GENSCAN 1.0	Date run:  8-Nov-116	Time: 12:05:52

Sequence gi568815581r:49601461_49807833 : 206373 bp : 44.04% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.09 PlyA -    106    101    6                               1.05
 1.08 Term -    547    404  144  1  0   70   40   193 0.237  10.61
 1.07 Intr -   5912   5790  123  2  0   35  116   164 0.999  14.68
 1.06 Intr -   6469   6414   56  2  2   74   95    44 0.333   2.40
 1.05 Intr -   9997   9820  178  1  1  103   77   111 0.977  10.99
 1.04 Intr -  17648  17521  128  0  2  115  105   147 0.993  19.50
 1.03 Intr -  17925  17774  152  2  2   97   34   135 0.998   8.81
 1.02 Intr -  20652  20486  167  0  2  117   77    92 0.869   9.76
 1.01 Init -  21314  21273   42  2  0   75  111     9 0.655   2.33
 1.00 Prom -  51965  51926   40                              -2.76

 2.03 PlyA -  52000  51995    6                               1.05
 2.02 Term -  57501  57394  108  0  0   76   39    77 0.887   0.11
 2.01 Init -  61711  61649   63  1  0   59   99    79 0.807   5.26
 2.00 Prom -  67312  67273   40                              -4.46

 3.04 PlyA -  68370  68365    6                               1.05
 3.03 Term -  69911  69829   83  0  2   97   42    54 0.679  -0.44
 3.02 Intr -  76545  76473   73  0  1   82  109    54 0.917   5.88
 3.01 Init -  76705  76625   81  1  0   77   70    78 0.666   3.92
 3.00 Prom -  77027  76988   40                              -6.16

 4.11 PlyA -  80579  80574    6                               1.05
 4.10 Term -  81012  80891  122  1  2  105   47    72 0.097   3.44
 4.09 Intr - 101551 101398  154  1  1   95  106   145 0.998  16.65
 4.08 Intr - 101834 101728  107  0  2   51  109   113 0.999   9.63
 4.07 Intr - 102565 102383  183  2  0   95   67    25 0.606   0.86
 4.06 Intr - 102766 102640  127  1  1   87   72   133 0.997  11.85
 4.05 Intr - 103821 103664  158  1  2   84   56    99 0.978   6.03
 4.04 Intr - 104436 104406   31  0  1   57  115    21 0.865  -0.60
 4.03 Intr - 104874 104744  131  1  2  102   67    66 0.884   6.31
 4.02 Intr - 105608 105505  104  1  2   95   65   102 0.881   8.42
 4.01 Init - 106484 106270  215  2  2   35   50   340 0.781  21.12
 4.00 Prom - 108699 108660   40                              -6.76

 5.11 PlyA - 108888 108883    6                               1.05
 5.10 Term - 110095 109795  301  0  1  102   55   160 0.954   8.79
 5.09 Intr - 114855 114705  151  1  1   66   94   136 0.509  11.22
 5.08 Intr - 116254 116053  202  1  1   90  121   155 0.915  17.86
 5.07 Intr - 118434 118300  135  0  0  109   96    86 0.983  12.26
 5.06 Intr - 118976 118866  111  2  0   63   75    65 0.896   3.28
 5.05 Intr - 121134 121039   96  0  0  116   55    56 0.468   5.31
 5.04 Intr - 131260 131091  170  2  2   67   95   153 0.543  13.57
 5.03 Intr - 155968 155778  191  0  2   73   72    86 0.222   4.73
 5.02 Intr - 161775 161700   76  1  1   92    3    70 0.076  -2.53
 5.01 Init - 162627 162432  196  0  1  102   99   149 0.855  14.49
 5.00 Prom - 175790 175751   40                              -4.36

 6.00 Prom + 181491 181530   40                              -1.96
 6.01 Init + 184093 184098    6  0  0   57   91     0 0.447  -1.83
 6.02 Intr + 187225 187389  165  0  0   26  100   162 0.933  11.36
 6.03 Term + 187541 187657  117  1  0   76   38    73 0.632  -0.36
 6.04 PlyA + 189373 189378    6                               1.05

 7.00 Prom + 192767 192806   40                              -5.86
 7.01 Init + 193883 194186  304  1  1   96   69   282 0.781  24.54
 7.02 Intr + 195290 195466  177  0  0   -9  105   168 0.782   8.69
 7.03 Intr + 196859 197098  240  0  0   79   68   206 0.438  15.22

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term - 100050  99998   53  1  2  120   49    55 0.923   2.39


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815581r:49601461_49807833|GENSCAN_predicted_peptide_1|329_aa
MSSGPVAESWCYTQVVHFLFNCFLFFYQQIKVVKFSYMWTINNFSFCREEMGEVIKSSTF
SSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCPKSEVRAKFKFSILNAKGEETKAM
ESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQNTMN
MVKVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESK
KNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNL
SVENAAEILILADLHSADQLKTQAVDFIN

>gi568815581r:49601461_49807833|GENSCAN_predicted_CDS_1|990_bp
atgtcgagtggccccgtagctgagagttggtgctacacacaggttgtccacttcctattt
aattgcttcctgtttttctatcaacagatcaaggtagtgaaattctcctacatgtggacc
atcaataactttagcttttgccgggaggaaatgggtgaagtcattaaaagttctacattt
tcatcaggagcaaatgataaactgaaatggtgtttgcgagtaaaccccaaagggttagat
gaagaaagcaaagattacctgtcactttacctgttactggtcagctgtccaaagagtgaa
gttcgggcaaaattcaaattctccatcctgaatgccaagggagaagaaaccaaagctatg
gagagtcaacgggcatataggtttgtgcaaggcaaagactggggattcaagaaattcatc
cgtagagattttcttttggatgaggccaacgggcttctccctgatgacaagcttaccctc
ttctgcgaggtgagtgttgtgcaagattctgtcaacatttctggccagaataccatgaac
atggtaaaggttcctgagtgccggctggcagatgagttaggaggactgtgggagaattcc
cggttcacagactgctgcttgtgtgttgccggccaggaattccaggctcacaaggctatc
ttagcagctcgttctccggtttttagtgccatgtttgaacatgaaatggaggagagcaaa
aagaatcgagttgaaatcaatgatgtggagcctgaagtttttaaggaaatgatgtgcttc
atttacacggggaaggctccaaacctcgacaaaatggctgatgatttgctggcagctgct
gacaagtatgccctggagcgcttaaaggtcatgtgtgaggatgccctctgcagtaacctg
tccgtggagaacgctgcagaaattctcatcctggccgacctccacagtgcagatcagttg
aaaactcaggcagtggatttcatcaactag

>gi568815581r:49601461_49807833|GENSCAN_predicted_peptide_2|56_aa
MLARPSTSHLLCAWFLTGHGSRDKRAEKNSEVGVWEVEKVASRSLLRCGSMDEHMK

>gi568815581r:49601461_49807833|GENSCAN_predicted_CDS_2|171_bp
atgcttgctcgcccgtccacctctcacctcctgtgcgcctggttcctaacaggccatggg
tcgagggataagagggctgagaaaaattcagaagttggtgtctgggaagtggagaaagtt
gcaagcagatctttgctaaggtgtgggagcatggatgagcacatgaagtag

>gi568815581r:49601461_49807833|GENSCAN_predicted_peptide_3|78_aa
MGRRPRGVGSGGTRWLRRRADAMTPRLVPDVADSMRQAQGDGDQQLSPPLSVNYEVGAKV
IAVLSFNGKNLNYFCTNL

>gi568815581r:49601461_49807833|GENSCAN_predicted_CDS_3|237_bp
atggggaggaggccgcgcggggtggggtctggcggtacgcgctggctgcgtcgacgtgct
gacgccatgacgccccggctggtcccggatgttgcggacagtatgaggcaagcgcagggg
gacggggaccagcagctgtcgccgccgctctcagtaaattatgaggttggtgcaaaagta
attgcggttttgtcatttaatggtaaaaacctcaattacttttgcaccaacctctaa

>gi568815581r:49601461_49807833|GENSCAN_predicted_peptide_4|443_aa
MRPLPPVGDVRLELSPPPPLLPVPVVSGSPVGSSGRLMASSSSLVPDRLRLPLCFLGVFV
CYFYYGILQEKITRGKYGEGAKQETFTFALTLVFIQCVINAVFAKILIQFFDTARVDRTR
SWLYAACSISYLGAMVSSNSALQFVNYPTQVLGKSCKPIPVMLLGVTLLKKKYPLAKYLC
VLLIVAGVALFMYKPKKVVGIEEHTVGYGELLLLLSLTLDGLTGVSQDHMRAHYQTGSNH
MMLNINLWSTLLLGMAVSCPDQGPELVPRCPFVQALEKPSWKNLHQQDLFATCYWHNEGE
SCVSCHGKTLSSKTQGGILFTGELWEFLSFAERYPAIIYNILLFGLTSALGQSFIFMTVV
YFGPLTCSIITTTRKFFTILASVILFANPISPMQWVGTVLVFLELQGKPHLCLLDCKMEP
KILVGISEPLGKIPHPDLAHNSQ

>gi568815581r:49601461_49807833|GENSCAN_predicted_CDS_4|1332_bp
atgaggcccctgccgccggtcggcgatgtccggctggagctgtcgcctccgccgccgctg
ctgccggtgccggttgtgagcgggtctccagtcggctcctctgggcgtctcatggcctct
agcagctccctggtgcccgaccggctgcgcctgccgctctgcttcctgggtgtctttgtc
tgctatttttactatgggatcctgcaggaaaagataacaagaggaaagtatggggaagga
gccaagcaggagacgttcacctttgccttaactttggtcttcattcaatgtgtgatcaat
gctgtgtttgccaagatcttgatccagttttttgacactgccagggtggatcgtacccgg
agctggctctatgctgcctgttctatctcctatctgggtgccatggtctccagcaattca
gcactacagtttgtcaactacccaactcaggtccttggtaaatcctgcaagccaatccca
gtcatgctccttggggtgaccctcttgaagaagaagtacccgttggccaagtacctgtgt
gtgctgttaattgtggctggagtggcccttttcatgtacaaacccaagaaagttgttggg
atagaagaacacacagtcggctatggagagctactcttgctattatcgctgaccctggat
ggactgactggtgtttcccaggaccacatgcgggctcattaccaaacaggctccaaccac
atgatgctgaacatcaacctttggtcgacattgctgctgggaatggctgttagttgccca
gaccaagggcctgaattagttccaagatgcccttttgttcaagcccttgagaaaccttcc
tggaaaaacctgcaccagcaggatttgtttgctacttgttactggcacaatgaaggagag
tcgtgtgtcagttgtcatgggaagacactcagtagtaaaacacagggaggaatcctgttc
actggggagctctgggagttcttgagctttgctgaaaggtaccctgccatcatctataac
atcctgctctttgggctgaccagtgccctgggtcagagcttcatctttatgacggttgtg
tattttggtcccctgacctgctccatcatcactacaactcgaaagttcttcacaattttg
gcctctgtgatcctcttcgccaatcccatcagccccatgcagtgggtgggcactgtgctt
gtgttcctggagcttcaagggaaaccacacctttgcttgctggactgtaaaatggagccg
aagatcctcgttggcatctcagagcctttggggaagatcccgcacccagacctggctcat
aacagccaatga

>gi568815581r:49601461_49807833|GENSCAN_predicted_peptide_5|542_aa
MAGAAAGGRGGGAWGPGRGGAGGLRRGCSPPAPAGSPRAGLQPLRATIPFQLQQPHQRRD
GGGRAEVVRSQILDLLNMAVSFQPSFVYERVPTYALIDPYCVGALQLIKGGFNELKRMLS
KYFIIEKLQVQALGDLELKSRPCTDIYPALLRHTASVPCSVAPEKSVCRPQPLQVRRTFS
LDTILSSYLLGQWPRDADGAFTCCTNDKATQTPLSWQELEGERASSCAHKRSASWGSTDH
RKEISKLKQQLQRTKLSRSGKEKERGSPLLGDHAVRGALRASPPSFPSGSPVLRLSPCLH
RSLEGLNQELEEVFVKEQGEEELLRILDIPDGHRAPAPPQSGSCDHPLLLLEPGNLASSP
SMSLASPQPCGLASHEEHRGAAEELASTPNDKASSPGHPAFLEDGSPSPVLAFAASPRPN
HSYIFKREPPEGCEKVRVFEEATSPGPDLAFLTSCPDKNKVHFNPTGSAFCPVNLMKPLF
PGMGFIFRNCPSNPGSPLPPASPRPPPRKDPEASKASPLPFEPWQRTPPSEEPVLFQSSL
MV

>gi568815581r:49601461_49807833|GENSCAN_predicted_CDS_5|1629_bp
atggcgggggccgcagcgggcggcagaggcggaggtgcctgggggccggggcgcggaggg
gccggggggctccggcggggctgctctcccccagcccccgccggctccccccgggctggg
ctgcagccgctcagggccacgatccccttccagctgcagcagccgcaccagcgccgggac
gggggtggccgtgcagaagttgtacgttcccagattcttgacctgcttaatatggctgtc
tcattccaaccatcgtttgtgtacgagcgtgtgcccacatatgccttgatcgacccttac
tgtgtgggagcactgcagctaatcaagggtggctttaatgaacttaaaagaatgctatcc
aagtatttcataatagaaaaacttcaagtccaggccctgggggacctggaactgaagtcc
aggccatgtacagacatttaccctgccctgctcaggcatacagccagcgtcccatgctcg
gtggccccagaaaagtcagtgtgtaggcctcagccacttcaggtccggcgtacattctcc
ctggacaccatcctcagctcctaccttctgggccagtggccacgagatgctgatggggcc
ttcacctgctgcaccaatgacaaggccacccagacgcccctgtcctggcaagagctagaa
ggtgagcgtgccagttcctgtgcacacaagcgctcagcatcctggggcagcacagaccac
cgaaaagagatttccaagttgaagcaacaactgcagaggacgaagctgagccgcagtggg
aaagagaaggagcgaggttcaccactcctaggggaccacgcagtgcggggagcactgagg
gcgtcccctcccagcttcccctcagggtcccctgtcttgcgactcagcccctgcctgcac
aggagcctggaagggctcaaccaagagctggaggaggtatttgtgaaggagcagggagaa
gaggagctgctgaggatccttgatatccctgatgggcaccgggccccagctcctccccag
agtggcagctgtgatcatcccctcctcctcctggagcctggcaaccttgccagctctcct
tccatgtccttggcatctccccagccttgtggcctggccagtcatgaggaacatcggggt
gccgccgaggagctggcatccacccccaacgacaaagcctcctctccaggacacccagcc
tttcttgaagatggcagcccatctccagtccttgcctttgctgcctcccctcgacctaat
catagctacatcttcaaacgggagcccccagaaggctgtgagaaagtgcgtgtgtttgaa
gaagccacgtctccaggtcctgacctggccttcctgacttcctgtcctgacaagaacaaa
gtccatttcaacccgactggctcagccttctgccccgtcaacctgatgaagcccctcttc
cccggcatgggcttcatcttccgtaactgcccctcaaacccgggatctccccttcccccg
gccagccccaggccaccacctcggaaggatccggaagcctccaaggcctccccactgcca
ttcgagccatggcagcgcaccccaccatcagaagagcctgtgcttttccagagctccctg
atggtctga

>gi568815581r:49601461_49807833|GENSCAN_predicted_peptide_6|95_aa
MQNAPDAERQEALGIVRRIGTDTEAATEPAGATVPAAAAAARIGTVGPQPPAMPRRKKNV
GPTLASAYACNYSRPLLAWIGGVLINWSLKRLEAY

>gi568815581r:49601461_49807833|GENSCAN_predicted_CDS_6|288_bp
atgcagaacgctccagacgctgagaggcaggaggcactagggatcgtccgcaggattggg
actgatacagaggccgccacggagcccgccggagccaccgttcctgctgctgccgccgct
gcccgaatcggaaccgtcgggccgcagccgccggcaatgccgcgaaggaagaaaaatgtg
ggcccgaccctggcctcggcctatgcttgcaactattcccgccctctgcttgcctggatc
ggaggcgttcttattaattggtcgctgaaacgtctggaagcatattga

>gi568815581r:49601461_49807833|GENSCAN_predicted_peptide_7|241_aa
MVLLESEQFLTELTRLFQKCWTSGSIYITLKKYGGGTKPVPKKGSVEGFEPSDKCLLRAI
DGKKKVSTVVSSNQVNKFQMAYSNLPSANMDGLKKRDKKNKNSSPVRNLQSFGTEEPAYS
TRRVTRSQQQPTPVTPKKYPLRQTRSSGSETEQVVDFSDRETKNTADHDESPPRTPTGNA
PSSESDIDISSPNVSHDESIAKDMSLKDSGSDLSHRPKRRRFHESYNFNMKCPTPGCNSL
X

>gi568815581r:49601461_49807833|GENSCAN_predicted_CDS_7|723_bp
atggtgttgttggagagtgagcagttcctgacggagctgaccagacttttccagaagtgc
tggacatcgggcagcatctatatcaccttgaagaagtatggtggtggaaccaaacccgtt
ccaaagaaaggttctgtggagggctttgagccctcagacaagtgtctgttaagagctatc
gatgggaaaaagaaggtcagcactgtggtgagctccaaccaagtgaataagtttcagatg
gcttattcaaacctaccgagtgctaacatggatgggctgaagaaaagggacaaaaagaac
aaaaattccagtcctgttcgaaatctgcagtcttttggcactgaggagcctgcttactct
accagaagagtgacccgtagtcagcagcagcctaccccagtgacaccgaaaaaataccct
cttcggcagactcgttcatctggttcagaaactgagcaagtggttgatttttcagataga
gaaactaaaaatacagctgatcatgatgagtcaccgcctcgaactccaactggaaatgcg
ccttcttctgagtctgacatagacatctccagccccaatgtatctcacgatgagagcatt
gccaaggacatgtccctgaaggactcaggcagtgatctctctcatcgccccaagcgccgt
cgcttccatgaaagctacaacttcaatatgaagtgtcctacaccaggctgtaactctcta
gnn