Result of FASTA (omim) for pF1KB4623
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB4623, 520 aa
  1>>>pF1KB4623 520 - 520 aa - 520 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0189+/-0.000443; mu= 20.3850+/- 0.027
 mean_var=65.8367+/-13.460, 0's: 0 Z-trim(109.0): 23  B-trim: 945 in 1/52
 Lambda= 0.158067
 statistics sampled from 17161 (17172) to 17161 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.556), E-opt: 0.2 (0.201), width:  16
 Scan time:  6.840

The best scores are:                                      opt bits E(85289)
NP_000427 (OMIM: 245050,601424) succinyl-CoA:3-ket ( 520) 3403 785.4       0
XP_016864983 (OMIM: 245050,601424) PREDICTED: succ ( 490) 2736 633.3  5e-181
NP_071403 (OMIM: 610289) succinyl-CoA:3-ketoacid c ( 517) 2577 597.0 4.3e-170


>>NP_000427 (OMIM: 245050,601424) succinyl-CoA:3-ketoaci  (520 aa)
 initn: 3403 init1: 3403 opt: 3403  Z-score: 4192.7  bits: 785.4 E(85289):    0
Smith-Waterman score: 3403; 100.0% identity (100.0% similar) in 520 aa overlap (1-520:1-520)

               10        20        30        40        50        60
pF1KB4 MAALKLLSSGLRLCASARGSGATWYKGCVCSFSTSAHRHTKFYTDPVEAVKDIPDGATVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MAALKLLSSGLRLCASARGSGATWYKGCVCSFSTSAHRHTKFYTDPVEAVKDIPDGATVL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 VGGFGLCGIPENLIDALLKTGVKGLTAVSNNAGVDNFGLGLLLRSKQIKRMVSSYVGENA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 VGGFGLCGIPENLIDALLKTGVKGLTAVSNNAGVDNFGLGLLLRSKQIKRMVSSYVGENA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 EFERQYLSGELEVELTPQGTLAERIRAGGAGVPAFYTPTGYGTLVQEGGSPIKYNKDGSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 EFERQYLSGELEVELTPQGTLAERIRAGGAGVPAFYTPTGYGTLVQEGGSPIKYNKDGSV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB4 AIASKPREVREFNGQHFILEEAITGDFALVKAWKADRAGNVIFRKSARNFNLPMCKAAET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 AIASKPREVREFNGQHFILEEAITGDFALVKAWKADRAGNVIFRKSARNFNLPMCKAAET
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB4 TVVEVEEIVDIGAFAPEDIHIPQIYVHRLIKGEKYEKRIERLSIRKEGDGEAKSAKPGDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 TVVEVEEIVDIGAFAPEDIHIPQIYVHRLIKGEKYEKRIERLSIRKEGDGEAKSAKPGDD
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB4 VRERIIKRAALEFEDGMYANLGIGIPLLASNFISPNITVHLQSENGVLGLGPYPRQHEAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 VRERIIKRAALEFEDGMYANLGIGIPLLASNFISPNITVHLQSENGVLGLGPYPRQHEAD
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB4 ADLINAGKETVTILPGASFFSSDESFAMIRGGHVDLTMLGAMQVSKYGDLANWMIPGKMV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 ADLINAGKETVTILPGASFFSSDESFAMIRGGHVDLTMLGAMQVSKYGDLANWMIPGKMV
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB4 KGMGGAMDLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITEKAVFDVDK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 KGMGGAMDLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITEKAVFDVDK
              430       440       450       460       470       480

              490       500       510       520
pF1KB4 KKGLTLIELWEGLTVDDVQKSTGCDFAVSPKLMPMQQIAN
       ::::::::::::::::::::::::::::::::::::::::
NP_000 KKGLTLIELWEGLTVDDVQKSTGCDFAVSPKLMPMQQIAN
              490       500       510       520

>>XP_016864983 (OMIM: 245050,601424) PREDICTED: succinyl  (490 aa)
 initn: 2732 init1: 2732 opt: 2736  Z-score: 3371.0  bits: 633.3 E(85289): 5e-181
Smith-Waterman score: 3149; 94.2% identity (94.2% similar) in 520 aa overlap (1-520:1-490)

               10        20        30        40        50        60
pF1KB4 MAALKLLSSGLRLCASARGSGATWYKGCVCSFSTSAHRHTKFYTDPVEAVKDIPDGATVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MAALKLLSSGLRLCASARGSGATWYKGCVCSFSTSAHRHTKFYTDPVEAVKDIPDGATVL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 VGGFGLCGIPENLIDALLKTGVKGLTAVSNNAGVDNFGLGLLLRSKQIKRMVSSYVGENA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VGGFGLCGIPENLIDALLKTGVKGLTAVSNNAGVDNFGLGLLLRSKQIKRMVSSYVGENA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 EFERQYLSGELEVELTPQGTLAERIRAGGAGVPAFYTPTGYGTLVQEGGSPIKYNKDGSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EFERQYLSGELEVELTPQGTLAERIRAGGAGVPAFYTPTGYGTLVQEGGSPIKYNKDGSV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB4 AIASKPREVREFNGQHFILEEAITGDFALVKAWKADRAGNVIFRKSARNFNLPMCKAAET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AIASKPREVREFNGQHFILEEAITGDFALVKAWKADRAGNVIFRKSARNFNLPMCKAAET
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB4 TVVEVEEIVDIGAFAPEDIHIPQIYVHRLIKGEKYEKRIERLSIRKEGDGEAKSAKPGDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TVVEVEEIVDIGAFAPEDIHIPQIYVHRLIKGEKYEKRIERLSIRKEGDGEAKSAKPGDD
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB4 VRERIIKRAALEFEDGMYANLGIGIPLLASNFISPNITVHLQSENGVLGLGPYPRQHEAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VRERIIKRAALEFEDGMYANLGIGIPLLASNFISPNITVHLQSENGVLGLGPYPRQHEAD
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB4 ADLINAGKETVTILPGASFFSSDESFAMIRGGHVDLTMLGAMQVSKYGDLANWMIPGKMV
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::   
XP_016 ADLINAGKETVTILPGASFFSSDESFAMIRGGHVDLTMLGAMQVSKYGDLANWMIPG---
              370       380       390       400       410          

              430       440       450       460       470       480
pF1KB4 KGMGGAMDLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITEKAVFDVDK
                                  :::::::::::::::::::::::::::::::::
XP_016 ---------------------------NAHKIMEKCTLPLTGKQCVNRIITEKAVFDVDK
                                  420       430       440       450

              490       500       510       520
pF1KB4 KKGLTLIELWEGLTVDDVQKSTGCDFAVSPKLMPMQQIAN
       ::::::::::::::::::::::::::::::::::::::::
XP_016 KKGLTLIELWEGLTVDDVQKSTGCDFAVSPKLMPMQQIAN
              460       470       480       490

>>NP_071403 (OMIM: 610289) succinyl-CoA:3-ketoacid coenz  (517 aa)
 initn: 2594 init1: 1386 opt: 2577  Z-score: 3174.7  bits: 597.0 E(85289): 4.3e-170
Smith-Waterman score: 2577; 74.4% identity (90.2% similar) in 519 aa overlap (1-519:1-516)

               10        20        30        40        50        60
pF1KB4 MAALKLLSSGLRLCASARGSGATWYKGCVCSFSTSAHRHTKFYTDPVEAVKDIPDGATVL
       ::::.::.: :   . : ::: .  .::.  :.:: . ..:::.:::: :::: :::::.
NP_071 MAALRLLASVLGRGVPAGGSGLALSQGCARCFATSPRLRAKFYADPVEMVKDISDGATVM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 VGGFGLCGIPENLIDALLKTGVKGLTAVSNNAGVDNFGLGLLLRSKQIKRMVSSYVGENA
       .::::::::::::: :::.: :: : .::.:.::..::::::: ..:..:.: ::::::.
NP_071 IGGFGLCGIPENLIAALLRTRVKDLQVVSSNVGVEDFGLGLLLAARQVRRIVCSYVGENT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 EFERQYLSGELEVELTPQGTLAERIRAGGAGVPAFYTPTGYGTLVQEGGSPIKYNKDGSV
         : :::.::::.::::::::::::::::::::::::::::::::::::.::.:. :: .
NP_071 LCESQYLAGELELELTPQGTLAERIRAGGAGVPAFYTPTGYGTLVQEGGAPIRYTPDGHL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB4 AIASKPREVREFNGQHFILEEAITGDFALVKAWKADRAGNVIFRKSARNFNLPMCKAAET
       :. :.:::::::::.::.::.:: .::::::.:::::::::.::.::::::.::::::..
NP_071 ALMSQPREVREFNGDHFLLERAIRADFALVKGWKADRAGNVVFRRSARNFNVPMCKAADV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB4 TVVEVEEIVDIGAFAPEDIHIPQIYVHRLIKGEKYEKRIERLSIRKEGDGEAKSAKPGDD
       :.:::::::..::: :::::.:.::: :.:::.:::::::::.: :: ::.: .    .:
NP_071 TAVEVEEIVEVGAFPPEDIHVPNIYVDRVIKGQKYEKRIERLTILKEEDGDAGKE---ED
              250       260       270       280       290          

              310       320       330       340       350       360
pF1KB4 VRERIIKRAALEFEDGMYANLGIGIPLLASNFISPNITVHLQSENGVLGLGPYPRQHEAD
       .: :::.::::::::::::::::::::::::::::..::::.::::.:::::.: . :.:
NP_071 ARTRIIRRAALEFEDGMYANLGIGIPLLASNFISPSMTVHLHSENGILGLGPFPTEDEVD
       300       310       320       330       340       350       

              370       380       390       400       410       420
pF1KB4 ADLINAGKETVTILPGASFFSSDESFAMIRGGHVDLTMLGAMQVSKYGDLANWMIPGKMV
       ::::::::.:::.:::. ::.::.:::::::::..::::::::::::::::::::::: :
NP_071 ADLINAGKQTVTVLPGGCFFASDDSFAMIRGGHIQLTMLGAMQVSKYGDLANWMIPGKKV
       360       370       380       390       400       410       

              430       440       450       460       470       480
pF1KB4 KGMGGAMDLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITEKAVFDVDK
       :::::::::::: ::.:::::.: .: :. :::::::.:::::.::.::::::::::: .
NP_071 KGMGGAMDLVSSQKTRVVVTMQHCTKDNTPKIMEKCTMPLTGKRCVDRIITEKAVFDVHR
       420       430       440       450       460       470       

              490       500       510       520
pF1KB4 KKGLTLIELWEGLTVDDVQKSTGCDFAVSPKLMPMQQIAN
       :: ::: ::::::::::..::::: :::::.: ::::.: 
NP_071 KKELTLRELWEGLTVDDIKKSTGCAFAVSPNLRPMQQVAP
       480       490       500       510       




520 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 05:56:31 2016 done: Sat Nov  5 05:56:32 2016
 Total Scan time:  6.840 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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