Result of FASTA (omim) for pF1KB6318
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6318, 281 aa
  1>>>pF1KB6318 281 - 281 aa - 281 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4909+/-0.000327; mu= 15.2085+/- 0.020
 mean_var=79.2712+/-16.419, 0's: 0 Z-trim(115.8): 39  B-trim: 1289 in 1/55
 Lambda= 0.144051
 statistics sampled from 26457 (26495) to 26457 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.697), E-opt: 0.2 (0.311), width:  16
 Scan time:  7.040

The best scores are:                                      opt bits E(85289)
NP_056286 (OMIM: 609174) kinetochore-associated pr ( 281) 1878 399.5 3.7e-111
XP_016856457 (OMIM: 609174) PREDICTED: kinetochore ( 178) 1190 256.4 2.9e-68
XP_016856458 (OMIM: 609174) PREDICTED: kinetochore ( 178) 1190 256.4 2.9e-68
NP_001284666 (OMIM: 609174) kinetochore-associated ( 172) 1109 239.5 3.3e-63
NP_001284668 (OMIM: 609174) kinetochore-associated ( 178) 1109 239.5 3.3e-63
NP_001036014 (OMIM: 609174) kinetochore-associated ( 213) 1109 239.6 3.9e-63
NP_001284665 (OMIM: 609174) kinetochore-associated ( 240)  970 210.7 2.1e-54


>>NP_056286 (OMIM: 609174) kinetochore-associated protei  (281 aa)
 initn: 1878 init1: 1878 opt: 1878  Z-score: 2116.6  bits: 399.5 E(85289): 3.7e-111
Smith-Waterman score: 1878; 99.3% identity (99.6% similar) in 281 aa overlap (1-281:1-281)

               10        20        30        40        50        60
pF1KB6 MAGFPELVVLDPPWDKELAAGTESQALVSATPREDFRVRCTSKRAVTEMLQLCGRFVQKL
       ::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 MAGSPELVVLDPPWDKELAAGTESQALVSATPREDFRVRCTSKRAVTEMLQLCGRFVQKL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 GDALPEEIREPALRDAQWTFESAVQENISINGQAWQEASDNCFMDSDIKVLEDQFDEIIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 GDALPEEIREPALRDAQWTFESAVQENISINGQAWQEASDNCFMDSDIKVLEDQFDEIIV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 DIATKRKQYPRKILECVIKTIKAKQEILKQYHPVVHPLDLKYDPDPAPHMENLKCRGETV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 DIATKRKQYPRKILECVIKTIKAKQEILKQYHPVVHPLDLKYDPDPAPHMENLKCRGETV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 AKEISEAMKSLPALIEQGEGFSQVLRMQPVIHLQRIHQEVFSSCHRKPDAKPENFITQIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 AKEISEAMKSLPALIEQGEGFSQVLRMQPVIHLQRIHQEVFSSCHRKPDAKPENFITQIE
              190       200       210       220       230       240

              250       260       270       280 
pF1KB6 TTPTETASRKTSDVVLKRKQTKDCPQRKWYPLRPKKINLDT
       :::::::::::::.:::::::::::::::::::::::::::
NP_056 TTPTETASRKTSDMVLKRKQTKDCPQRKWYPLRPKKINLDT
              250       260       270       280 

>>XP_016856457 (OMIM: 609174) PREDICTED: kinetochore-ass  (178 aa)
 initn: 1190 init1: 1190 opt: 1190  Z-score: 1346.6  bits: 256.4 E(85289): 2.9e-68
Smith-Waterman score: 1190; 99.4% identity (100.0% similar) in 178 aa overlap (104-281:1-178)

            80        90       100       110       120       130   
pF1KB6 RDAQWTFESAVQENISINGQAWQEASDNCFMDSDIKVLEDQFDEIIVDIATKRKQYPRKI
                                     ::::::::::::::::::::::::::::::
XP_016                               MDSDIKVLEDQFDEIIVDIATKRKQYPRKI
                                             10        20        30

           140       150       160       170       180       190   
pF1KB6 LECVIKTIKAKQEILKQYHPVVHPLDLKYDPDPAPHMENLKCRGETVAKEISEAMKSLPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LECVIKTIKAKQEILKQYHPVVHPLDLKYDPDPAPHMENLKCRGETVAKEISEAMKSLPA
               40        50        60        70        80        90

           200       210       220       230       240       250   
pF1KB6 LIEQGEGFSQVLRMQPVIHLQRIHQEVFSSCHRKPDAKPENFITQIETTPTETASRKTSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LIEQGEGFSQVLRMQPVIHLQRIHQEVFSSCHRKPDAKPENFITQIETTPTETASRKTSD
              100       110       120       130       140       150

           260       270       280 
pF1KB6 VVLKRKQTKDCPQRKWYPLRPKKINLDT
       .:::::::::::::::::::::::::::
XP_016 MVLKRKQTKDCPQRKWYPLRPKKINLDT
              160       170        

>>XP_016856458 (OMIM: 609174) PREDICTED: kinetochore-ass  (178 aa)
 initn: 1190 init1: 1190 opt: 1190  Z-score: 1346.6  bits: 256.4 E(85289): 2.9e-68
Smith-Waterman score: 1190; 99.4% identity (100.0% similar) in 178 aa overlap (104-281:1-178)

            80        90       100       110       120       130   
pF1KB6 RDAQWTFESAVQENISINGQAWQEASDNCFMDSDIKVLEDQFDEIIVDIATKRKQYPRKI
                                     ::::::::::::::::::::::::::::::
XP_016                               MDSDIKVLEDQFDEIIVDIATKRKQYPRKI
                                             10        20        30

           140       150       160       170       180       190   
pF1KB6 LECVIKTIKAKQEILKQYHPVVHPLDLKYDPDPAPHMENLKCRGETVAKEISEAMKSLPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LECVIKTIKAKQEILKQYHPVVHPLDLKYDPDPAPHMENLKCRGETVAKEISEAMKSLPA
               40        50        60        70        80        90

           200       210       220       230       240       250   
pF1KB6 LIEQGEGFSQVLRMQPVIHLQRIHQEVFSSCHRKPDAKPENFITQIETTPTETASRKTSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LIEQGEGFSQVLRMQPVIHLQRIHQEVFSSCHRKPDAKPENFITQIETTPTETASRKTSD
              100       110       120       130       140       150

           260       270       280 
pF1KB6 VVLKRKQTKDCPQRKWYPLRPKKINLDT
       .:::::::::::::::::::::::::::
XP_016 MVLKRKQTKDCPQRKWYPLRPKKINLDT
              160       170        

>>NP_001284666 (OMIM: 609174) kinetochore-associated pro  (172 aa)
 initn: 1109 init1: 1109 opt: 1109  Z-score: 1255.9  bits: 239.5 E(85289): 3.3e-63
Smith-Waterman score: 1109; 99.4% identity (99.4% similar) in 166 aa overlap (1-166:1-166)

               10        20        30        40        50        60
pF1KB6 MAGFPELVVLDPPWDKELAAGTESQALVSATPREDFRVRCTSKRAVTEMLQLCGRFVQKL
       ::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAGSPELVVLDPPWDKELAAGTESQALVSATPREDFRVRCTSKRAVTEMLQLCGRFVQKL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 GDALPEEIREPALRDAQWTFESAVQENISINGQAWQEASDNCFMDSDIKVLEDQFDEIIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GDALPEEIREPALRDAQWTFESAVQENISINGQAWQEASDNCFMDSDIKVLEDQFDEIIV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 DIATKRKQYPRKILECVIKTIKAKQEILKQYHPVVHPLDLKYDPDPAPHMENLKCRGETV
       ::::::::::::::::::::::::::::::::::::::::::::::              
NP_001 DIATKRKQYPRKILECVIKTIKAKQEILKQYHPVVHPLDLKYDPDPVLACIN        
              130       140       150       160       170          

              190       200       210       220       230       240
pF1KB6 AKEISEAMKSLPALIEQGEGFSQVLRMQPVIHLQRIHQEVFSSCHRKPDAKPENFITQIE

>>NP_001284668 (OMIM: 609174) kinetochore-associated pro  (178 aa)
 initn: 1109 init1: 1109 opt: 1109  Z-score: 1255.7  bits: 239.5 E(85289): 3.3e-63
Smith-Waterman score: 1109; 99.4% identity (99.4% similar) in 166 aa overlap (1-166:1-166)

               10        20        30        40        50        60
pF1KB6 MAGFPELVVLDPPWDKELAAGTESQALVSATPREDFRVRCTSKRAVTEMLQLCGRFVQKL
       ::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAGSPELVVLDPPWDKELAAGTESQALVSATPREDFRVRCTSKRAVTEMLQLCGRFVQKL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 GDALPEEIREPALRDAQWTFESAVQENISINGQAWQEASDNCFMDSDIKVLEDQFDEIIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GDALPEEIREPALRDAQWTFESAVQENISINGQAWQEASDNCFMDSDIKVLEDQFDEIIV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 DIATKRKQYPRKILECVIKTIKAKQEILKQYHPVVHPLDLKYDPDPAPHMENLKCRGETV
       ::::::::::::::::::::::::::::::::::::::::::::::              
NP_001 DIATKRKQYPRKILECVIKTIKAKQEILKQYHPVVHPLDLKYDPDPGAKPGGLALGAV  
              130       140       150       160       170          

              190       200       210       220       230       240
pF1KB6 AKEISEAMKSLPALIEQGEGFSQVLRMQPVIHLQRIHQEVFSSCHRKPDAKPENFITQIE

>>NP_001036014 (OMIM: 609174) kinetochore-associated pro  (213 aa)
 initn: 1109 init1: 1109 opt: 1109  Z-score: 1254.6  bits: 239.6 E(85289): 3.9e-63
Smith-Waterman score: 1109; 99.4% identity (99.4% similar) in 166 aa overlap (1-166:1-166)

               10        20        30        40        50        60
pF1KB6 MAGFPELVVLDPPWDKELAAGTESQALVSATPREDFRVRCTSKRAVTEMLQLCGRFVQKL
       ::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAGSPELVVLDPPWDKELAAGTESQALVSATPREDFRVRCTSKRAVTEMLQLCGRFVQKL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 GDALPEEIREPALRDAQWTFESAVQENISINGQAWQEASDNCFMDSDIKVLEDQFDEIIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GDALPEEIREPALRDAQWTFESAVQENISINGQAWQEASDNCFMDSDIKVLEDQFDEIIV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 DIATKRKQYPRKILECVIKTIKAKQEILKQYHPVVHPLDLKYDPDPAPHMENLKCRGETV
       ::::::::::::::::::::::::::::::::::::::::::::::              
NP_001 DIATKRKQYPRKILECVIKTIKAKQEILKQYHPVVHPLDLKYDPDPVLNGNAFNFSPFNM
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 AKEISEAMKSLPALIEQGEGFSQVLRMQPVIHLQRIHQEVFSSCHRKPDAKPENFITQIE
                                                                   
NP_001 MLAVDLSYMVFITSSPSYGKFEMQRGNSSKGDQ                           
              190       200       210                              

>>NP_001284665 (OMIM: 609174) kinetochore-associated pro  (240 aa)
 initn: 1574 init1: 970 opt: 970  Z-score: 1097.7  bits: 210.7 E(85289): 2.1e-54
Smith-Waterman score: 1496; 84.7% identity (85.1% similar) in 281 aa overlap (1-281:1-240)

               10        20        30        40        50        60
pF1KB6 MAGFPELVVLDPPWDKELAAGTESQALVSATPREDFRVRCTSKRAVTEMLQLCGRFVQKL
       ::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAGSPELVVLDPPWDKELAAGTESQALVSATPREDFRVRCTSKRAVTEMLQLCGRFVQKL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 GDALPEEIREPALRDAQWTFESAVQENISINGQAWQEASDNCFMDSDIKVLEDQFDEIIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GDALPEEIREPALRDAQWTFESAVQENISINGQAWQEASDNCFMDSDIKVLEDQFDEIIV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 DIATKRKQYPRKILECVIKTIKAKQEILKQYHPVVHPLDLKYDPDPAPHMENLKCRGETV
       ::::::::::::::::::::::::::::                                
NP_001 DIATKRKQYPRKILECVIKTIKAKQEIL--------------------------------
              130       140                                        

              190       200       210       220       230       240
pF1KB6 AKEISEAMKSLPALIEQGEGFSQVLRMQPVIHLQRIHQEVFSSCHRKPDAKPENFITQIE
                :::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ---------SLPALIEQGEGFSQVLRMQPVIHLQRIHQEVFSSCHRKPDAKPENFITQIE
               150       160       170       180       190         

              250       260       270       280 
pF1KB6 TTPTETASRKTSDVVLKRKQTKDCPQRKWYPLRPKKINLDT
       :::::::::::::.:::::::::::::::::::::::::::
NP_001 TTPTETASRKTSDMVLKRKQTKDCPQRKWYPLRPKKINLDT
     200       210       220       230       240




281 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 07:33:52 2016 done: Sat Nov  5 07:33:53 2016
 Total Scan time:  7.040 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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