FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6787, 125 aa
  1>>>pF1KB6787 125 - 125 aa - 125 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5338+/-0.000308; mu= 9.9051+/- 0.019
 mean_var=76.3772+/-14.728, 0's: 0 Z-trim(117.4): 1  B-trim: 614 in 1/49
 Lambda= 0.146755
 statistics sampled from 29433 (29434) to 29433 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.726), E-opt: 0.2 (0.345), width:  16
 Scan time:  4.740

The best scores are:                                      opt bits E(85289)
NP_001019 (OMIM: 180465) 40S ribosomal protein S25 ( 125)  806 179.2 1.5e-45


>>NP_001019 (OMIM: 180465) 40S ribosomal protein S25 [Ho  (125 aa)
 initn: 806 init1: 806 opt: 806  Z-score: 938.6  bits: 179.2 E(85289): 1.5e-45
Smith-Waterman score: 806; 100.0% identity (100.0% similar) in 125 aa overlap (1-125:1-125)

               10        20        30        40        50        60
pF1KB6 MPPKDDKKKKDAGKSAKKDKDPVNKSGGKAKKKKWSKGKVRDKLNNLVLFDKATYDKLCK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPPKDDKKKKDAGKSAKKDKDPVNKSGGKAKKKKWSKGKVRDKLNNLVLFDKATYDKLCK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 EVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTKGGDAPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTKGGDAPA
               70        80        90       100       110       120

            
pF1KB6 AGEDA
       :::::
NP_001 AGEDA
            




125 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 15:14:34 2016 done: Fri Nov  4 15:14:35 2016
 Total Scan time:  4.740 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]