Result of FASTA (ccds) for pF1KB7921
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7921, 181 aa
  1>>>pF1KB7921 181 - 181 aa - 181 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.5325+/-0.000728; mu= 8.6682+/- 0.044
 mean_var=127.9414+/-25.075, 0's: 0 Z-trim(112.9): 57  B-trim: 0 in 0/54
 Lambda= 0.113388
 statistics sampled from 13536 (13593) to 13536 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.774), E-opt: 0.2 (0.418), width:  16
 Scan time:  2.170

The best scores are:                                      opt bits E(32554)
CCDS1506.1 ATF3 gene_id:467|Hs108|chr1             ( 181) 1171 201.7 2.1e-52
CCDS58059.1 ATF3 gene_id:467|Hs108|chr1            ( 124)  785 138.4 1.6e-33
CCDS41464.1 ATF3 gene_id:467|Hs108|chr1            ( 135)  756 133.7 4.6e-32
CCDS55688.1 ATF3 gene_id:467|Hs108|chr1            ( 106)  478 88.1 1.9e-18
CCDS45139.1 JDP2 gene_id:122953|Hs108|chr14        ( 174)  435 81.3 3.5e-16
CCDS9842.1 JDP2 gene_id:122953|Hs108|chr14         ( 163)  430 80.4 5.9e-16


>>CCDS1506.1 ATF3 gene_id:467|Hs108|chr1                  (181 aa)
 initn: 1171 init1: 1171 opt: 1171  Z-score: 1054.4  bits: 201.7 E(32554): 2.1e-52
Smith-Waterman score: 1171; 100.0% identity (100.0% similar) in 181 aa overlap (1-181:1-181)

               10        20        30        40        50        60
pF1KB7 MMLQHPGQVSASEVSASAIVPCLSPPGSLVFEDFANLTPFVKEELRFAIQNKHLCHRMSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 MMLQHPGQVSASEVSASAIVPCLSPPGSLVFEDFANLTPFVKEELRFAIQNKHLCHRMSS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 ALESVTVSDRPLGVSITKAEVAPEEDERKKRRRERNKIAAAKCRNKKKEKTECLQKESEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 ALESVTVSDRPLGVSITKAEVAPEEDERKKRRRERNKIAAAKCRNKKKEKTECLQKESEK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 LESVNAELKAQIEELKNEKQHLIYMLNLHRPTCIVRAQNGRTPEDERNLFIQQIKEGTLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 LESVNAELKAQIEELKNEKQHLIYMLNLHRPTCIVRAQNGRTPEDERNLFIQQIKEGTLQ
              130       140       150       160       170       180

        
pF1KB7 S
       :
CCDS15 S
        

>>CCDS58059.1 ATF3 gene_id:467|Hs108|chr1                 (124 aa)
 initn: 785 init1: 785 opt: 785  Z-score: 715.3  bits: 138.4 E(32554): 1.6e-33
Smith-Waterman score: 785; 100.0% identity (100.0% similar) in 124 aa overlap (58-181:1-124)

        30        40        50        60        70        80       
pF1KB7 SLVFEDFANLTPFVKEELRFAIQNKHLCHRMSSALESVTVSDRPLGVSITKAEVAPEEDE
                                     ::::::::::::::::::::::::::::::
CCDS58                               MSSALESVTVSDRPLGVSITKAEVAPEEDE
                                             10        20        30

        90       100       110       120       130       140       
pF1KB7 RKKRRRERNKIAAAKCRNKKKEKTECLQKESEKLESVNAELKAQIEELKNEKQHLIYMLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 RKKRRRERNKIAAAKCRNKKKEKTECLQKESEKLESVNAELKAQIEELKNEKQHLIYMLN
               40        50        60        70        80        90

       150       160       170       180 
pF1KB7 LHRPTCIVRAQNGRTPEDERNLFIQQIKEGTLQS
       ::::::::::::::::::::::::::::::::::
CCDS58 LHRPTCIVRAQNGRTPEDERNLFIQQIKEGTLQS
              100       110       120    

>>CCDS41464.1 ATF3 gene_id:467|Hs108|chr1                 (135 aa)
 initn: 756 init1: 756 opt: 756  Z-score: 689.2  bits: 133.7 E(32554): 4.6e-32
Smith-Waterman score: 756; 100.0% identity (100.0% similar) in 116 aa overlap (1-116:1-116)

               10        20        30        40        50        60
pF1KB7 MMLQHPGQVSASEVSASAIVPCLSPPGSLVFEDFANLTPFVKEELRFAIQNKHLCHRMSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MMLQHPGQVSASEVSASAIVPCLSPPGSLVFEDFANLTPFVKEELRFAIQNKHLCHRMSS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 ALESVTVSDRPLGVSITKAEVAPEEDERKKRRRERNKIAAAKCRNKKKEKTECLQKESEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::    
CCDS41 ALESVTVSDRPLGVSITKAEVAPEEDERKKRRRERNKIAAAKCRNKKKEKTECLQKLPRP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 LESVNAELKAQIEELKNEKQHLIYMLNLHRPTCIVRAQNGRTPEDERNLFIQQIKEGTLQ
                                                                   
CCDS41 FWVQKTCIWAVDSCK                                             
              130                                                  

>>CCDS55688.1 ATF3 gene_id:467|Hs108|chr1                 (106 aa)
 initn: 478 init1: 478 opt: 478  Z-score: 444.8  bits: 88.1 E(32554): 1.9e-18
Smith-Waterman score: 496; 75.0% identity (75.0% similar) in 116 aa overlap (1-116:1-87)

               10        20        30        40        50        60
pF1KB7 MMLQHPGQVSASEVSASAIVPCLSPPGSLVFEDFANLTPFVKEELRFAIQNKHLCHRMSS
       :::::::::::::                             ::::::::::::::::::
CCDS55 MMLQHPGQVSASE-----------------------------EELRFAIQNKHLCHRMSS
               10                                     20        30 

               70        80        90       100       110       120
pF1KB7 ALESVTVSDRPLGVSITKAEVAPEEDERKKRRRERNKIAAAKCRNKKKEKTECLQKESEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::    
CCDS55 ALESVTVSDRPLGVSITKAEVAPEEDERKKRRRERNKIAAAKCRNKKKEKTECLQKLPRP
              40        50        60        70        80        90 

              130       140       150       160       170       180
pF1KB7 LESVNAELKAQIEELKNEKQHLIYMLNLHRPTCIVRAQNGRTPEDERNLFIQQIKEGTLQ
                                                                   
CCDS55 FWVQKTCIWAVDSCK                                             
             100                                                   

>>CCDS45139.1 JDP2 gene_id:122953|Hs108|chr14             (174 aa)
 initn: 550 init1: 419 opt: 435  Z-score: 403.9  bits: 81.3 E(32554): 3.5e-16
Smith-Waterman score: 445; 48.8% identity (73.3% similar) in 172 aa overlap (6-176:14-173)

                       10        20        30        40         50 
pF1KB7         MMLQHPGQVSASEVSASAIVPCLSPPGSLVFEDFANLTPFVKEELRFA-IQN
                    :::.    :..... : :.:  .:        . .. :::..: :.:
CCDS45 MVAGWPATPPAMMPGQIPDPSVTTGSL-PGLGPLTGL------PSSALTVEELKYADIRN
               10        20         30              40        50   

              60        70        80        90       100       110 
pF1KB7 KHLCHRMSSALESVTVSDRPLGVSITKAEVAPEEDERKKRRRERNKIAAAKCRNKKKEKT
                 :: : .. ::  :   :.:.  ::.::.:::::.::.:::.:::::::.:
CCDS45 LGAMIAPLHFLE-VKLGKRPQPV---KSEL-DEEEERRKRRREKNKVAAARCRNKKKERT
            60         70            80        90       100        

             120       130       140       150       160       170 
pF1KB7 ECLQKESEKLESVNAELKAQIEELKNEKQHLIYMLNLHRPTCIVRAQNGRTPEDERNLFI
       : ::.:::.:: .:::::.::::::.:.:.:: ::: ::::::::... .:::.: : ..
CCDS45 EFLQRESERLELMNAELKTQIEELKQERQQLILMLNRHRPTCIVRTDSVKTPESEGNPLL
      110       120       130       140       150       160        

             180 
pF1KB7 QQIKEGTLQS
       .:...     
CCDS45 EQLEKK    
      170        

>>CCDS9842.1 JDP2 gene_id:122953|Hs108|chr14              (163 aa)
 initn: 514 init1: 419 opt: 430  Z-score: 399.9  bits: 80.4 E(32554): 5.9e-16
Smith-Waterman score: 445; 48.8% identity (73.3% similar) in 172 aa overlap (6-176:3-162)

               10        20        30        40         50         
pF1KB7 MMLQHPGQVSASEVSASAIVPCLSPPGSLVFEDFANLTPFVKEELRFA-IQNKHLCHRMS
            :::.    :..... : :.:  .:        . .. :::..: :.:        
CCDS98    MMPGQIPDPSVTTGSL-PGLGPLTGL------PSSALTVEELKYADIRNLGAMIAPL
                  10         20              30        40        50

      60        70        80        90       100       110         
pF1KB7 SALESVTVSDRPLGVSITKAEVAPEEDERKKRRRERNKIAAAKCRNKKKEKTECLQKESE
         :: : .. ::  :   :.:.  ::.::.:::::.::.:::.:::::::.:: ::.:::
CCDS98 HFLE-VKLGKRPQPV---KSEL-DEEEERRKRRREKNKVAAARCRNKKKERTEFLQRESE
                60            70        80        90       100     

     120       130       140       150       160       170         
pF1KB7 KLESVNAELKAQIEELKNEKQHLIYMLNLHRPTCIVRAQNGRTPEDERNLFIQQIKEGTL
       .:: .:::::.::::::.:.:.:: ::: ::::::::... .:::.: : ...:...   
CCDS98 RLELMNAELKTQIEELKQERQQLILMLNRHRPTCIVRTDSVKTPESEGNPLLEQLEKK  
         110       120       130       140       150       160     

     180 
pF1KB7 QS




181 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 14:38:26 2016 done: Sat Nov  5 14:38:26 2016
 Total Scan time:  2.170 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]
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