GENSCAN 1.0	Date run:  8-Nov-116	Time: 12:57:08

Sequence gi568815579r:9754189_9960797 : 206609 bp : 49.73% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.11 PlyA -   1188   1183    6                               1.05
 1.10 Term -   4576   3287 1290  1  0   74   45   752 0.999  61.10
 1.09 Intr -   5754   5672   83  1  2   76   91    55 0.994   3.96
 1.08 Intr -   7980   7894   87  1  0   93   96     8 0.704   2.04
 1.07 Intr -   9220   9094  127  1  1   -1   66   136 0.869   2.75
 1.06 Intr -  14179  14101   79  0  1   84  105    15 0.789   2.35
 1.05 Intr -  14800  14547  254  1  2   36  -14   228 0.403   3.63
 1.04 Intr -  31891  31738  154  0  1   68   80   114 0.667   8.67
 1.03 Intr -  39217  38688  530  1  2   17   85   172 0.018   1.53
 1.02 Intr -  42745  42635  111  1  0   97   64    78 0.435   6.88
 1.01 Init -  49141  49094   48  1  0  106   57   -15 0.148  -1.84
 1.00 Prom -  50262  50223   40                              -3.16

 2.04 PlyA -  50689  50684    6                               1.05
 2.03 Term -  57529  56708  822  1  0  113   36   866 0.976  76.99
 2.02 Intr -  64429  64357   73  0  1  114   88   112 0.999  13.21
 2.01 Init -  64625  64540   86  2  2  103   80   160 0.999  15.05
 2.00 Prom -  65672  65633   40                              -8.86

 3.00 Prom +  65801  65840   40                              -1.66
 3.01 Sngl +  66031  66270  240  0  0   59   55   465 0.998  35.38
 3.02 PlyA +  66309  66314    6                               1.05

 4.00 Prom +  66365  66404   40                              -7.16
 4.01 Init +  72642  72678   37  2  1   49   80     5 0.472  -4.02
 4.02 Intr +  73108  73244  137  2  2   80   83    90 0.508   7.99
 4.03 Term +  73349  73483  135  1  0   85   43   100 0.378   3.22
 4.04 PlyA +  75642  75647    6                               1.05

 5.00 Prom +  76371  76410   40                              -4.16
 5.01 Init +  81157  81214   58  0  1  101   55    96 0.984   9.07
 5.02 Intr +  84248  84460  213  0  0  105  101   395 0.816  41.19
 5.03 Intr +  91622  91747  126  0  0   31   80   122 0.621   6.35
 5.04 Intr +  93842  93952  111  0  0  111   69   151 0.987  15.85
 5.05 Term +  94902  95011  110  1  2  124   55   230 0.962  21.97
 5.06 PlyA +  96137  96142    6                               1.05

 6.09 PlyA -  97716  97711    6                               1.05
 6.08 Term - 100675  99998  678  1  0   58   52  1242 0.999 111.29
 6.07 Intr - 102725 102619  107  0  2  114  100   155 0.999  19.23
 6.06 Intr - 103294 103075  220  1  1   41   59   386 0.997  28.87
 6.05 Intr - 103673 103527  147  2  0   75   94   231 0.975  22.83
 6.04 Intr - 106606 106457  150  1  0   86  100   155 0.505  16.86
 6.03 Intr - 109219 109191   29  2  2  119   80    22 0.247   2.33
 6.02 Intr - 114986 114887  100  2  1   87    7   108 0.010   2.28
 6.01 Init - 159429 159295  135  0  0   88   78   318 0.979  30.94
 6.00 Prom - 170739 170700   40                              -3.96

 7.03 PlyA - 172004 171999    6                               1.05
 7.02 Term - 176020 175916  105  1  0   84   42    19 0.101  -4.69
 7.01 Init - 182178 182116   63  0  0   68   91   211 0.950  18.55
 7.00 Prom - 204015 203976   40                              -1.96

 8.03 PlyA - 205391 205386    6                               1.05
 8.02 Term - 206369 206223  147  2  0   87   54   128 0.937   7.20
 8.01 Intr - 206556 206463   94  2  1  -14   94   120 0.689   2.37

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init -  32357  32341   17  2  2  100   93    17 0.910   1.96
S.002 Term - 114986 114879  108  2  0   87   49   119 0.951   6.41
S.003 Term - 129380 129310   71  0  2   62   42   109 0.897   1.80
S.004 Init - 133372 133327   46  1  1   88  116    34 0.817   7.04


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815579r:9754189_9960797|GENSCAN_predicted_peptide_1|920_aa
MAGDTALRRPGEHVPKTLEFNVFSGNQHGRSEQSLLKHKDISYLIPHNHMIEGRKTLTYK
NANKVVKRDVSVIYCRITNHQETAHPRTSRMNAEESEQRHFEVPPNRLPPSWSRPHPKPP
PGSAPTVPSEAGGTGSNRCRLRGNWDFSPGSWRTRPPTLPPPHASETGSRALSRFRAPRG
ESEVRVIRAAPPSQEPQLNQRFPLHQPLRPGGASGAASPRGGRKTRAGTRPPRPGPEPSV
PSETLERNQKCAWPQRRLLPFSRRWPNGFPSSSLCDQVRLQSPPPTRPLALGFLVRRRSQ
YRQIDLDPGPPGMRENGTFLYACRRGGPSSSLSFTSSSFQSSWGSAPTLNAVRNRKRKCQ
PARSYTRKSISAVVEKGPSVLLSPTGRLQCVPHLVTFEDVAVDFTQEEWTLLDQAQRDLY
RDVMLENYKNLIILAGSELFKRSLMSGLEQMEELRTGVTGVLQELDLQLKTKGSPLLQDI
SAERSPNGVQLERSNTAEKLYDSNHSGKVFNEHPFLMTHMITHIGEKTSEDNQSGKALRK
NFPHSFYKKSHAEGKMPKCVKHEKAFNQFPNLTRQNKTHTQEKLCECKDCWRTFLNQSSL
KLHIRSHNGDKHYVCKECGKAFSNSSHLIGHGRIHSGEKPYVCKECGKAFTQSTGLKLHI
RTHSGEKPYKCKECGKAFTHSSYLTDHTRIHSGKKPYVCMECGKAFTRSTGLILHMRIHT
GEKPYECKECGKAFIHSSYLTKHVRIHSGEKLYLCKACGKAFTRSSGLVLHMRTHTGEKP
YECKECGKAFNNSSMLSQHVRIHTGEKPYECKECGKAFTQSSGLSTHLRTHTGEKACECK
ECGKAFARSTNLNMHMRTHTGEKPYACKECGKAFRYSTYLNVHTRTHTGAKPYECKKCGK
NFTQSSALAKHLRTKACEKT

>gi568815579r:9754189_9960797|GENSCAN_predicted_CDS_1|2763_bp
atggccggtgatacagccctcaggaggccaggagaacatgtgcccaagactctagagttt
aacgtcttcagtgggaatcagcatggacgttcagaacagtccctccttaaacacaaagac
atttcctacctcatacctcataatcacatgatagaagggaggaagaccctgacctataaa
aacgcaaacaaagtagtgaagagagatgtatcagttatctactgccgtataacaaaccac
caggaaacagcgcatcctcgtacaagccgcatgaatgcagaggaaagcgagcagaggcat
ttcgaggtcccgcccaacagactccctccatcgtggtcccgcccccaccccaagccgccg
ccgggttctgcccccacggtgcccagtgaagccggagggacggggtccaaccgttgtcgg
ctgcgcggaaactgggacttctccccagggtcgtggaggacgcggccgccgaccctccca
ccgcctcacgcctcggagaccgggtccagagccctcagccgcttccgagccccgagaggg
gaatcagaagtgcgcgtgatcagagcggcacccccttcccaggaaccgcagctgaaccaa
cggtttcccctgcaccagcctttgcgaccaggtggggcttcaggtgcggcttcgccacgt
ggaggcaggaagacccgggcagggactcggcctccgaggccgggtccagagccctcagtt
ccttctgaaaccctggagcggaatcagaagtgcgcgtggccacagcggcgcctcctgccc
tttagccgccgctggcccaacggtttccccagcagtagcctctgcgaccaggtgcggctt
cagtccccgcctccaacccggcccttggcgctgggtttcctggtccggcgtcgttcccaa
tatcgacagattgatctggatcctggtccacctgggatgcgagaaaacgggacttttctg
tacgcgtgtcgaagaggtggccccagctcttctctcagcttcacatcatcctcattccaa
agctcttggggctcggcccctacacttaatgccgtgcgcaaccggaagcggaagtgccag
ccggcgcgcagctatacaaggaaaagcatctcagctgttgtggaaaagggccccagcgtc
ctcttgtcaccgacagggcgattgcagtgcgttccgcacttagtgacctttgaggatgtg
gctgtggactttacccaggaggagtggactttgttggatcaagcccagagagatctctac
agagatgtgatgttggagaactacaagaatctcattatactagcagggtctgaattattc
aaacgtagtctcatgtctggattggaacaaatggaagagctgaggacaggagtgacagga
gttctgcaggaattggatttgcaactcaaaaccaaaggctccccactgctgcaagatatt
tctgcagaaagatcaccaaatggagtacaattggagagaagcaatactgcagagaaactg
tatgactctaaccattctggaaaagtcttcaatgaacacccatttcttatgactcacatg
ataactcacattggagagaaaacttctgaggataatcagagtggaaaagccttaagaaag
aactttcctcatagtttttacaagaaaagtcatgctgaggggaaaatgcctaagtgtgtt
aaacatgaaaaagccttcaaccagtttccaaatcttactaggcagaataaaactcacaca
caagagaaattgtgtgaatgcaaagactgttggagaacttttcttaatcagtcatccctt
aagttacatataagatctcacaatggagacaaacactatgtatgtaaggaatgtgggaaa
gccttcagtaattcctcacaccttataggacatggaagaattcacagtggagagaagccc
tatgtctgtaaagaatgtggtaaagctttcactcaatccacaggacttaaattacacatc
agaactcacagtggagaaaaaccatataaatgtaaagagtgtgggaaagccttcacccat
tcttcataccttactgatcatacaagaatccacagtggaaagaagccctatgtatgtatg
gaatgtggaaaagccttcactagatccacaggacttattttacacatgcgaattcacact
ggagaaaagccatatgaatgtaaggagtgtggaaaagcttttattcattcctcatacctt
acaaaacatgtaaggattcacagtggagagaagctgtatttatgtaaggcatgtgggaaa
gcttttactcgttcctcaggacttgttttacacatgagaacacatactggagaaaagccc
tatgaatgtaaagaatgtgggaaagcctttaataattcctcaatgcttagtcaacatgta
aggattcacactggagagaagccatatgaatgcaaagaatgtgggaaagctttcactcaa
tcctcgggccttagtacccatttaagaactcacactggagaaaaggcctgtgaatgtaag
gaatgcggtaaagcatttgctcgttccacaaatcttaatatgcacatgcgaacgcacaca
ggagaaaagccttatgcatgtaaagaatgtgggaaagccttcaggtattccacatacctt
aacgttcacacacgaactcacactggagcaaaaccatatgaatgtaagaaatgtgggaaa
aacttcactcaatcttcagcacttgctaaacatctaagaactaaggcatgtgaaaaaacc
tga

>gi568815579r:9754189_9960797|GENSCAN_predicted_peptide_2|326_aa
MATLVELPDSVLLEIFSYLPVRDRIRISRVCHRWKRLVDDRWLWRHVDLTLYTMRPKVMW
HLLRRYMASRLHSLRMGGYLFSGSQAPQLSPALLRALGQKCPNLKRLCLHVADLSMVPIT
SLPSTLRTLELHSCEISMAWLHKQQDPTVLPLLECIVLDRVPAFRDEHLQGLTRFRALRS
LVLGGTYRVTETGLDAGLQELSYLQRLEVLGCTLSADSTLLAISRHLRDVRKIRLTVRGL
SAPGLAVLEGMPALESLCLQGPLVTPEMPSPTEILSSCLTMPKLRVLELQGLGWEGQEAE
KILCKGLPHCMVIVRACPKESMDWWM

>gi568815579r:9754189_9960797|GENSCAN_predicted_CDS_2|981_bp
atggcgactttggtcgaactgccggactcggtcctgctcgagatcttctcttacctcccg
gtacgggaccggatccgcatctccagggtctgtcaccgctggaagaggctggtggacgac
cggtggctgtggcgacatgtcgacctgacgctctacacgatgcgacctaaagtcatgtgg
cacctccttcgaaggtacatggcatcccggctccattccctgcggatgggtggctacctg
ttctctggctcccaggccccccagttgtcccctgctctgttgagagccctgggccagaag
tgccccaacctgaagcgcctctgcctgcacgtggccgacctgagcatggtgcccatcacc
agcctgcccagcaccttgaggaccctggagctgcacagctgcgagatctccatggcctgg
ctccacaagcagcaggaccccaccgtgctgcccctgcttgaatgcatcgtgctggaccgc
gtccccgccttccgtgacgagcacctgcagggcctgacgcgcttccgggccttgcgctcg
ctggtgctgggtggtacctaccgtgtgaccgagacagggctggatgctggcctgcaggag
ctcagctatctgcagaggcttgaggtgctgggctgcaccctgtctgccgacagcaccctg
ctggccatcagccgccacctccgagatgtgcgcaagatccggctgaccgtgaggggcctc
tctgcccctggcctggctgtgctggagggaatgccggccctggagagtctgtgcctgcag
ggtcccctcgtcaccccagaaatgccctcccccactgaaatcctctcctcctgcctcact
atgcccaagctcagagtccttgagctgcaggggctggggtgggagggtcaggaggcggag
aagatcctgtgtaaggggctgccccactgtatggtcatcgtcagggcttgccccaaagag
tctatggactggtggatgtaa

>gi568815579r:9754189_9960797|GENSCAN_predicted_peptide_3|79_aa
MSIRTKLQNKEHAIEALRRAKFKFPGRQKIYISKKWGFTKFNADEFEDMVAEKRLIPDGC
GVKYIPNRGPLDKWLALHS

>gi568815579r:9754189_9960797|GENSCAN_predicted_CDS_3|240_bp
atgtccatccgcaccaagctgcagaacaaggagcatgcgattgaggccttgcgcagggcc
aagttcaagtttcctggccgccagaagatctacatctcaaagaagtggggcttcaccaag
ttcaatgctgatgaatttgaagacatggtggctgagaagcggctcatcccagatggctgt
ggggtcaagtacatccccaatcgtggccctctggacaagtggctggccctgcactcatga

>gi568815579r:9754189_9960797|GENSCAN_predicted_peptide_4|102_aa
MNGGGSQAHRGQRHQEPGTVRHHAVTAAVGQRRVYSRIKLRLLTGVRIPGERDGQREELP
LQEASGSGSGAYPYSRDPLASPPCDRVSLQQTMTSNELGAGA

>gi568815579r:9754189_9960797|GENSCAN_predicted_CDS_4|309_bp
atgaatggaggcggctctcaagcacacaggggccaaagacaccaagagcctggaactgtc
cggcaccatgcggtaacagcagctgttgggcagcgtagagtctactctaggatcaagctt
cgcctactgactggagtccgtatcccgggggaacgcgatggccagagggaagagttgccg
ctgcaagaggcttcgggctcaggatcaggagcttacccctactcccgggaccctctggcg
tccccaccatgtgaccgagtctccctgcaacaaacaatgacttcaaacgagctgggcgcc
ggcgcctga

>gi568815579r:9754189_9960797|GENSCAN_predicted_peptide_5|205_aa
MADEEKLPPGWEKRMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEPARVRCSHL
LVKHSQSRRPSSWRQEKITRTKEEALELINGIPVAVSPALAAGGCGKVMLVQGLGLAPQT
LSACRQSCFPEVGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDAS
FALRTGEMSGPVFTDSGIHIILRTE

>gi568815579r:9754189_9960797|GENSCAN_predicted_CDS_5|618_bp
atggcggacgaggagaagctgccgcccggctgggagaagcgcatgagccgcagctcaggc
cgagtgtactacttcaaccacatcactaacgccagccagtgggagcggcccagcggcaac
agcagcagtggtggcaaaaacgggcagggggagcctgccagggtccgctgctcgcacctg
ctggtgaagcacagccagtcacggcggccctcgtcctggcggcaggagaagatcacccgg
accaaggaggaggccctggagctgatcaacgggatccctgtggctgtgtccccagccctg
gccgctgggggctgtggcaaggtgatgcttgttcagggcctgggcctggctcctcagacg
ctcagtgcctgcaggcagtcctgcttccccgaagtaggctacatccagaagatcaagtcg
ggagaggaggactttgagtctctggcctcacagttcagcgactgcagctcagccaaggcc
aggggagacctgggtgccttcagcagaggtcagatgcagaagccatttgaagacgcctcg
tttgcgctgcggacgggggagatgagcgggcccgtgttcacggattccggcatccacatc
atcctccgcactgagtga

>gi568815579r:9754189_9960797|GENSCAN_predicted_peptide_6|521_aa
MSVPLLKIGAVLSTMAMVTNWMSQTLPSLVGLNGTVSRAGASEKIDTENRINDQLSLSEL
AAKELGAKLMARPYADCSEQPEVTVNTQTLFQNPEEGWQLYTSAQAPDGKCICTAVIPAQ
STCSRDGRSRELRQLMEKVQNVSQSMEVLELRTYRDLQYVRGMETLMRSLDARLRAADGS
LSAKSFQELKDRMTELLPLSSVLEQYKADTRTIVRLREEVRNLSGSLAAIQEEMGAYGYE
DLQQRVMALEARLHACAQKLGCGKLTGVSNPITVRAMGSRFGSWMTDTMAPSADSRVWYM
DGYYKGRRVLEFRTLGDFIKGQNFIQHLLPQPWAGTGHVVYNGSLFYNKYQSNVVVKYHF
RSRSVLVQRSLPGAGYNNTFPYSWGGFSDMDFMVDESGLWAVYTTNQNAGNIVVSRLDPH
TLEVMRSWDTGYPKRSAGEAFMICGVLYVTNSHLAGAKVYFAYFTNTSSYEYTDVPFHNQ
YSHISMLDYNPRERALYTWNNGHQVLYNVTLFHVISTSGDP

>gi568815579r:9754189_9960797|GENSCAN_predicted_CDS_6|1566_bp
atgtcggtgccgctgctcaagatcggggccgtgctgagcaccatggccatggtcaccaac
tggatgtcgcagacgctgccctcgctcgtggggctcaacggcaccgtgtcccgtgcgggc
gcctctgagaaaatcgacactgagaaccgcataaatgaccagctttccctttctgagttg
gctgctaaggagcttggagccaaacttatggcccggccatatgctgattgttcagagcag
ccagaggtcactgtgaacacccaaactctcttccagaacccagaagagggctggcagctg
tacacctcagcccaggcccctgacgggaaatgcatctgcacggccgtgatcccagcgcag
agtacctgctctcgagatggcaggagtcgggagctgcggcaactgatggagaaggtccag
aacgtctcccagtccatggaggtccttgagttgcggacgtatcgcgacctccagtatgta
cgcggcatggagaccctcatgcggagcctggatgcgcggctccgggcagctgatgggtcc
ctctcggccaagagcttccaggagctgaaggacaggatgacggaactgttgcccctgagc
tcggtcctggagcagtacaaggcagacacgcggaccattgtacgcttgcgggaggaggtg
aggaatctctccggcagtctggcggccattcaggaggagatgggtgcctacgggtatgag
gacctgcagcaacgggtgatggccctggaggcccggctccacgcctgcgcccagaagctg
ggctgtgggaagctgaccggggtcagtaaccccatcaccgttcgggccatggggtcccgc
ttcggctcctggatgactgacacgatggcccccagtgcggatagccgggtctggtacatg
gatggctattacaaaggccgccgggtcctggagttccgtaccctgggagacttcatcaaa
ggccagaactttatccagcacctgctgccccagccgtgggcgggcacgggccacgtggtg
tacaacggctccctgttctataacaagtaccagagcaacgtggtggtcaaataccacttc
cgctcgcgctctgtgctggtgcagaggagcctcccgggcgccggttacaacaacaccttc
ccctactcctggggcggcttctccgacatggacttcatggtggacgagagcgggctctgg
gctgtgtacaccaccaaccagaacgcgggcaacatcgtggtcagccggctggacccgcac
accctcgaggtcatgcggtcctgggacaccggctaccccaagcgcagcgctggcgaggcc
ttcatgatctgcggtgtgctctacgtgaccaactcccacctggctggggccaaggtctac
ttcgcctattttaccaacacgtccagttacgagtacacggacgtgcccttccacaaccag
tattcccacatctcgatgctggattacaacccccgggagcgcgccctctatacctggaac
aacggccaccaggtgctctacaatgtcaccctgtttcacgtcatcagcacctctggggac
ccctga

>gi568815579r:9754189_9960797|GENSCAN_predicted_peptide_7|55_aa
MWPLTVPPPLLLLLCSGLAGQACVCGVMRVCVCLVTVCMFRDHEHRDMLVSSSHQ

>gi568815579r:9754189_9960797|GENSCAN_predicted_CDS_7|168_bp
atgtggccgctcacggtcccgccgccgctgctgctgctgctgtgctcaggcctggccgga
caggcatgtgtctgtggtgtcatgcgtgtatgtgtatgtttggtgactgtgtgcatgttc
agggaccatgagcacagggacatgcttgtatcatcatcacaccagtga

>gi568815579r:9754189_9960797|GENSCAN_predicted_peptide_8|80_aa
XHSARFLGTNGEELSFNQTTAATVSVPQDGCRLRKGQTKTLFEFSSSRAGFLPLWDVAAT
DFGQTNQKFGFELGPVCFSS

>gi568815579r:9754189_9960797|GENSCAN_predicted_CDS_8|243_bp
nnccactccgcccgcttccttggcaccaatggagaggagctgtctttcaaccagacgaca
gcagccactgtcagcgtcccccaggatggctgccggctccggaaaggacagacgaagacc
cttttcgaattcagctcttctcgagcgggatttctgcccctgtgggatgtggcggccact
gactttggccagacgaaccaaaagtttgggtttgaactgggccccgtctgcttcagcagc
tga