVKQSGSLPLSSLTHV
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB6 LRSLTPNARGIFRLLIKYQLDNQDNPSYIGLSFQDFYQQCREAFLVNSDLTLRAQLTEFR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 LRSLTPNARGIFRLLIKYQLDNQDNPSYIGLSFQDFYQQCREAFLVNSDLTLRAQLTEFR
              490       500       510       520       530       540

              550       560       570       
pF1KB6 DHKLIRTKKGTDGVEYLLIPVDNGTLTDFLEKEEEEA
       :::::::::::::::::::::::::::::::::::::
NP_006 DHKLIRTKKGTDGVEYLLIPVDNGTLTDFLEKEEEEA
              550       560       570       

>>XP_011509554 (OMIM: 601182) PREDICTED: origin recognit  (597 aa)
 initn: 3703 init1: 3007 opt: 3016  Z-score: 2775.1  bits: 523.5 E(85289): 7.8e-148
Smith-Waterman score: 3667; 96.6% identity (96.6% similar) in 597 aa overlap (1-577:1-597)

               10        20        30        40        50        60
pF1KB6 MSKPELKEDKMLEVHFVGDDDVLNHILDREGGAKLKKERAQLLVNPKKIIKKPEYDLEED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSKPELKEDKMLEVHFVGDDDVLNHILDREGGAKLKKERAQLLVNPKKIIKKPEYDLEED
               10        20        30        40        50        60

               70        80        90       100                    
pF1KB6 DQEVLKDQNYVEIMGRDVQESLKNGSATGGGNKVYSFQNRKHSEKMAKL-----------
       :::::::::::::::::::::::::::::::::::::::::::::::::           
XP_011 DQEVLKDQNYVEIMGRDVQESLKNGSATGGGNKVYSFQNRKHSEKMAKLDLTFWPFFLTP
               70        80        90       100       110       120

              110       120       130       140       150       160
pF1KB6 ---------ASELAKTPQKSVSFSLKNDPEITINVPQSSKGHSASDKVQPKNNDKSEFLS
                :::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HQRCASTIYASELAKTPQKSVSFSLKNDPEITINVPQSSKGHSASDKVQPKNNDKSEFLS
              130       140       150       160       170       180

              170       180       190       200       210       220
pF1KB6 TAPRSLRKRLIVPRSHSDSESEYSASNSEDDEGVAQEHEEDTNAVIFSQKIQAQNRVVSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TAPRSLRKRLIVPRSHSDSESEYSASNSEDDEGVAQEHEEDTNAVIFSQKIQAQNRVVSA
              190       200       210       220       230       240

              230       240       250       260       270       280
pF1KB6 PVGKETPSKRMKRDKTSDLVEEYFEAHSSSKVLTSDRTLQKLKRAKLDQQTLRNLLSKVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PVGKETPSKRMKRDKTSDLVEEYFEAHSSSKVLTSDRTLQKLKRAKLDQQTLRNLLSKVS
              250       260       270       280       290       300

              290       300       310       320       330       340
pF1KB6 PSFSAELKQLNQQYEKLFHKWMLQLHLGFNIVLYGLGSKRDLLERFRTTMLQDSIHVVIN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PSFSAELKQLNQQYEKLFHKWMLQLHLGFNIVLYGLGSKRDLLERFRTTMLQDSIHVVIN
              310       320       330       340       350       360

              350       360       370       380       390       400
pF1KB6 GFFPGISVKSVLNSITEEVLDHMGTFRSILDQLDWIVNKFKEDSSLELFLLIHNLDSQML
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GFFPGISVKSVLNSITEEVLDHMGTFRSILDQLDWIVNKFKEDSSLELFLLIHNLDSQML
              370       380       390       400       410       420

              410       420       430       440       450       460
pF1KB6 RGEKSQQIIGQLSSLHNIYLIASIDHLNAPLMWDHAKQSLFNWLWYETTTYSPYTEETSY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RGEKSQQIIGQLSSLHNIYLIASIDHLNAPLMWDHAKQSLFNWLWYETTTYSPYTEETSY
              430       440       450       460       470       480

              470       480       490       500       510       520
pF1KB6 ENSLLVKQSGSLPLSSLTHVLRSLTPNARGIFRLLIKYQLDNQDNPSYIGLSFQDFYQQC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ENSLLVKQSGSLPLSSLTHVLRSLTPNARGIFRLLIKYQLDNQDNPSYIGLSFQDFYQQC
              490       500       510       520       530       540

              530       540       550       560       570       
pF1KB6 REAFLVNSDLTLRAQLTEFRDHKLIRTKKGTDGVEYLLIPVDNGTLTDFLEKEEEEA
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 REAFLVNSDLTLRAQLTEFRDHKLIRTKKGTDGVEYLLIPVDNGTLTDFLEKEEEEA
              550       560       570       580       590       

>>XP_011509555 (OMIM: 601182) PREDICTED: origin recognit  (597 aa)
 initn: 3703 init1: 3007 opt: 3016  Z-score: 2775.1  bits: 523.5 E(85289): 7.8e-148
Smith-Waterman score: 3667; 96.6% identity (96.6% similar) in 597 aa overlap (1-577:1-597)

               10        20        30        40        50        60
pF1KB6 MSKPELKEDKMLEVHFVGDDDVLNHILDREGGAKLKKERAQLLVNPKKIIKKPEYDLEED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSKPELKEDKMLEVHFVGDDDVLNHILDREGGAKLKKERAQLLVNPKKIIKKPEYDLEED
               10        20        30        40        50        60

               70        80        90       100                    
pF1KB6 DQEVLKDQNYVEIMGRDVQESLKNGSATGGGNKVYSFQNRKHSEKMAKL-----------
       :::::::::::::::::::::::::::::::::::::::::::::::::           
XP_011 DQEVLKDQNYVEIMGRDVQESLKNGSATGGGNKVYSFQNRKHSEKMAKLDLTFWPFFLTP
               70        80        90       100       110       120

              110       120       130       140       150       160
pF1KB6 ---------ASELAKTPQKSVSFSLKNDPEITINVPQSSKGHSASDKVQPKNNDKSEFLS
                :::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HQRCASTIYASELAKTPQKSVSFSLKNDPEITINVPQSSKGHSASDKVQPKNNDKSEFLS
              130       140       150       160       170       180

              170       180       190       200       210       220
pF1KB6 TAPRSLRKRLIVPRSHSDSESEYSASNSEDDEGVAQEHEEDTNAVIFSQKIQAQNRVVSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TAPRSLRKRLIVPRSHSDSESEYSASNSEDDEGVAQEHEEDTNAVIFSQKIQAQNRVVSA
              190       200       210       220       230       240

              230       240       250       260       270       280
pF1KB6 PVGKETPSKRMKRDKTSDLVEEYFEAHSSSKVLTSDRTLQKLKRAKLDQQTLRNLLSKVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PVGKETPSKRMKRDKTSDLVEEYFEAHSSSKVLTSDRTLQKLKRAKLDQQTLRNLLSKVS
              250       260       270       280       290       300

              290       300       310       320       330       340
pF1KB6 PSFSAELKQLNQQYEKLFHKWMLQLHLGFNIVLYGLGSKRDLLERFRTTMLQDSIHVVIN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PSFSAELKQLNQQYEKLFHKWMLQLHLGFNIVLYGLGSKRDLLERFRTTMLQDSIHVVIN
              310       320       330       340       350       360

              350       360       370       380       390       400
pF1KB6 GFFPGISVKSVLNSITEEVLDHMGTFRSILDQLDWIVNKFKEDSSLELFLLIHNLDSQML
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GFFPGISVKSVLNSITEEVLDHMGTFRSILDQLDWIVNKFKEDSSLELFLLIHNLDSQML
              370       380       390       400       410       420

              410       420       430       440       450       460
pF1KB6 RGEKSQQIIGQLSSLHNIYLIASIDHLNAPLMWDHAKQSLFNWLWYETTTYSPYTEETSY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RGEKSQQIIGQLSSLHNIYLIASIDHLNAPLMWDHAKQSLFNWLWYETTTYSPYTEETSY
              430       440       450       460       470       480

              470       480       490       500       510       520
pF1KB6 ENSLLVKQSGSLPLSSLTHVLRSLTPNARGIFRLLIKYQLDNQDNPSYIGLSFQDFYQQC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ENSLLVKQSGSLPLSSLTHVLRSLTPNARGIFRLLIKYQLDNQDNPSYIGLSFQDFYQQC
              490       500       510       520       530       540

              530       540       550       560       570       
pF1KB6 REAFLVNSDLTLRAQLTEFRDHKLIRTKKGTDGVEYLLIPVDNGTLTDFLEKEEEEA
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 REAFLVNSDLTLRAQLTEFRDHKLIRTKKGTDGVEYLLIPVDNGTLTDFLEKEEEEA
              550       560       570       580       590       




577 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 08:14:21 2016 done: Sat Nov  5 08:14:22 2016
 Total Scan time:  8.440 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]
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