Result of FASTA (omim) for pF1KE0666
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0666, 357 aa
  1>>>pF1KE0666 357 - 357 aa - 357 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.0961+/-0.000419; mu= 7.9625+/- 0.027
 mean_var=376.6956+/-79.968, 0's: 0 Z-trim(122.6): 27  B-trim: 2051 in 1/53
 Lambda= 0.066081
 statistics sampled from 41067 (41094) to 41067 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.786), E-opt: 0.2 (0.482), width:  16
 Scan time:  9.380

The best scores are:                                      opt bits E(85289)
XP_016876139 (OMIM: 612408) PREDICTED: paraspeckle ( 393) 2391 241.6 2.3e-63
XP_011533444 (OMIM: 612408) PREDICTED: paraspeckle ( 406) 2335 236.2 9.5e-62
XP_011533443 (OMIM: 612408) PREDICTED: paraspeckle ( 409) 2335 236.2 9.5e-62
XP_011533439 (OMIM: 612408) PREDICTED: paraspeckle ( 469) 2336 236.4 9.6e-62
XP_011533442 (OMIM: 612408) PREDICTED: paraspeckle ( 417) 2335 236.3 9.6e-62
XP_011533441 (OMIM: 612408) PREDICTED: paraspeckle ( 417) 2335 236.3 9.6e-62
XP_011533440 (OMIM: 612408) PREDICTED: paraspeckle ( 447) 2335 236.3   1e-61
NP_001035879 (OMIM: 612408) paraspeckle component  ( 523) 2336 236.5   1e-61
XP_006719907 (OMIM: 612408) PREDICTED: paraspeckle ( 523) 2336 236.5   1e-61
NP_001138880 (OMIM: 300084,300967) non-POU domain- ( 471) 1655 171.5 3.4e-42
NP_001138881 (OMIM: 300084,300967) non-POU domain- ( 471) 1655 171.5 3.4e-42
NP_031389 (OMIM: 300084,300967) non-POU domain-con ( 471) 1655 171.5 3.4e-42
XP_005271172 (OMIM: 605199) PREDICTED: splicing fa ( 669) 1638 170.1 1.2e-41
XP_011540252 (OMIM: 605199) PREDICTED: splicing fa ( 679) 1638 170.1 1.3e-41
XP_016857542 (OMIM: 605199) PREDICTED: splicing fa ( 707) 1638 170.2 1.3e-41
NP_005057 (OMIM: 605199) splicing factor, proline- ( 707) 1638 170.2 1.3e-41
XP_016857543 (OMIM: 605199) PREDICTED: splicing fa ( 707) 1638 170.2 1.3e-41
XP_005271169 (OMIM: 605199) PREDICTED: splicing fa ( 707) 1638 170.2 1.3e-41
XP_005271170 (OMIM: 605199) PREDICTED: splicing fa ( 707) 1638 170.2 1.3e-41
NP_001138882 (OMIM: 300084,300967) non-POU domain- ( 382) 1427 149.6   1e-35


>>XP_016876139 (OMIM: 612408) PREDICTED: paraspeckle com  (393 aa)
 initn: 2391 init1: 2391 opt: 2391  Z-score: 1258.6  bits: 241.6 E(85289): 2.3e-63
Smith-Waterman score: 2391; 100.0% identity (100.0% similar) in 357 aa overlap (1-357:37-393)

                                             10        20        30
pF1KE0                               MALALAGEPAPPAPAPPEDHPDEEMGFTID
                                     ::::::::::::::::::::::::::::::
XP_016 LKQVRIEKNPARLRALESAVGESEPAAAAAMALALAGEPAPPAPAPPEDHPDEEMGFTID
         10        20        30        40        50        60      

               40        50        60        70        80        90
pF1KE0 IKSFLKPGEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IKSFLKPGEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLES
         70        80        90       100       110       120      

              100       110       120       130       140       150
pF1KE0 RTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAV
        130       140       150       160       170       180      

              160       170       180       190       200       210
pF1KE0 VVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPE
        190       200       210       220       230       240      

              220       230       240       250       260       270
pF1KE0 KLMQKTQQYHKEREQPPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIREAKEKLEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KLMQKTQQYHKEREQPPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIREAKEKLEA
        250       260       270       280       290       300      

              280       290       300       310       320       330
pF1KE0 EMEAARHEHQLMLMRQDLMRRQEELRRLEELRNQELQKRKQIQLRHEEEHRRREEEMIRH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EMEAARHEHQLMLMRQDLMRRQEELRRLEELRNQELQKRKQIQLRHEEEHRRREEEMIRH
        310       320       330       340       350       360      

              340       350       
pF1KE0 REQEELRRQQEGFKPNYMENGDKRKCG
       :::::::::::::::::::::::::::
XP_016 REQEELRRQQEGFKPNYMENGDKRKCG
        370       380       390   

>>XP_011533444 (OMIM: 612408) PREDICTED: paraspeckle com  (406 aa)
 initn: 2335 init1: 2335 opt: 2335  Z-score: 1229.6  bits: 236.2 E(85289): 9.5e-62
Smith-Waterman score: 2335; 100.0% identity (100.0% similar) in 350 aa overlap (1-350:37-386)

                                             10        20        30
pF1KE0                               MALALAGEPAPPAPAPPEDHPDEEMGFTID
                                     ::::::::::::::::::::::::::::::
XP_011 LKQVRIEKNPARLRALESAVGESEPAAAAAMALALAGEPAPPAPAPPEDHPDEEMGFTID
         10        20        30        40        50        60      

               40        50        60        70        80        90
pF1KE0 IKSFLKPGEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IKSFLKPGEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLES
         70        80        90       100       110       120      

              100       110       120       130       140       150
pF1KE0 RTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAV
        130       140       150       160       170       180      

              160       170       180       190       200       210
pF1KE0 VVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPE
        190       200       210       220       230       240      

              220       230       240       250       260       270
pF1KE0 KLMQKTQQYHKEREQPPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIREAKEKLEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KLMQKTQQYHKEREQPPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIREAKEKLEA
        250       260       270       280       290       300      

              280       290       300       310       320       330
pF1KE0 EMEAARHEHQLMLMRQDLMRRQEELRRLEELRNQELQKRKQIQLRHEEEHRRREEEMIRH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EMEAARHEHQLMLMRQDLMRRQEELRRLEELRNQELQKRKQIQLRHEEEHRRREEEMIRH
        310       320       330       340       350       360      

              340       350                    
pF1KE0 REQEELRRQQEGFKPNYMENGDKRKCG             
       ::::::::::::::::::::                    
XP_011 REQEELRRQQEGFKPNYMENRWGLDMLPRLGSSSPLSSSS
        370       380       390       400      

>>XP_011533443 (OMIM: 612408) PREDICTED: paraspeckle com  (409 aa)
 initn: 2335 init1: 2335 opt: 2335  Z-score: 1229.6  bits: 236.2 E(85289): 9.5e-62
Smith-Waterman score: 2335; 100.0% identity (100.0% similar) in 350 aa overlap (1-350:37-386)

                                             10        20        30
pF1KE0                               MALALAGEPAPPAPAPPEDHPDEEMGFTID
                                     ::::::::::::::::::::::::::::::
XP_011 LKQVRIEKNPARLRALESAVGESEPAAAAAMALALAGEPAPPAPAPPEDHPDEEMGFTID
         10        20        30        40        50        60      

               40        50        60        70        80        90
pF1KE0 IKSFLKPGEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IKSFLKPGEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLES
         70        80        90       100       110       120      

              100       110       120       130       140       150
pF1KE0 RTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAV
        130       140       150       160       170       180      

              160       170       180       190       200       210
pF1KE0 VVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPE
        190       200       210       220       230       240      

              220       230       240       250       260       270
pF1KE0 KLMQKTQQYHKEREQPPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIREAKEKLEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KLMQKTQQYHKEREQPPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIREAKEKLEA
        250       260       270       280       290       300      

              280       290       300       310       320       330
pF1KE0 EMEAARHEHQLMLMRQDLMRRQEELRRLEELRNQELQKRKQIQLRHEEEHRRREEEMIRH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EMEAARHEHQLMLMRQDLMRRQEELRRLEELRNQELQKRKQIQLRHEEEHRRREEEMIRH
        310       320       330       340       350       360      

              340       350                       
pF1KE0 REQEELRRQQEGFKPNYMENGDKRKCG                
       ::::::::::::::::::::                       
XP_011 REQEELRRQQEGFKPNYMENFKGRNQMVSVQLVQVMSKVDFLC
        370       380       390       400         

>>XP_011533439 (OMIM: 612408) PREDICTED: paraspeckle com  (469 aa)
 initn: 2490 init1: 2336 opt: 2336  Z-score: 1229.5  bits: 236.4 E(85289): 9.6e-62
Smith-Waterman score: 2336; 99.2% identity (99.7% similar) in 353 aa overlap (1-353:37-389)

                                             10        20        30
pF1KE0                               MALALAGEPAPPAPAPPEDHPDEEMGFTID
                                     ::::::::::::::::::::::::::::::
XP_011 LKQVRIEKNPARLRALESAVGESEPAAAAAMALALAGEPAPPAPAPPEDHPDEEMGFTID
         10        20        30        40        50        60      

               40        50        60        70        80        90
pF1KE0 IKSFLKPGEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IKSFLKPGEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLES
         70        80        90       100       110       120      

              100       110       120       130       140       150
pF1KE0 RTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAV
        130       140       150       160       170       180      

              160       170       180       190       200       210
pF1KE0 VVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPE
        190       200       210       220       230       240      

              220       230       240       250       260       270
pF1KE0 KLMQKTQQYHKEREQPPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIREAKEKLEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KLMQKTQQYHKEREQPPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIREAKEKLEA
        250       260       270       280       290       300      

              280       290       300       310       320       330
pF1KE0 EMEAARHEHQLMLMRQDLMRRQEELRRLEELRNQELQKRKQIQLRHEEEHRRREEEMIRH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EMEAARHEHQLMLMRQDLMRRQEELRRLEELRNQELQKRKQIQLRHEEEHRRREEEMIRH
        310       320       330       340       350       360      

              340       350                                        
pF1KE0 REQEELRRQQEGFKPNYMENGDKRKCG                                 
       :::::::::::::::::::: ..                                     
XP_011 REQEELRRQQEGFKPNYMENREQEMRMGDMGPRGAINMGDAFSPAPAGNQGPPPMMGMNM
        370       380       390       400       410       420      

>>XP_011533442 (OMIM: 612408) PREDICTED: paraspeckle com  (417 aa)
 initn: 2335 init1: 2335 opt: 2335  Z-score: 1229.5  bits: 236.3 E(85289): 9.6e-62
Smith-Waterman score: 2335; 100.0% identity (100.0% similar) in 350 aa overlap (1-350:37-386)

                                             10        20        30
pF1KE0                               MALALAGEPAPPAPAPPEDHPDEEMGFTID
                                     ::::::::::::::::::::::::::::::
XP_011 LKQVRIEKNPARLRALESAVGESEPAAAAAMALALAGEPAPPAPAPPEDHPDEEMGFTID
         10        20        30        40        50        60      

               40        50        60        70        80        90
pF1KE0 IKSFLKPGEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IKSFLKPGEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLES
         70        80        90       100       110       120      

              100       110       120       130       140       150
pF1KE0 RTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAV
        130       140       150       160       170       180      

              160       170       180       190       200       210
pF1KE0 VVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPE
        190       200       210       220       230       240      

              220       230       240       250       260       270
pF1KE0 KLMQKTQQYHKEREQPPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIREAKEKLEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KLMQKTQQYHKEREQPPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIREAKEKLEA
        250       260       270       280       290       300      

              280       290       300       310       320       330
pF1KE0 EMEAARHEHQLMLMRQDLMRRQEELRRLEELRNQELQKRKQIQLRHEEEHRRREEEMIRH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EMEAARHEHQLMLMRQDLMRRQEELRRLEELRNQELQKRKQIQLRHEEEHRRREEEMIRH
        310       320       330       340       350       360      

              340       350                               
pF1KE0 REQEELRRQQEGFKPNYMENGDKRKCG                        
       ::::::::::::::::::::                               
XP_011 REQEELRRQQEGFKPNYMENVYLMSFHLKWVIKENVAEVTRSSACSVIQKS
        370       380       390       400       410       

>>XP_011533441 (OMIM: 612408) PREDICTED: paraspeckle com  (417 aa)
 initn: 2335 init1: 2335 opt: 2335  Z-score: 1229.5  bits: 236.3 E(85289): 9.6e-62
Smith-Waterman score: 2335; 100.0% identity (100.0% similar) in 350 aa overlap (1-350:37-386)

                                             10        20        30
pF1KE0                               MALALAGEPAPPAPAPPEDHPDEEMGFTID
                                     ::::::::::::::::::::::::::::::
XP_011 LKQVRIEKNPARLRALESAVGESEPAAAAAMALALAGEPAPPAPAPPEDHPDEEMGFTID
         10        20        30        40        50        60      

               40        50        60        70        80        90
pF1KE0 IKSFLKPGEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IKSFLKPGEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLES
         70        80        90       100       110       120      

              100       110       120       130       140       150
pF1KE0 RTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAV
        130       140       150       160       170       180      

              160       170       180       190       200       210
pF1KE0 VVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPE
        190       200       210       220       230       240      

              220       230       240       250       260       270
pF1KE0 KLMQKTQQYHKEREQPPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIREAKEKLEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KLMQKTQQYHKEREQPPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIREAKEKLEA
        250       260       270       280       290       300      

              280       290       300       310       320       330
pF1KE0 EMEAARHEHQLMLMRQDLMRRQEELRRLEELRNQELQKRKQIQLRHEEEHRRREEEMIRH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EMEAARHEHQLMLMRQDLMRRQEELRRLEELRNQELQKRKQIQLRHEEEHRRREEEMIRH
        310       320       330       340       350       360      

              340       350                               
pF1KE0 REQEELRRQQEGFKPNYMENGDKRKCG                        
       ::::::::::::::::::::                               
XP_011 REQEELRRQQEGFKPNYMENVYLMSFHLKWVIKENVAEVTRSSACSVIQKS
        370       380       390       400       410       

>>XP_011533440 (OMIM: 612408) PREDICTED: paraspeckle com  (447 aa)
 initn: 2335 init1: 2335 opt: 2335  Z-score: 1229.2  bits: 236.3 E(85289): 1e-61
Smith-Waterman score: 2335; 100.0% identity (100.0% similar) in 350 aa overlap (1-350:37-386)

                                             10        20        30
pF1KE0                               MALALAGEPAPPAPAPPEDHPDEEMGFTID
                                     ::::::::::::::::::::::::::::::
XP_011 LKQVRIEKNPARLRALESAVGESEPAAAAAMALALAGEPAPPAPAPPEDHPDEEMGFTID
         10        20        30        40        50        60      

               40        50        60        70        80        90
pF1KE0 IKSFLKPGEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IKSFLKPGEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLES
         70        80        90       100       110       120      

              100       110       120       130       140       150
pF1KE0 RTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAV
        130       140       150       160       170       180      

              160       170       180       190       200       210
pF1KE0 VVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPE
        190       200       210       220       230       240      

              220       230       240       250       260       270
pF1KE0 KLMQKTQQYHKEREQPPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIREAKEKLEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KLMQKTQQYHKEREQPPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIREAKEKLEA
        250       260       270       280       290       300      

              280       290       300       310       320       330
pF1KE0 EMEAARHEHQLMLMRQDLMRRQEELRRLEELRNQELQKRKQIQLRHEEEHRRREEEMIRH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EMEAARHEHQLMLMRQDLMRRQEELRRLEELRNQELQKRKQIQLRHEEEHRRREEEMIRH
        310       320       330       340       350       360      

              340       350                                        
pF1KE0 REQEELRRQQEGFKPNYMENGDKRKCG                                 
       ::::::::::::::::::::                                        
XP_011 REQEELRRQQEGFKPNYMENYVCHFLITGYTSNSEVVFPSEEFMPNGAAEERILTEVGHQ
        370       380       390       400       410       420      

>>NP_001035879 (OMIM: 612408) paraspeckle component 1 [H  (523 aa)
 initn: 2478 init1: 2336 opt: 2336  Z-score: 1229.1  bits: 236.5 E(85289): 1e-61
Smith-Waterman score: 2336; 99.2% identity (99.7% similar) in 353 aa overlap (1-353:37-389)

                                             10        20        30
pF1KE0                               MALALAGEPAPPAPAPPEDHPDEEMGFTID
                                     ::::::::::::::::::::::::::::::
NP_001 LKQVRIEKNPARLRALESAVGESEPAAAAAMALALAGEPAPPAPAPPEDHPDEEMGFTID
         10        20        30        40        50        60      

               40        50        60        70        80        90
pF1KE0 IKSFLKPGEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IKSFLKPGEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLES
         70        80        90       100       110       120      

              100       110       120       130       140       150
pF1KE0 RTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAV
        130       140       150       160       170       180      

              160       170       180       190       200       210
pF1KE0 VVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPE
        190       200       210       220       230       240      

              220       230       240       250       260       270
pF1KE0 KLMQKTQQYHKEREQPPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIREAKEKLEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KLMQKTQQYHKEREQPPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIREAKEKLEA
        250       260       270       280       290       300      

              280       290       300       310       320       330
pF1KE0 EMEAARHEHQLMLMRQDLMRRQEELRRLEELRNQELQKRKQIQLRHEEEHRRREEEMIRH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EMEAARHEHQLMLMRQDLMRRQEELRRLEELRNQELQKRKQIQLRHEEEHRRREEEMIRH
        310       320       330       340       350       360      

              340       350                                        
pF1KE0 REQEELRRQQEGFKPNYMENGDKRKCG                                 
       :::::::::::::::::::: ..                                     
NP_001 REQEELRRQQEGFKPNYMENREQEMRMGDMGPRGAINMGDAFSPAPAGNQGPPPMMGMNM
        370       380       390       400       410       420      

>>XP_006719907 (OMIM: 612408) PREDICTED: paraspeckle com  (523 aa)
 initn: 2478 init1: 2336 opt: 2336  Z-score: 1229.1  bits: 236.5 E(85289): 1e-61
Smith-Waterman score: 2336; 99.2% identity (99.7% similar) in 353 aa overlap (1-353:37-389)

                                             10        20        30
pF1KE0                               MALALAGEPAPPAPAPPEDHPDEEMGFTID
                                     ::::::::::::::::::::::::::::::
XP_006 LKQVRIEKNPARLRALESAVGESEPAAAAAMALALAGEPAPPAPAPPEDHPDEEMGFTID
         10        20        30        40        50        60      

               40        50        60        70        80        90
pF1KE0 IKSFLKPGEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 IKSFLKPGEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLES
         70        80        90       100       110       120      

              100       110       120       130       140       150
pF1KE0 RTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 RTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAV
        130       140       150       160       170       180      

              160       170       180       190       200       210
pF1KE0 VVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 VVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPE
        190       200       210       220       230       240      

              220       230       240       250       260       270
pF1KE0 KLMQKTQQYHKEREQPPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIREAKEKLEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KLMQKTQQYHKEREQPPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIREAKEKLEA
        250       260       270       280       290       300      

              280       290       300       310       320       330
pF1KE0 EMEAARHEHQLMLMRQDLMRRQEELRRLEELRNQELQKRKQIQLRHEEEHRRREEEMIRH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 EMEAARHEHQLMLMRQDLMRRQEELRRLEELRNQELQKRKQIQLRHEEEHRRREEEMIRH
        310       320       330       340       350       360      

              340       350                                        
pF1KE0 REQEELRRQQEGFKPNYMENGDKRKCG                                 
       :::::::::::::::::::: ..                                     
XP_006 REQEELRRQQEGFKPNYMENREQEMRMGDMGPRGAINMGDAFSPAPAGNQGPPPMMGMNM
        370       380       390       400       410       420      

>>NP_001138880 (OMIM: 300084,300967) non-POU domain-cont  (471 aa)
 initn: 1971 init1: 1594 opt: 1655  Z-score: 878.6  bits: 171.5 E(85289): 3.4e-42
Smith-Waterman score: 1655; 71.1% identity (90.9% similar) in 339 aa overlap (9-347:37-374)

                                     10        20        30        
pF1KE0                       MALALAGEPAPPAPAPPEDHPDEEMGFTIDIKSFLKPG
                                     : :: ::  ..  ... :.:::.:.: :::
NP_001 FNLEKQNHTPRKHHQHHHQQQHHQQQQQQPPPPPIPANGQQASSQNEGLTIDLKNFRKPG
         10        20        30        40        50        60      

       40        50        60        70        80        90        
pF1KE0 EKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAK
       :::.::: :::::::: :::::....:::.::. .::::..:.::::::::.::::::::
NP_001 EKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAK
         70        80        90       100       110       120      

      100       110       120       130       140       150        
pF1KE0 AELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGR
       .:::.  :... ::.::: :.:.:::.::   :::::::.::: :: ::.:::.::::::
NP_001 VELDNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGR
        130       140       150       160       170       180      

      160       170       180       190       200       210        
pF1KE0 ATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPEKLMQKTQQ
        .:::.:::..:: :::::.::..:.::::: :::: ::::.:.:::.::::::. :.::
NP_001 PSGKGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVEPMDQLDDEEGLPEKLVIKNQQ
        190       200       210       220       230       240      

      220       230       240       250       260       270        
pF1KE0 YHKEREQPPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIREAKEKLEAEMEAARHE
       .::::::::::::::.::.::: ::::: ::::::..::::::.::.:::: ::::::::
NP_001 FHKEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQVDRNIKEAREKLEMEMEAARHE
        250       260       270       280       290       300      

      280       290       300       310       320       330        
pF1KE0 HQLMLMRQDLMRRQEELRRLEELRNQELQKRKQIQLRHEEEHRRREEEMIRHREQEELRR
       ::.::::::::::::::::.:::.:::.:::::..::.:::.::::::: :....: .::
NP_001 HQVMLMRQDLMRRQEELRRMEELHNQEVQKRKQLELRQEEERRRREEEM-RRQQEEMMRR
        310       320       330       340       350        360     

      340       350                                                
pF1KE0 QQEGFKPNYMENGDKRKCG                                         
       :::::: ..                                                   
NP_001 QQEGFKGTFPDAREQEIRMGQMAMGGAMGINNRGAMPPAPVPAGTPAPPGPATMMPDGTL
         370       380       390       400       410       420     




357 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 13:29:21 2016 done: Sat Nov  5 13:29:22 2016
 Total Scan time:  9.380 Total Display time:  0.040

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com