Result of FASTA (omim) for pF1KB7984
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7984, 324 aa
  1>>>pF1KB7984 324 - 324 aa - 324 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.1899+/-0.000325; mu= 4.6254+/- 0.021
 mean_var=194.1521+/-40.140, 0's: 0 Z-trim(121.6): 289  B-trim: 125 in 2/55
 Lambda= 0.092046
 statistics sampled from 38187 (38504) to 38187 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.774), E-opt: 0.2 (0.451), width:  16
 Scan time:  8.890

The best scores are:                                      opt bits E(85289)
NP_000316 (OMIM: 137600,180500,180550,601542,60422 ( 324) 2186 302.0 1.1e-81
NP_001191326 (OMIM: 137600,180500,180550,601542,60 ( 317) 1744 243.3 4.9e-64
NP_700475 (OMIM: 137600,180500,180550,601542,60422 ( 317) 1744 243.3 4.9e-64
NP_001191327 (OMIM: 137600,180500,180550,601542,60 ( 317) 1744 243.3 4.9e-64
NP_001191328 (OMIM: 137600,180500,180550,601542,60 ( 271) 1731 241.6 1.4e-63
NP_700476 (OMIM: 137600,180500,180550,601542,60422 ( 271) 1731 241.6 1.4e-63
XP_011530329 (OMIM: 137600,180500,180550,601542,60 ( 271) 1731 241.6 1.4e-63
NP_002644 (OMIM: 119800,186550,602149) pituitary h ( 314) 1220 173.8 4.3e-43
NP_005020 (OMIM: 107250,602669,610623) pituitary h ( 302) 1008 145.6 1.2e-34
NP_620689 (OMIM: 300004,300215,300382,300419,30835 ( 562)  387 63.3 1.3e-09
NP_008913 (OMIM: 601527,613456) ALX homeobox prote ( 326)  382 62.5 1.4e-09
XP_011537084 (OMIM: 601527,613456) PREDICTED: ALX  ( 231)  377 61.7 1.7e-09
NP_006483 (OMIM: 136760,606014) homeobox protein a ( 343)  353 58.7 2.1e-08
NP_115485 (OMIM: 604529) homeobox protein orthoped ( 325)  351 58.4 2.4e-08
NP_001128726 (OMIM: 167410,268220) paired box prot ( 505)  354 58.9 2.5e-08
NP_039236 (OMIM: 167410,268220) paired box protein ( 518)  354 58.9 2.6e-08
NP_002575 (OMIM: 167410,268220) paired box protein ( 520)  354 58.9 2.6e-08
NP_038463 (OMIM: 601881,611038) retinal homeobox p ( 346)  346 57.7   4e-08
NP_068745 (OMIM: 605420,609597,613451,615529) home ( 411)  347 57.9 4.2e-08
NP_852126 (OMIM: 122880,148820,193500,268220,60659 ( 403)  324 54.9 3.4e-07
NP_852125 (OMIM: 122880,148820,193500,268220,60659 ( 407)  324 54.9 3.4e-07
NP_852122 (OMIM: 122880,148820,193500,268220,60659 ( 479)  323 54.8 4.2e-07
NP_001120838 (OMIM: 122880,148820,193500,268220,60 ( 483)  323 54.8 4.3e-07
NP_852123 (OMIM: 122880,148820,193500,268220,60659 ( 484)  323 54.8 4.3e-07
NP_852124 (OMIM: 122880,148820,193500,268220,60659 ( 505)  323 54.8 4.4e-07
NP_703149 (OMIM: 300154) homeobox protein ESX1 [Ho ( 406)  316 53.8 7.1e-07
NP_001257453 (OMIM: 600037,610125,613986) homeobox ( 289)  309 52.8 1.1e-06
NP_758840 (OMIM: 600037,610125,613986) homeobox pr ( 289)  309 52.8 1.1e-06
NP_001257452 (OMIM: 600037,610125,613986) homeobox ( 289)  309 52.8 1.1e-06
XP_006711451 (OMIM: 167420,202650) PREDICTED: pair ( 198)  303 51.8 1.4e-06
NP_073207 (OMIM: 167420,202650) paired mesoderm ho ( 245)  303 51.9 1.6e-06
NP_008833 (OMIM: 167420,202650) paired mesoderm ho ( 217)  300 51.5 1.9e-06
NP_068374 (OMIM: 600037,610125,613986) homeobox pr ( 297)  300 51.6 2.5e-06
NP_001257454 (OMIM: 600037,610125,613986) homeobox ( 297)  300 51.6 2.5e-06
NP_003915 (OMIM: 209880,603851,613013) paired meso ( 314)  296 51.1 3.7e-06
NP_057391 (OMIM: 604675) paired mesoderm homeobox  ( 253)  294 50.7 3.8e-06
NP_671725 (OMIM: 607410) diencephalon/mesencephalo ( 382)  295 51.0 4.7e-06
XP_011538970 (OMIM: 607410) PREDICTED: diencephalo ( 377)  294 50.9 5.1e-06
NP_757379 (OMIM: 607410) diencephalon/mesencephalo ( 377)  294 50.9 5.1e-06
XP_016855778 (OMIM: 607410) PREDICTED: diencephalo ( 377)  294 50.9 5.1e-06
NP_001263380 (OMIM: 606701) dorsal root ganglia ho ( 263)  291 50.3 5.1e-06
XP_016883326 (OMIM: 122000,148300,605020,614195) P ( 280)  288 50.0 7.1e-06
NP_878314 (OMIM: 142993,610092,610093) visual syst ( 361)  290 50.3 7.2e-06
NP_001243201 (OMIM: 122000,148300,605020,614195) v ( 301)  288 50.0 7.5e-06
XP_016870292 (OMIM: 604675) PREDICTED: paired meso ( 193)  284 49.3 7.8e-06
NP_055403 (OMIM: 122000,148300,605020,614195) visu ( 365)  288 50.0 8.7e-06
NP_055377 (OMIM: 600036) homeobox protein OTX1 [Ho ( 354)  285 49.6 1.1e-05
NP_001186699 (OMIM: 600036) homeobox protein OTX1  ( 354)  285 49.6 1.1e-05
NP_001297089 (OMIM: 106210,120430,136520,148190,16 ( 286)  283 49.3 1.1e-05
NP_001297090 (OMIM: 106210,120430,136520,148190,16 ( 286)  283 49.3 1.1e-05


>>NP_000316 (OMIM: 137600,180500,180550,601542,604229) p  (324 aa)
 initn: 2186 init1: 2186 opt: 2186  Z-score: 1587.7  bits: 302.0 E(85289): 1.1e-81
Smith-Waterman score: 2186; 100.0% identity (100.0% similar) in 324 aa overlap (1-324:1-324)

               10        20        30        40        50        60
pF1KB7 MNCMKGPLHLEHRAAGTKLSAVSSSSCHHPQPLAMASVLAPGQPRSLDSSKHRLEVHTIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MNCMKGPLHLEHRAAGTKLSAVSSSSCHHPQPLAMASVLAPGQPRSLDSSKHRLEVHTIS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 DTSSPEAAEKDKSQQGKNEDVGAEDPSKKKRQRRQRTHFTSQQLQELEATFQRNRYPDMS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 DTSSPEAAEKDKSQQGKNEDVGAEDPSKKKRQRRQRTHFTSQQLQELEATFQRNRYPDMS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 TREEIAVWTNLTEARVRVWFKNRRAKWRKRERNQQAELCKNGFGPQFNGLMQPYDDMYPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 TREEIAVWTNLTEARVRVWFKNRRAKWRKRERNQQAELCKNGFGPQFNGLMQPYDDMYPG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 YSYNNWAAKGLTSASLSTKSFPFFNSMNVNPLSSQSMFSPPNSISSMSMSSSMVPSAVTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 YSYNNWAAKGLTSASLSTKSFPFFNSMNVNPLSSQSMFSPPNSISSMSMSSSMVPSAVTG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 VPGSSLNSLNNLNNLSSPSLNSAVPTPACPYAPPTPPYVYRDTCNSSLASLRLKAKQHSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 VPGSSLNSLNNLNNLSSPSLNSAVPTPACPYAPPTPPYVYRDTCNSSLASLRLKAKQHSS
              250       260       270       280       290       300

              310       320    
pF1KB7 FGYASVQNPASNLSACQYAVDRPV
       ::::::::::::::::::::::::
NP_000 FGYASVQNPASNLSACQYAVDRPV
              310       320    

>>NP_001191326 (OMIM: 137600,180500,180550,601542,604229  (317 aa)
 initn: 1742 init1: 1742 opt: 1744  Z-score: 1270.7  bits: 243.3 E(85289): 4.9e-64
Smith-Waterman score: 1744; 93.9% identity (95.7% similar) in 279 aa overlap (48-324:39-317)

        20        30        40        50        60          70     
pF1KB7 KLSAVSSSSCHHPQPLAMASVLAPGQPRSLDSSKHRLEVHTIS--DTSSPEAAEKDKSQQ
                                     :: . : :. . .    . : : :::::::
NP_001 VSACVQLGVQPAAVECLFSKDSEIKKVEFTDSPESRKEAASSKFFPRQHPGANEKDKSQQ
       10        20        30        40        50        60        

          80        90       100       110       120       130     
pF1KB7 GKNEDVGAEDPSKKKRQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GKNEDVGAEDPSKKKRQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEAR
       70        80        90       100       110       120        

         140       150       160       170       180       190     
pF1KB7 VRVWFKNRRAKWRKRERNQQAELCKNGFGPQFNGLMQPYDDMYPGYSYNNWAAKGLTSAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VRVWFKNRRAKWRKRERNQQAELCKNGFGPQFNGLMQPYDDMYPGYSYNNWAAKGLTSAS
      130       140       150       160       170       180        

         200       210       220       230       240       250     
pF1KB7 LSTKSFPFFNSMNVNPLSSQSMFSPPNSISSMSMSSSMVPSAVTGVPGSSLNSLNNLNNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LSTKSFPFFNSMNVNPLSSQSMFSPPNSISSMSMSSSMVPSAVTGVPGSSLNSLNNLNNL
      190       200       210       220       230       240        

         260       270       280       290       300       310     
pF1KB7 SSPSLNSAVPTPACPYAPPTPPYVYRDTCNSSLASLRLKAKQHSSFGYASVQNPASNLSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SSPSLNSAVPTPACPYAPPTPPYVYRDTCNSSLASLRLKAKQHSSFGYASVQNPASNLSA
      250       260       270       280       290       300        

         320    
pF1KB7 CQYAVDRPV
       :::::::::
NP_001 CQYAVDRPV
      310       

>>NP_700475 (OMIM: 137600,180500,180550,601542,604229) p  (317 aa)
 initn: 1742 init1: 1742 opt: 1744  Z-score: 1270.7  bits: 243.3 E(85289): 4.9e-64
Smith-Waterman score: 1744; 93.9% identity (95.7% similar) in 279 aa overlap (48-324:39-317)

        20        30        40        50        60          70     
pF1KB7 KLSAVSSSSCHHPQPLAMASVLAPGQPRSLDSSKHRLEVHTIS--DTSSPEAAEKDKSQQ
                                     :: . : :. . .    . : : :::::::
NP_700 VSACVQLGVQPAAVECLFSKDSEIKKVEFTDSPESRKEAASSKFFPRQHPGANEKDKSQQ
       10        20        30        40        50        60        

          80        90       100       110       120       130     
pF1KB7 GKNEDVGAEDPSKKKRQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_700 GKNEDVGAEDPSKKKRQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEAR
       70        80        90       100       110       120        

         140       150       160       170       180       190     
pF1KB7 VRVWFKNRRAKWRKRERNQQAELCKNGFGPQFNGLMQPYDDMYPGYSYNNWAAKGLTSAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_700 VRVWFKNRRAKWRKRERNQQAELCKNGFGPQFNGLMQPYDDMYPGYSYNNWAAKGLTSAS
      130       140       150       160       170       180        

         200       210       220       230       240       250     
pF1KB7 LSTKSFPFFNSMNVNPLSSQSMFSPPNSISSMSMSSSMVPSAVTGVPGSSLNSLNNLNNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_700 LSTKSFPFFNSMNVNPLSSQSMFSPPNSISSMSMSSSMVPSAVTGVPGSSLNSLNNLNNL
      190       200       210       220       230       240        

         260       270       280       290       300       310     
pF1KB7 SSPSLNSAVPTPACPYAPPTPPYVYRDTCNSSLASLRLKAKQHSSFGYASVQNPASNLSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_700 SSPSLNSAVPTPACPYAPPTPPYVYRDTCNSSLASLRLKAKQHSSFGYASVQNPASNLSA
      250       260       270       280       290       300        

         320    
pF1KB7 CQYAVDRPV
       :::::::::
NP_700 CQYAVDRPV
      310       

>>NP_001191327 (OMIM: 137600,180500,180550,601542,604229  (317 aa)
 initn: 1742 init1: 1742 opt: 1744  Z-score: 1270.7  bits: 243.3 E(85289): 4.9e-64
Smith-Waterman score: 1744; 93.9% identity (95.7% similar) in 279 aa overlap (48-324:39-317)

        20        30        40        50        60          70     
pF1KB7 KLSAVSSSSCHHPQPLAMASVLAPGQPRSLDSSKHRLEVHTIS--DTSSPEAAEKDKSQQ
                                     :: . : :. . .    . : : :::::::
NP_001 VSACVQLGVQPAAVECLFSKDSEIKKVEFTDSPESRKEAASSKFFPRQHPGANEKDKSQQ
       10        20        30        40        50        60        

          80        90       100       110       120       130     
pF1KB7 GKNEDVGAEDPSKKKRQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GKNEDVGAEDPSKKKRQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEAR
       70        80        90       100       110       120        

         140       150       160       170       180       190     
pF1KB7 VRVWFKNRRAKWRKRERNQQAELCKNGFGPQFNGLMQPYDDMYPGYSYNNWAAKGLTSAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VRVWFKNRRAKWRKRERNQQAELCKNGFGPQFNGLMQPYDDMYPGYSYNNWAAKGLTSAS
      130       140       150       160       170       180        

         200       210       220       230       240       250     
pF1KB7 LSTKSFPFFNSMNVNPLSSQSMFSPPNSISSMSMSSSMVPSAVTGVPGSSLNSLNNLNNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LSTKSFPFFNSMNVNPLSSQSMFSPPNSISSMSMSSSMVPSAVTGVPGSSLNSLNNLNNL
      190       200       210       220       230       240        

         260       270       280       290       300       310     
pF1KB7 SSPSLNSAVPTPACPYAPPTPPYVYRDTCNSSLASLRLKAKQHSSFGYASVQNPASNLSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SSPSLNSAVPTPACPYAPPTPPYVYRDTCNSSLASLRLKAKQHSSFGYASVQNPASNLSA
      250       260       270       280       290       300        

         320    
pF1KB7 CQYAVDRPV
       :::::::::
NP_001 CQYAVDRPV
      310       

>>NP_001191328 (OMIM: 137600,180500,180550,601542,604229  (271 aa)
 initn: 1731 init1: 1731 opt: 1731  Z-score: 1262.3  bits: 241.6 E(85289): 1.4e-63
Smith-Waterman score: 1731; 100.0% identity (100.0% similar) in 256 aa overlap (69-324:16-271)

       40        50        60        70        80        90        
pF1KB7 LAPGQPRSLDSSKHRLEVHTISDTSSPEAAEKDKSQQGKNEDVGAEDPSKKKRQRRQRTH
                                     ::::::::::::::::::::::::::::::
NP_001                METNCRKLVSACVQLEKDKSQQGKNEDVGAEDPSKKKRQRRQRTH
                              10        20        30        40     

      100       110       120       130       140       150        
pF1KB7 FTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRERNQQAEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRERNQQAEL
          50        60        70        80        90       100     

      160       170       180       190       200       210        
pF1KB7 CKNGFGPQFNGLMQPYDDMYPGYSYNNWAAKGLTSASLSTKSFPFFNSMNVNPLSSQSMF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CKNGFGPQFNGLMQPYDDMYPGYSYNNWAAKGLTSASLSTKSFPFFNSMNVNPLSSQSMF
         110       120       130       140       150       160     

      220       230       240       250       260       270        
pF1KB7 SPPNSISSMSMSSSMVPSAVTGVPGSSLNSLNNLNNLSSPSLNSAVPTPACPYAPPTPPY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SPPNSISSMSMSSSMVPSAVTGVPGSSLNSLNNLNNLSSPSLNSAVPTPACPYAPPTPPY
         170       180       190       200       210       220     

      280       290       300       310       320    
pF1KB7 VYRDTCNSSLASLRLKAKQHSSFGYASVQNPASNLSACQYAVDRPV
       ::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VYRDTCNSSLASLRLKAKQHSSFGYASVQNPASNLSACQYAVDRPV
         230       240       250       260       270 

>>NP_700476 (OMIM: 137600,180500,180550,601542,604229) p  (271 aa)
 initn: 1731 init1: 1731 opt: 1731  Z-score: 1262.3  bits: 241.6 E(85289): 1.4e-63
Smith-Waterman score: 1731; 100.0% identity (100.0% similar) in 256 aa overlap (69-324:16-271)

       40        50        60        70        80        90        
pF1KB7 LAPGQPRSLDSSKHRLEVHTISDTSSPEAAEKDKSQQGKNEDVGAEDPSKKKRQRRQRTH
                                     ::::::::::::::::::::::::::::::
NP_700                METNCRKLVSACVQLEKDKSQQGKNEDVGAEDPSKKKRQRRQRTH
                              10        20        30        40     

      100       110       120       130       140       150        
pF1KB7 FTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRERNQQAEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_700 FTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRERNQQAEL
          50        60        70        80        90       100     

      160       170       180       190       200       210        
pF1KB7 CKNGFGPQFNGLMQPYDDMYPGYSYNNWAAKGLTSASLSTKSFPFFNSMNVNPLSSQSMF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_700 CKNGFGPQFNGLMQPYDDMYPGYSYNNWAAKGLTSASLSTKSFPFFNSMNVNPLSSQSMF
         110       120       130       140       150       160     

      220       230       240       250       260       270        
pF1KB7 SPPNSISSMSMSSSMVPSAVTGVPGSSLNSLNNLNNLSSPSLNSAVPTPACPYAPPTPPY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_700 SPPNSISSMSMSSSMVPSAVTGVPGSSLNSLNNLNNLSSPSLNSAVPTPACPYAPPTPPY
         170       180       190       200       210       220     

      280       290       300       310       320    
pF1KB7 VYRDTCNSSLASLRLKAKQHSSFGYASVQNPASNLSACQYAVDRPV
       ::::::::::::::::::::::::::::::::::::::::::::::
NP_700 VYRDTCNSSLASLRLKAKQHSSFGYASVQNPASNLSACQYAVDRPV
         230       240       250       260       270 

>>XP_011530329 (OMIM: 137600,180500,180550,601542,604229  (271 aa)
 initn: 1731 init1: 1731 opt: 1731  Z-score: 1262.3  bits: 241.6 E(85289): 1.4e-63
Smith-Waterman score: 1731; 100.0% identity (100.0% similar) in 256 aa overlap (69-324:16-271)

       40        50        60        70        80        90        
pF1KB7 LAPGQPRSLDSSKHRLEVHTISDTSSPEAAEKDKSQQGKNEDVGAEDPSKKKRQRRQRTH
                                     ::::::::::::::::::::::::::::::
XP_011                METNCRKLVSACVQLEKDKSQQGKNEDVGAEDPSKKKRQRRQRTH
                              10        20        30        40     

      100       110       120       130       140       150        
pF1KB7 FTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRERNQQAEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRERNQQAEL
          50        60        70        80        90       100     

      160       170       180       190       200       210        
pF1KB7 CKNGFGPQFNGLMQPYDDMYPGYSYNNWAAKGLTSASLSTKSFPFFNSMNVNPLSSQSMF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CKNGFGPQFNGLMQPYDDMYPGYSYNNWAAKGLTSASLSTKSFPFFNSMNVNPLSSQSMF
         110       120       130       140       150       160     

      220       230       240       250       260       270        
pF1KB7 SPPNSISSMSMSSSMVPSAVTGVPGSSLNSLNNLNNLSSPSLNSAVPTPACPYAPPTPPY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SPPNSISSMSMSSSMVPSAVTGVPGSSLNSLNNLNNLSSPSLNSAVPTPACPYAPPTPPY
         170       180       190       200       210       220     

      280       290       300       310       320    
pF1KB7 VYRDTCNSSLASLRLKAKQHSSFGYASVQNPASNLSACQYAVDRPV
       ::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VYRDTCNSSLASLRLKAKQHSSFGYASVQNPASNLSACQYAVDRPV
         230       240       250       260       270 

>>NP_002644 (OMIM: 119800,186550,602149) pituitary homeo  (314 aa)
 initn: 1148 init1: 595 opt: 1220  Z-score: 894.7  bits: 173.8 E(85289): 4.3e-43
Smith-Waterman score: 1228; 62.1% identity (78.2% similar) in 330 aa overlap (1-318:1-312)

               10        20        30        40         50         
pF1KB7 MNCMKGPLHLEHRAAGTKLSAVSSSSCHHPQPLAMASVLA-PGQPRSLDSSKHRLEVHTI
       :. .:: . ::.   : .           :. .. :  :: :..::      . :: .. 
NP_002 MDAFKGGMSLERLPEGLRPPPPP------PHDMGPAFHLARPADPR------EPLE-NSA
               10        20              30        40              

      60        70         80                90       100       110
pF1KB7 SDTSSPEAAEKDKSQQGKN-EDVGA--------EDPSKKKRQRRQRTHFTSQQLQELEAT
       :..:. :  ::... . :. :: ::        .::.:::.:::::::::::::::::::
NP_002 SESSDTELPEKERGGEPKGPEDSGAGGTGCGGADDPAKKKKQRRQRTHFTSQQLQELEAT
        50        60        70        80        90       100       

              120       130       140       150       160       170
pF1KB7 FQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRERNQQAELCKNGFGPQFNGL
       :::::::::: :::::::::::: ::::::::::::::::::::: .:::.:. :::.::
NP_002 FQRNRYPDMSMREEIAVWTNLTEPRVRVWFKNRRAKWRKRERNQQLDLCKGGYVPQFSGL
       110       120       130       140       150       160       

               180       190       200       210       220         
pF1KB7 MQPYDDMYP-GYSYNNWAAKGLTSASLSTKSFPFFNSMNVNPLSSQSMFSPPNSISSMSM
       .:::.:.:  ::::::::::.:. : :::::: :::::.  ::::::::: :.:::::.:
NP_002 VQPYEDVYAAGYSYNNWAAKSLAPAPLSTKSFTFFNSMS--PLSSQSMFSAPSSISSMTM
       170       180       190       200         210       220     

     230       240       250       260       270        280        
pF1KB7 SSSMVPSAVTGVPGSSLNSLNNLNNLSSPSLNSAVPTPACPYAPPTPPY-VYRDTCNSSL
        ::: :.:: :.:.:.   :::.:::.. :::::.   ::::. :. :: ::::::::::
NP_002 PSSMGPGAVPGMPNSG---LNNINNLTGSSLNSAMSPGACPYGTPASPYSVYRDTCNSSL
         230       240          250       260       270       280  

      290       300       310       320    
pF1KB7 ASLRLKAKQHSSFGYASVQNPASNLSACQYAVDRPV
       ::::::.::::::::...:.:::.:.::::      
NP_002 ASLRLKSKQHSSFGYGGLQGPASGLNACQYNS    
            290       300       310        

>>NP_005020 (OMIM: 107250,602669,610623) pituitary homeo  (302 aa)
 initn: 1012 init1: 712 opt: 1008  Z-score: 742.7  bits: 145.6 E(85289): 1.2e-34
Smith-Waterman score: 1013; 56.9% identity (77.6% similar) in 304 aa overlap (47-324:6-302)

         20        30        40        50        60        70      
pF1KB7 TKLSAVSSSSCHHPQPLAMASVLAPGQPRSLDSSKHRLEVHTISDTSSPEAAEKDKSQQG
                                     :. .. :  . ..::...:.    ... .:
NP_005                          MEFGLLSEAEARSPALSLSDAGTPHPQLPEHGCKG
                                        10        20        30     

             80               90       100       110       120     
pF1KB7 K----NEDVGA-------EDPSKKKRQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEI
       .    .: ..:       :: : ::.::::::::::::::::::::::::::::::::::
NP_005 QEHSDSEKASASLPGGSPEDGSLKKKQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEI
          40        50        60        70        80        90     

         130       140       150       160       170       180     
pF1KB7 AVWTNLTEARVRVWFKNRRAKWRKRERNQQAELCKNGFGPQFNGLMQPYDDMYPGYSYNN
       :::::::::::::::::::::::::::.:::::::..:.  ..::. ::...::::::.:
NP_005 AVWTNLTEARVRVWFKNRRAKWRKRERSQQAELCKGSFAAPLGGLVPPYEEVYPGYSYGN
         100       110       120       130       140       150     

         190       200        210       220        230       240   
pF1KB7 WAAKGLTSASLSTKSFPF-FNSMNVNPLSSQSMFSPPNSIS-SMSMSSSMVPSAVTGVPG
       :  :.: .  :..:.::: :::.::.::.:: .::::.::. ::  :.. .:..: : ::
NP_005 WPPKAL-APPLAAKTFPFAFNSVNVGPLASQPVFSPPSSIAASMVPSAAAAPGTVPG-PG
         160        170       180       190       200       210    

           250       260          270               280       290  
pF1KB7 SSLNSLNNLNNLSSPSLN-SAVPTPA--CPYAPP--------TPPYVYRDTCNSSLASLR
       .    :..:.. . :.:  .:: . :  ::::          . :::::: :::::::::
NP_005 A----LQGLGG-GPPGLAPAAVSSGAVSCPYASAAAAAAAAASSPYVYRDPCNSSLASLR
               220        230       240       250       260        

            300         310       320    
pF1KB7 LKAKQHSSFGYASVQNP--ASNLSACQYAVDRPV
       ::::::.::.: .:..:  :.::: :::::.:::
NP_005 LKAKQHASFSYPAVHGPPPAANLSPCQYAVERPV
      270       280       290       300  

>>NP_620689 (OMIM: 300004,300215,300382,300419,308350,30  (562 aa)
 initn: 340 init1: 288 opt: 387  Z-score: 293.4  bits: 63.3 E(85289): 1.3e-09
Smith-Waterman score: 387; 35.4% identity (61.0% similar) in 254 aa overlap (65-300:299-544)

           40        50        60        70        80          90  
pF1KB7 MASVLAPGQPRSLDSSKHRLEVHTISDTSSPEAAEKDKSQQGKNEDVGA--EDPSKKKRQ
                                     :: ::   ....   ..:.  :.   :..:
NP_620 AATGAVAAAAAAAVATEGGELSPKEELLLHPEDAEGKDGEDSVCLSAGSDSEEGLLKRKQ
      270       280       290       300       310       320        

            100       110       120       130       140       150  
pF1KB7 RRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRER
       :: :: ::: ::.::: .::...:::. ::::.:.  .::::::.:::.::::::::::.
NP_620 RRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWRKREK
      330       340       350       360       370       380        

            160           170       180       190       200        
pF1KB7 NQQAELCKNGF---GP-QFNGLMQPYDDMYPGYSYNNWAAKGLTSASLSTKS-FPFFNSM
          :.    :.   :: . .  ..:: :  :   ..    .. :.:. .. . ::   :.
NP_620 AG-AQTHPPGLPFPGPLSATHPLSPYLDASPFPPHHPALDSAWTAAAAAAAAAFP---SL
      390        400       410       420       430       440       

       210       220       230             240       250       260 
pF1KB7 NVNPLSSQSMFSPPNSISSMSMSSSMV------PSAVTGVPGSSLNSLNNLNNLSSPSLN
          : .: :.  :: : . ...:. .       :. .. . :  ....  :.. :. .  
NP_620 PPPP-GSASL--PP-SGAPLGLSTFLGAAVFRHPAFISPAFGRLFSTMAPLTSASTAAAL
           450          460       470       480       490       500

             270            280       290       300       310      
pF1KB7 SAVPTPACPYAPPT-----PPYVYRDTCNSSLASLRLKAKQHSSFGYASVQNPASNLSAC
          ::::   :  .     :  .  :   ::.:.::::::.:..                
NP_620 LRQPTPAVEGAVASGALADPATAAADRRASSIAALRLKAKEHAAQLTQLNILPGTSTGKE
              510       520       530       540       550       560

        320    
pF1KB7 QYAVDRPV
               
NP_620 VC      
               




324 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 10:22:25 2016 done: Sat Nov  5 10:22:27 2016
 Total Scan time:  8.890 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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