GENSCAN 1.0	Date run:  7-Nov-116	Time: 01:26:49

Sequence gi568815596r:105261286_105486516 : 225231 bp : 43.45% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.15 Intr -   8420   7987  434  0  2   60  115   683 0.669  61.57
 1.14 Intr -  11729  11570  160  2  1   98   85   214 0.997  21.66
 1.13 Intr -  12405  12259  147  0  0  103   99   107 0.999  13.73
 1.12 Intr -  14418  14275  144  0  0   92   68   233 0.999  22.18
 1.11 Intr -  16386  16329   58  2  1   89  109    18 0.998   2.89
 1.10 Intr -  19438  19097  342  0  0   24   87   509 0.937  38.95
 1.09 Intr -  23113  23031   83  1  2  105   91    59 0.728   6.34
 1.08 Intr -  35225  35071  155  0  2   84   72    80 0.896   5.79
 1.07 Intr -  37420  37226  195  2  0   97   73   229 0.950  21.69
 1.06 Intr -  38277  38214   64  0  1   30   72    38 0.016  -5.31
 1.05 Intr -  47033  46198  836  0  2  105   54  1271 0.008 116.51
 1.04 Intr -  62025  62007   19  0  1  107   90    29 0.004   1.18
 1.03 Intr -  67567  67377  191  2  2   50   45   158 0.024   7.00
 1.02 Intr -  68469  68340  130  0  1   54  117    65 0.915   6.27
 1.01 Init -  68994  68932   63  0  0  109   88    75 0.996   8.81
 1.00 Prom -  70642  70603   40                              -7.46

 2.00 Prom +  72002  72041   40                              -4.96
 2.01 Init +  76189  76445  257  0  2   83   94   172 0.257  12.00
 2.02 Intr +  81563  81938  376  2  1   34  115   145 0.451   6.82
 2.03 Term +  95983  95991    9  0  0  135   28     0 0.030  -3.11
 2.04 PlyA +  96295  96300    6                               1.05

 3.09 PlyA -  97358  97353    6                               1.05
 3.08 Term - 100149  99998  152  1  2   94   38   153 0.933   8.97
 3.07 Intr - 102186 102000  187  0  1  123  101   252 0.999  29.26
 3.06 Intr - 106454 106285  170  0  2   63   65   238 0.808  18.67
 3.05 Intr - 112448 112274  175  2  1  122   71   252 0.990  26.41
 3.04 Intr - 116524 116415  110  2  2   95   78    73 0.938   7.00
 3.03 Intr - 116832 116711  122  2  2   56   86    55 0.766   2.24
 3.02 Intr - 117272 117095  178  0  1   63   59    66 0.677   0.18
 3.01 Init - 118445 118361   85  2  1   73   98   -23 0.329  -1.66
 3.00 Prom - 119524 119485   40                              -3.66

 4.03 PlyA - 121407 121402    6                               1.05
 4.02 Term - 124430 124236  195  2  0   41   42   145 0.670   2.61
 4.01 Init - 125231 125076  156  2  0   82   77   341 0.634  32.31
 4.00 Prom - 126367 126328   40                              -4.46

 5.00 Prom + 126498 126537   40                              -4.36
 5.01 Init + 126622 126750  129  0  0   57   89    95 0.349   6.65
 5.02 Intr + 137127 137297  171  2  0   42   81   124 0.933   7.24
 5.03 Intr + 138730 138801   72  0  0   85   97    11 0.525   1.30
 5.04 Intr + 149098 149131   34  0  1   88   78    14 0.041  -1.80
 5.05 Intr + 157944 157972   29  1  2   82  102    70 0.732   5.63
 5.06 Intr + 161700 161798   99  2  0  115   32    32 0.522   0.61
 5.07 Term + 162305 162487  183  1  0   77   50   105 0.899   3.14
 5.08 PlyA + 164041 164046    6                               1.05

 6.08 PlyA - 166363 166358    6                               1.05
 6.07 Term - 170672 170603   70  1  1   66   49   116 0.658   2.91
 6.06 Intr - 172987 172885  103  2  1   86   72    38 0.671   1.23
 6.05 Intr - 177231 177114  118  0  1  -29  110   132 0.319   3.74
 6.04 Intr - 180938 180842   97  1  1   92   97    43 0.290   5.61
 6.03 Intr - 192631 192518  114  0  0   65   98   111 0.518   9.36
 6.02 Intr - 206121 206058   64  1  1   52  121    29 0.243   0.38
 6.01 Init - 207952 207901   52  1  1   97  105     8 0.351   4.77

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term + 132564 132985  422  1  2   68   37   128 0.814   1.15
S.002 Init + 136220 136276   57  1  0   73  101    32 0.951   3.12


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815596r:105261286_105486516|GENSCAN_predicted_peptide_1|1007_aa
MGLVGGLRIPTMPSSPGGAPARLAAAPRDGKRRLRGRASPGAAGRSGAAGPQAAGRRGTA
GAGAGLLSDPQEASYLAAKNGGSQITQQALLHVDCTRSCGQNMSEQSLITDEVLMGKHLV
YQEGRQLREADKARADQPVDMMSIKAFTLVSAVERELLMGDKERVNIECVECCGRDLYVG
TNDCFVYHFLLEERPVPAGPATFTATKQLQRHLGFKKPVNELRAASALNRLLVLCDNSIS
LVNMLNLEPVPSGARIKGAATFALNENPVSGDPFCVEVCIISVKRRTIQMFLVYEDRVQI
VKEVSTAEQPLAVAVDGHFLCLALTTQYIIHNYSTGVSQDLFPYCSEERPPIVKRIGRQE
FLLAGPGGLGEEDAFVRLIFLGGLGDCVLKLESEIGAVQNKSSVTLGVCGKTEFSGWAMF
SLKQVNAVTLFDLQGMFATVAGISQRAPVHWSENVIGAAVSFPYVIALDDEFITVHSMLD
QQQKQTLPFKEGHILQDFEGRVIVATSKGVYILVPLPLEKQIQDLLASRRVEEALVLAKG
ARRNIPKEKFQVMYRRILQQAGFIQFAQLQFLEAKELFRSGQLDVRELISLYPFLLPTSS
SFTRSHPPLHEYADLNQLTQGDQEKMAKCKRFLMSYLNEVRSTEVANGYKEDIDTALLKL
YAEADHDSLLDLLVTENFCLLTDSAAWLEKHKKYFALGLLYHYNNQDAAAVQLWVNIVNG
DVQDSTRSDLYEYIVDFLTYCLDEELVWAYADWVLQKSEEVGVQVFTKRPLDEQQKNSFN
PDDIINCLKKYPKALVKYLEHLVIDKRLQKEEYHTHLAVLYLEEVLLQRASASGKGAEAT
ETQAKLRRLLQKSDLYRVHFLLERLQGAGLPMESAILHGKLGEHEKALHILVHELQDFAA
AEDYCLWCSEGRDPPHRQQLFHTLLAIYLHAGPTAHELAVAAVDLLNRHATEFDAAQVLQ
MLPDTWSVQLLCPFLMGAMRDSIHARRTMQVALGLARSENLIYTYDK

>gi568815596r:105261286_105486516|GENSCAN_predicted_CDS_1|3021_bp
atgggcctcgtgggagggctgcgcatcccaaccatgccttcgtctcctggtggggcaccg
gcgcgcctggcggccgccccacgtgacgggaagcggcggctgcggggtcgggccagccca
ggagccgcgggccggagcggggcggcggggccccaggccgcggggcggcgcgggacggcg
ggcgccggcgccggactgttgagtgaccctcaggaagcctcctacctggctgctaaaaat
gggggctcacagatcacacagcaggccttactgcacgtggactgcacgcgcagctgtggt
caaaacatgtctgagcagagtttaatcactgatgaagtgctcatgggcaagcaccttgtc
tatcaggaaggaaggcagctgcgggaagctgacaaagccagagcagatcagccagtagac
atgatgagcatcaaagcctttacgcttgtctctgctgtggagcgggagctgctgatgggc
gacaaggagcgcgtcaacatagagtgcgtggagtgctgcggcagggacctctacgtgggc
accaacgactgcttcgtctaccacttcctgttggaggagaggccagtgcctgctgggcca
gccacgttcactgccaccaaacagctgcagagacacttgggcttcaagaagcccgtgaac
gagctgcgtgcggcctcagcactcaacaggctgctggtgctgtgtgacaactccatcagc
ctggtcaacatgctgaacctcgagccagtgccttcgggggcccgcatcaagggggcagcc
acgtttgcactgaacgagaaccctgtgagtggggaccccttctgtgtagaagtttgcatc
atctctgtcaaacgcagaaccatccagatgtttctggtgtacgaggaccgggtgcagatc
gtcaaggaggtgtcgactgccgagcagcccctcgctgtggctgtggacggccacttcctg
tgtctggctctgaccactcagtacatcatccacaattacagcacaggcgtctcccaggac
ctgtttccctactgcagtgaggagaggccgccgatcgtcaagaggatagggagacaggag
ttcctgctggcgggccccggagggctgggtgaggaggatgcatttgtgcgcctgatcttt
ttgggtggcctcggtgactgcgtgttgaaactggagagtgagattggcgctgtgcagaat
aaatcctcagtgacattgggcgtgtgtggcaagacagagttctctggttgggcgatgttc
agccttaagcaggtaaatgcagtgaccctctttgacctccagggcatgtttgccacagtc
gcagggatatcccagcgcgcccccgtgcactggtcggagaatgtgattggggcggctgtg
tcctttccatacgtcatagcgctcgatgacgaattcatcacagtccacagcatgttggat
cagcaacagaagcagacgctgccctttaaggagggccatatcctacaggactttgaagga
agagtgatcgttgccacaagtaaaggagtttacatcttggttccattacctttggaaaaa
caaatacaggatcttctagcaagccgcagagtagaagaggctttggttttagcaaaagga
gcccggaggaacattccaaaggaaaaatttcaggtaatgtacagaaggattctgcagcag
gcgggatttatacagtttgcacaacttcagttcctggaagctaaagagctcttcagaagc
ggccagcttgatgtccgggagctgatctctctctaccccttcctgttgcccacctcctcc
tccttcacccggtcccaccctcctcttcatgagtacgcagacctgaaccagctgacccag
ggggaccaggagaagatggccaagtgcaaacgcttcctcatgagctacctgaacgaggtc
cgcagcacagaggtagcaaatggctacaaggaggacatcgacacagccttgctcaaactg
tatgcagaggctgaccacgacagcctgctggacctcctggtcactgagaacttctgtctt
ctgacggacagtgctgcctggctagagaagcacaaaaagtattttgcacttggactgctc
tatcattataataaccaagatgctgctgcagttcagttgtgggtgaacattgtgaatggc
gatgtccaggactccacacgctcagacctgtatgaatacatcgtggattttcttacctac
tgcttagacgaggaactagtgtgggcctatgctgattgggtcctgcagaaaagtgaagag
gtcggagttcaggttttcaccaagagacctttggatgaacagcagaagaacagttttaat
ccagacgacattatcaattgccttaaaaaataccctaaagcccttgtgaagtatctggaa
catcttgtgatagacaagagactgcagaaagaagagtatcacacccacttagctgtgctg
tacctggaagaggtgctgctgcagagggcctccgccagtggcaagggtgcagaggccacc
gagacgcaggccaagctgcggcggctgctccagaaatctgatttataccgagtccacttt
cttctcgagaggctgcagggagctggcctgcccatggagagcgccatcctgcacgggaag
ctgggcgagcatgagaaggcgctgcatatcctggtgcacgagctgcaggactttgcagcg
gccgaggactactgcctgtggtgctccgagggccgagacccaccccaccgccagcaactc
tttcacacgctgctggccatctacctgcatgctggccccactgcccacgagctggccgtg
gctgccgtggacctgctgaaccgccacgccaccgaatttgatgcagcccaggtgctgcag
atgctgcctgacacctggtcagtgcagctcctctgcccattcctgatgggggccatgagg
gacagcatccatgccaggaggaccatgcaggtggctctcggcctggccaggtccgaaaac
ttaatctacacctacgataag

>gi568815596r:105261286_105486516|GENSCAN_predicted_peptide_2|213_aa
MRRLRVTTHASLRPSTSLPQRFLRGALWVADWGLLATTMAGDVGGRSCTDSELLLHPELL
SQEFLLLTLEQVGRAGSEGGRVGLPRSSTVDGLRKRPLIVFDGSSTSTSIKVKKTENGDN
DRLKPPPQASFTSNAFRKLSNSSSSVSPLILSSNLPVNNKTEHNNNDAKQNHDLTHRKSP
SGPVKSPPLSPVGTTPVKLKRAAPKEEAEAMIV

>gi568815596r:105261286_105486516|GENSCAN_predicted_CDS_2|642_bp
atgcggcgactcagagtgacgacacacgcgagtctccgcccgagtacgtcacttccgcaa
cgcttccttcgcggggctttgtgggtagccgactggggtctcctggcgacgaccatggcg
ggggatgtgggcggtcgcagctgcacggactcggaactgctgctgcacccggagctgctg
tcccaggagttccttctcctcactctggagcaggttgggcgcgccggatcggagggtggg
cgggtgggccttcccaggagtagcactgtagatgggttaaggaaaagacccctcatcgta
tttgatggaagttcaacaagtacaagcataaaagtgaaaaagacagagaatggagataat
gatcgactgaagcctcccccgcaggcaagctttaccagtaatgcctttagaaaattatca
aattcctcttcgagtgtttcacccctaattttgtcttccaatttgcctgtgaacaataaa
acggaacacaataataatgacgctaaacagaaccatgacttaacgcataggaaaagtcct
tcaggccctgtgaagtcgccaccattgtcccctgttggaactactccagtgaagttaaag
agagctgctcctaaagaagaggcagaggccatgattgtataa

>gi568815596r:105261286_105486516|GENSCAN_predicted_peptide_3|392_aa
MEMRKRGPEQRVRLESELGSICKGADVPGQNLDLCMPQPEWDGEHFQVSTLHQPEGKGQH
LAGAKAKWFPGDIADQVVLRECGLHLARHADVLFPPSGDLMTGALAVVTSSGFAFLLTLE
ISLSVFLEGLLSQPDSDSWVMENILQLFPKRAVLYEVARLHRGTEDLSYKDRHWHEACFH
CSQCRNSLVDKPFAAKEDQLLCTDCYSNEYSSKCQECKKTIMPGTRKMEYKGSSWHETCF
ICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHAMQCVQCKKPITTGGVTYREQPWHKECFV
CTACRKQLSGQRFTARDDFAYCLNCFCDLYAKKCAGCTNPISGLGGTKYISFEERQWHND
CFNCKKCSLSLVGRGFLTERDDILCPDCGKDI

>gi568815596r:105261286_105486516|GENSCAN_predicted_CDS_3|1179_bp
atggagatgaggaagaggggaccagagcagagggtcaggttggaaagcgagttggggtca
atctgcaaaggggctgacgtgccaggacaaaacctggatctctgcatgccccaacccgaa
tgggatggggagcactttcaggtgtccactctacaccagcctgaagggaaagggcagcat
ctggcaggagccaaggcgaaatggttcccaggggatatagcagaccaggttgtcctgaga
gaatgcggccttcaccttgcgaggcatgctgatgtgctctttcctccatctggggactta
atgaccggagcactggctgtggtgacatctagtggctttgctttcctgttgaccttggag
atttctctctcagtttttcttgaaggtctcttgtcccagccagacagtgactcttgggtc
atggaaaacattctgcagcttttccccaaacgagcagtcctctatgaggtggctcgcctg
cacagggggacagaggacttgtcttacaaggaccggcactggcatgaagcctgtttccac
tgctcgcagtgcagaaactcactggtggacaagccctttgctgccaaggaggaccagctg
ctctgtacagactgctattccaacgagtactcatccaagtgccaggaatgcaagaagacc
atcatgccaggtacccgcaagatggagtacaagggcagcagctggcatgagacctgcttc
atctgccaccgctgccagcagccaattggaaccaagagtttcatccccaaagacaatcag
aatttctgtgtgccctgctatgagaaacaacatgccatgcagtgcgttcagtgcaaaaag
cccatcaccacgggaggggtcacttaccgggagcagccctggcacaaggagtgcttcgtg
tgcaccgcctgcaggaagcagctgtctgggcagcgcttcacagctcgcgatgactttgcc
tactgcctgaactgcttctgtgacttgtatgccaagaagtgtgctgggtgcaccaacccc
atcagcggacttggtggcacaaaatacatctcctttgaggaacggcagtggcataacgac
tgctttaactgtaagaagtgctccctctcactggtggggcgtggcttcctcacagagagg
gacgacatcctgtgccccgactgtgggaaagacatctga

>gi568815596r:105261286_105486516|GENSCAN_predicted_peptide_4|116_aa
MTERFDCHHCNESLFGKKYILREESPYCVVCFETLFANTCEECGKPIGCDCKTLVPTWIA
EGHPGGPIHSSELSDTFTRKRLLKHSSETPHVAVILSAVKLATKWDSFGISKGIPN

>gi568815596r:105261286_105486516|GENSCAN_predicted_CDS_4|351_bp
atgactgagcgctttgactgccaccattgcaacgaatctctctttggcaagaagtacatc
ctgcgggaggagagcccctactgcgtggtgtgctttgagaccctgttcgccaacacctgc
gaggagtgtgggaagcccatcggctgtgactgcaagactcttgttccaacctggattgct
gaaggacaccctgggggacccatccatagctctgaactctctgataccttcacccgcaaa
cggcttctaaaacactccagtgaaacccctcatgtggctgtcatcctgagtgccgtgaaa
ctggctacaaaatgggattcctttggcatctctaaaggaattcccaactga

>gi568815596r:105261286_105486516|GENSCAN_predicted_peptide_5|238_aa
MKYYAATKKNEIMSFAGTRMELEAIILSKLMQEQKAKYCMFSLGNGPDSPAQTTVPGQPA
RESGLEAGGQRHLPAAAGWDPRPAFTQARPVPARMAVPHLASWVSIMESQNLRIKGLHHL
SFHSRVHDHSIGSWRGFSELVVFGYLRRHGNPLQLPHSGKQAEDACIGPDSGSGIKRQVF
TSITLPDFKLYYKATVTKTAWYWYQNRYIDQWNITEASETTPHIYNHLIFDKPDKQQK

>gi568815596r:105261286_105486516|GENSCAN_predicted_CDS_5|717_bp
atgaaatactatgcagccacaaaaaagaatgagatcatgtcttttgcaggaacacggatg
gagctggaggccattatccttagcaaactaatgcaggaacagaaagccaaatactgcatg
ttctcacttggaaatggcccggactcccccgcgcagaccaccgtgccaggacagcccgct
cgggagtcgggcctggaagcaggcggacagcgtcacctccccgcagccgccggctgggac
ccgcggccagcctttacccaggctcgcccggtccctgcccgcatggcggtgccccacctg
gcctcatgggtctccatcatggaatcacagaacttgagaataaaggggcttcatcacctt
agcttccactcgagggtccatgaccattctattggcagttggagaggtttttcggaactg
gtggtgtttggttacctcagacggcatgggaacccattacaactccctcatagtggaaag
caagctgaggatgcttgcattgggcctgactcaggaagtggtatcaagcgtcaggtattt
acttccatcacactacctgacttcaaactatattacaaggctacagtaacaaaaacagca
tggtactggtaccaaaacagatatatagaccagtggaacataacagaggcctcagaaaca
acaccacacatctacaaccatctgatctttgacaaacctgacaaacaacagaaatag

>gi568815596r:105261286_105486516|GENSCAN_predicted_peptide_6|205_aa
MGSTGNTGPVCPRGAPRVELQALFLLYPEYPDYPGTQEREVSEVSNGASPDSHHTATHGE
NLRFGIAGATYSGCTTSYRAETFWNEDLMIYFQTWQLREFLYSQLLPRKRSWLAAAQKVG
AIQPGSPPAQQLSLLIGLEDRRQNPKTTVLSDPVGIRLQLQKSNPVAICKGQHGLNDINE
CFSSSSSTSSTLAADELRQDPGLLP

>gi568815596r:105261286_105486516|GENSCAN_predicted_CDS_6|618_bp
atgggaagcactggcaacactgggcctgtttgccctcgcggagcaccccgagttgagctc
caagctctgtttcttctctaccctgagtatccagactaccctggcactcaagaaagggaa
gtctcagaagtttctaatggagcatcccctgactcccaccatactgctacccatggagag
aatttacggtttgggattgctggtgcaacgtacagcggctgcacaacaagctatagagca
gagaccttctggaatgaagatcttatgatctactttcagacatggcagctcagagaattt
ctttacagccagctcttgcccagaaagcgcagctggctggcagctgcacagaaggttggg
gccatccaaccaggcagtccgcctgcacagcagctgtccctgctcatcgggctggaggac
agaagacagaaccctaaaaccacagtactttccgatccagttggcattagacttcaattg
caaaagagcaaccctgttgccatatgcaagggacagcatggtttgaatgacataaatgaa
tgcttcagcagcagcagcagcacatcctccactctggctgctgatgagctccggcaggat
cctggcctgctgccctga