Result of FASTA (ccds) for pF1KB8711
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8711, 482 aa
  1>>>pF1KB8711 482 - 482 aa - 482 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.8167+/-0.000934; mu= 11.4007+/- 0.056
 mean_var=102.6412+/-20.183, 0's: 0 Z-trim(107.5): 22  B-trim: 2 in 1/49
 Lambda= 0.126594
 statistics sampled from 9584 (9597) to 9584 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.666), E-opt: 0.2 (0.295), width:  16
 Scan time:  2.910

The best scores are:                                      opt bits E(32554)
CCDS64595.1 ICA1 gene_id:3382|Hs108|chr7           ( 482) 3204 595.8 3.3e-170
CCDS34602.1 ICA1 gene_id:3382|Hs108|chr7           ( 483) 3192 593.6 1.5e-169
CCDS2354.1 ICA1L gene_id:130026|Hs108|chr2         ( 482) 1335 254.5 1.9e-67
CCDS74632.1 ICA1L gene_id:130026|Hs108|chr2        ( 187)  833 162.6 3.3e-40


>>CCDS64595.1 ICA1 gene_id:3382|Hs108|chr7                (482 aa)
 initn: 3204 init1: 3204 opt: 3204  Z-score: 3169.2  bits: 595.8 E(32554): 3.3e-170
Smith-Waterman score: 3204; 100.0% identity (100.0% similar) in 482 aa overlap (1-482:1-482)

               10        20        30        40        50        60
pF1KB8 MSGHKCYPWDLQDRYAQDKSVVNKMQQKYWETKQAFIKATGKKEDEHVVASDADLDAKLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 MSGHKCYPWDLQDRYAQDKSVVNKMQQKYWETKQAFIKATGKKEDEHVVASDADLDAKLE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 LFHSIQRTCLDLSKAIVLYQKRICFLSQEENELGKFLRSQGFQDKTRAGKMMQATGKALC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 LFHSIQRTCLDLSKAIVLYQKRICFLSQEENELGKFLRSQGFQDKTRAGKMMQATGKALC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 FSSQQRLALRNPLCRFHQEVETFRHRAISDTWLTVNRMEQCRTEYRGALLWMKDVSQELD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 FSSQQRLALRNPLCRFHQEVETFRHRAISDTWLTVNRMEQCRTEYRGALLWMKDVSQELD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 PDLYKQMEKFRKVQTQVRLAKKNFDKLKMDVCQKVDLLGASRCNLLSHMLATYQTTLLHF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 PDLYKQMEKFRKVQTQVRLAKKNFDKLKMDVCQKVDLLGASRCNLLSHMLATYQTTLLHF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 WEKTSHTMAAIHESFKGYQPYEFTTLKSLQDPMKKLVEKEEKKKINQQESTDAAVQEPSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 WEKTSHTMAAIHESFKGYQPYEFTTLKSLQDPMKKLVEKEEKKKINQQESTDAAVQEPSQ
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 LISLEEENQRKESSSFKTEDGKSILSALDKGSTHTACSGPIDELLDMKSEEGACLGPVAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 LISLEEENQRKESSSFKTEDGKSILSALDKGSTHTACSGPIDELLDMKSEEGACLGPVAG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 TPEPEGADKDDLLLLSEIFNASSLEEGEFSKEWAAVFGDGQVKEPVPTMALGEPDPKAQT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 TPEPEGADKDDLLLLSEIFNASSLEEGEFSKEWAAVFGDGQVKEPVPTMALGEPDPKAQT
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB8 GSGFLPSQLLDQNMKDLQASLQEPAKAASDLTAWFSLFADLDPLSNPDAVGKTDKEHELL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 GSGFLPSQLLDQNMKDLQASLQEPAKAASDLTAWFSLFADLDPLSNPDAVGKTDKEHELL
              430       440       450       460       470       480

         
pF1KB8 NA
       ::
CCDS64 NA
         

>>CCDS34602.1 ICA1 gene_id:3382|Hs108|chr7                (483 aa)
 initn: 3190 init1: 3155 opt: 3192  Z-score: 3157.4  bits: 593.6 E(32554): 1.5e-169
Smith-Waterman score: 3192; 99.8% identity (99.8% similar) in 483 aa overlap (1-482:1-483)

                10        20        30        40        50         
pF1KB8 MSGHKC-YPWDLQDRYAQDKSVVNKMQQKYWETKQAFIKATGKKEDEHVVASDADLDAKL
       :::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MSGHKCSYPWDLQDRYAQDKSVVNKMQQKYWETKQAFIKATGKKEDEHVVASDADLDAKL
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KB8 ELFHSIQRTCLDLSKAIVLYQKRICFLSQEENELGKFLRSQGFQDKTRAGKMMQATGKAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 ELFHSIQRTCLDLSKAIVLYQKRICFLSQEENELGKFLRSQGFQDKTRAGKMMQATGKAL
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KB8 CFSSQQRLALRNPLCRFHQEVETFRHRAISDTWLTVNRMEQCRTEYRGALLWMKDVSQEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 CFSSQQRLALRNPLCRFHQEVETFRHRAISDTWLTVNRMEQCRTEYRGALLWMKDVSQEL
              130       140       150       160       170       180

     180       190       200       210       220       230         
pF1KB8 DPDLYKQMEKFRKVQTQVRLAKKNFDKLKMDVCQKVDLLGASRCNLLSHMLATYQTTLLH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 DPDLYKQMEKFRKVQTQVRLAKKNFDKLKMDVCQKVDLLGASRCNLLSHMLATYQTTLLH
              190       200       210       220       230       240

     240       250       260       270       280       290         
pF1KB8 FWEKTSHTMAAIHESFKGYQPYEFTTLKSLQDPMKKLVEKEEKKKINQQESTDAAVQEPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 FWEKTSHTMAAIHESFKGYQPYEFTTLKSLQDPMKKLVEKEEKKKINQQESTDAAVQEPS
              250       260       270       280       290       300

     300       310       320       330       340       350         
pF1KB8 QLISLEEENQRKESSSFKTEDGKSILSALDKGSTHTACSGPIDELLDMKSEEGACLGPVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 QLISLEEENQRKESSSFKTEDGKSILSALDKGSTHTACSGPIDELLDMKSEEGACLGPVA
              310       320       330       340       350       360

     360       370       380       390       400       410         
pF1KB8 GTPEPEGADKDDLLLLSEIFNASSLEEGEFSKEWAAVFGDGQVKEPVPTMALGEPDPKAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GTPEPEGADKDDLLLLSEIFNASSLEEGEFSKEWAAVFGDGQVKEPVPTMALGEPDPKAQ
              370       380       390       400       410       420

     420       430       440       450       460       470         
pF1KB8 TGSGFLPSQLLDQNMKDLQASLQEPAKAASDLTAWFSLFADLDPLSNPDAVGKTDKEHEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 TGSGFLPSQLLDQNMKDLQASLQEPAKAASDLTAWFSLFADLDPLSNPDAVGKTDKEHEL
              430       440       450       460       470       480

     480  
pF1KB8 LNA
       :::
CCDS34 LNA
          

>>CCDS2354.1 ICA1L gene_id:130026|Hs108|chr2              (482 aa)
 initn: 1378 init1: 1212 opt: 1335  Z-score: 1324.4  bits: 254.5 E(32554): 1.9e-67
Smith-Waterman score: 1377; 49.5% identity (71.9% similar) in 501 aa overlap (12-482:6-482)

               10        20        30        40        50        60
pF1KB8 MSGHKCYPWDLQDRYAQDKSVVNKMQQKYWETKQAFIKATGKKEDEHVVASDADLDAKLE
                  : :  ...::: .::.:::.:::.::::::::::::.:::::.::::::
CCDS23       MDSFGQPRPEDNQSVVRRMQKKYWKTKQVFIKATGKKEDEHLVASDAELDAKLE
                     10        20        30        40        50    

               70        80        90       100       110       120
pF1KB8 LFHSIQRTCLDLSKAIVLYQKRICFLSQEENELGKFLRSQGFQDKTRAGKMMQATGKALC
       .:::.:.:: .: : :  :: :.  .:.:::::: ::. :. .: :.:::::.:::::::
CCDS23 VFHSVQETCTELLKIIEKYQLRLNVISEEENELGLFLKFQAERDATQAGKMMDATGKALC
           60        70        80        90       100       110    

              130       140       150       160       170       180
pF1KB8 FSSQQRLALRNPLCRFHQEVETFRHRAISDTWLTVNRMEQCRTEYRGALLWMKDVSQELD
        :..::::: .:: :..::: :: .::.::: .:.::::: :::::::::::::::::::
CCDS23 SSAKQRLALCTPLSRLKQEVATFSQRAVSDTLMTINRMEQARTEYRGALLWMKDVSQELD
          120       130       140       150       160       170    

              190       200       210       220       230       240
pF1KB8 PDLYKQMEKFRKVQTQVRLAKKNFDKLKMDVCQKVDLLGASRCNLLSHMLATYQTTLLHF
       ::  :::::::::: ::: .: .:::::::::::::::::::::.::: :.::: ::: :
CCDS23 PDTLKQMEKFRKVQMQVRNSKASFDKLKMDVCQKVDLLGASRCNMLSHSLTTYQRTLLGF
          180       190       200       210       220       230    

              250       260       270       280       290       300
pF1KB8 WEKTSHTMAAIHESFKGYQPYEFTTLKSLQDPMKKLVEKEEKKKINQQESTDAAVQEPSQ
       :.::.. :. :::.  :..::.:..::.:::  .:. : .. ..:.        ... ..
CCDS23 WKKTARMMSQIHEACIGFHPYDFVALKQLQDTPSKISEDNKDEQIG-----GFLTEQLNK
          240       250       260       270       280              

              310       320       330       340       350       360
pF1KB8 LISLEEENQRKESSSFKTEDGKSILSALDKGSTHTACSGPIDELLDMKSEEGACLGPVAG
       :.  .::      .::..:....  .  .: :     ..:  .. .  ::. :   :: .
CCDS23 LVLSDEE------ASFESEQANKDHN--EKHSQMREFGAP--QFSN--SENVAKDLPVDS
     290             300         310       320           330       

               370       380       390       400       410         
pF1KB8 TPEPEGAD-KDDLLLLSEIFNASSLEEGEFSKEWAAVFGDGQVKEPVPTMALGEPDPKAQ
           :: : . .. .:.......:   .::..:  ..::. ...      ..:  .: :.
CCDS23 L---EGEDFEKEFSFLNNLLSSGSSSTSEFTQECQTAFGSPSASLTSQEPSMGS-EPLAH
          340       350       360       370       380        390   

     420       430                     440                      450
pF1KB8 TGSGFLPSQLLD--------------QNMKDLQASL--------QEPAK-------AASD
       . : ::::::.:              :. ..:  :         : : :       . .:
CCDS23 S-SRFLPSQLFDLGFHVAGAFNNWVSQEESELCLSHTDNQPVPSQSPKKLTRSPNNGNQD
            400       410       420       430       440       450  

              460       470       480  
pF1KB8 LTAWFSLFADLDPLSNPDAVGKTDKEHELLNA
       ..:::.:::::::::::::.:..: :  ::::
CCDS23 MSAWFNLFADLDPLSNPDAIGHSDDE--LLNA
            460       470         480  

>>CCDS74632.1 ICA1L gene_id:130026|Hs108|chr2             (187 aa)
 initn: 833 init1: 833 opt: 833  Z-score: 835.3  bits: 162.6 E(32554): 3.3e-40
Smith-Waterman score: 833; 69.8% identity (86.3% similar) in 182 aa overlap (12-193:6-187)

               10        20        30        40        50        60
pF1KB8 MSGHKCYPWDLQDRYAQDKSVVNKMQQKYWETKQAFIKATGKKEDEHVVASDADLDAKLE
                  : :  ...::: .::.:::.:::.::::::::::::.:::::.::::::
CCDS74       MDSFGQPRPEDNQSVVRRMQKKYWKTKQVFIKATGKKEDEHLVASDAELDAKLE
                     10        20        30        40        50    

               70        80        90       100       110       120
pF1KB8 LFHSIQRTCLDLSKAIVLYQKRICFLSQEENELGKFLRSQGFQDKTRAGKMMQATGKALC
       .:::.:.:: .: : :  :: :.  .:.:::::: ::. :. .: :.:::::.:::::::
CCDS74 VFHSVQETCTELLKIIEKYQLRLNVISEEENELGLFLKFQAERDATQAGKMMDATGKALC
           60        70        80        90       100       110    

              130       140       150       160       170       180
pF1KB8 FSSQQRLALRNPLCRFHQEVETFRHRAISDTWLTVNRMEQCRTEYRGALLWMKDVSQELD
        :..::::: .:: :..::: :: .::.::: .:.::::: :::::::::::::::::::
CCDS74 SSAKQRLALCTPLSRLKQEVATFSQRAVSDTLMTINRMEQARTEYRGALLWMKDVSQELD
          120       130       140       150       160       170    

              190       200       210       220       230       240
pF1KB8 PDLYKQMEKFRKVQTQVRLAKKNFDKLKMDVCQKVDLLGASRCNLLSHMLATYQTTLLHF
       ::  :::::::::                                               
CCDS74 PDTLKQMEKFRKV                                               
          180                                                      




482 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 21:34:29 2016 done: Sat Nov  5 21:34:30 2016
 Total Scan time:  2.910 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]
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